Experiment set1IT084 for Pseudomonas putida KT2440

Compare to:

Potassium Acetate Carbon Source (20mM)

200 most important genes:

  gene name fitness t score description  
PP_1635 -6.3 -4.3 DNA-binding response regulator compare
PP_0967 -5.9 -5.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5659 -5.7 -3.9 protein of unknown function compare
PP_5185 -5.6 -3.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0184 -5.5 -6.5 Argininosuccinate lyase compare
PP_0966 -5.4 -7.3 Histidinol dehydrogenase compare
PP_0356 -5.3 -6.3 malate synthase G compare
PP_1985 -5.3 -3.6 3-isopropylmalate dehydratase large subunit compare
PP_0691 -5.2 -5.1 Glutamate 5-kinase compare
PP_4116 -5.2 -7.9 isocitrate lyase compare
PP_4680 -5.2 -7.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0082 -5.1 -5.0 tryptophan synthase alpha chain compare
PP_4696 -5.0 -6.0 Nitrogen regulation protein NR(I) compare
PP_2168 -4.9 -9.8 Transaldolase compare
PP_4487 -4.8 -17.8 acetyl-CoA synthetase conserved
PP_1695 -4.8 -9.2 putative Sodium-solute symporter/sensory box histidine kinase/response regulator conserved
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_1988 -4.8 -7.3 3-isopropylmalate dehydrogenase compare
PP_4678 -4.8 -12.3 Ketol-acid reductoisomerase compare
PP_5289 -4.7 -5.6 Acetylglutamate kinase compare
PP_4679 -4.7 -5.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4799 -4.7 -3.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0965 -4.6 -9.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0420 -4.6 -9.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0289 -4.6 -8.2 Imidazoleglycerol-phosphate dehydratase compare
PP_1995 -4.5 -8.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0290 -4.5 -8.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4909 -4.5 -7.5 phosphoserine phosphatase compare
PP_1088 -4.5 -12.1 Argininosuccinate synthase compare
PP_0417 -4.4 -15.2 Anthranilate synthase component 1 compare
PP_3511 -4.4 -7.8 Branched-chain-amino-acid aminotransferase compare
PP_4890 -4.3 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_1079 -4.3 -7.1 Ornithine carbamoyltransferase compare
PP_5097 -4.3 -12.7 homoserine O-acetyltransferase compare
PP_4723 -4.3 -5.9 Carbamoyl-phosphate synthase large chain compare
PP_0292 -4.3 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5014 -4.3 -4.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_0083 -4.2 -6.4 tryptophan synthase beta chain compare
PP_0422 -4.0 -4.7 Indole-3-glycerol phosphate synthase compare
PP_5098 -4.0 -8.0 methionine biosynthesis protein MetW compare
PP_0293 -4.0 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5128 -3.9 -10.8 Dihydroxy-acid dehydratase compare
PP_4693 -3.8 -10.2 RNA polymerase-binding transcription factor DksA compare
PP_1986 -3.7 -3.5 3-isopropylmalate dehydratase small subunit compare
PP_0421 -3.7 -9.2 Anthranilate phosphoribosyltransferase compare
PP_1025 -3.6 -13.1 2-isopropylmalate synthase compare
PP_2327 -3.5 -8.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2371 -3.5 -5.7 Sulphite reductase hemoprotein, beta subunit compare
PP_2001 -3.5 -9.9 O-succinylhomoserine sulfhydrylase compare
PP_4724 -3.5 -4.1 Carbamoyl-phosphate synthase small chain compare
PP_5015 -3.3 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4058 -3.2 -12.3 1,4-alpha-glucan branching enzyme compare
PP_5155 -3.2 -7.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5095 -3.1 -3.0 pyrroline-5-carboxylate reductase compare
PP_2000 -2.8 -2.7 amidophosphoribosyl transferase compare
PP_3999 -2.7 -6.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4364 -2.7 -5.8 putative Anti-sigma F factor antagonist compare
PP_0164 -2.6 -8.5 conserved protein of unknown function compare
PP_4700 -2.5 -5.2 pantothenate synthetase compare
PP_4126 -2.5 -3.2 NADH-quinone oxidoreductase subunit I compare
PP_5347 -2.5 -10.1 pyruvate carboxylase subunit A compare
PP_1664 -2.4 -6.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_5035 -2.4 -8.5 Histidine utilization repressor compare
PP_4130 -2.3 -6.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4124 -2.3 -6.3 NADH-quinone oxidoreductase subunit G compare
PP_2328 -2.3 -5.3 Phosphoadenosine phosphosulfate reductase compare
PP_5346 -2.3 -8.0 pyruvate carboxylase subunit B compare
PP_4121 -2.3 -7.1 NADH-quinone oxidoreductase subunit C/D compare
PP_4129 -2.2 -5.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1493 -2.2 -3.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0393 -2.1 -3.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4122 -2.1 -3.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4131 -2.1 -7.6 NADH-quinone oxidoreductase subunit N compare
PP_4120 -2.0 -5.6 NADH-quinone oxidoreductase subunit B compare
PP_0914 -2.0 -10.3 GGDEF domain protein compare
PP_4964 -2.0 -4.2 D-erythrose 4-phosphate dehydrogenase compare
PP_0218 -1.9 -8.9 Sensory box protein compare
PP_0760 -1.9 -4.0 conserved membrane protein of unknown function compare
PP_4254 -1.9 -3.0 conserved protein of unknown function compare
PP_1742 -1.8 -4.0 conserved inner membrane protein of unknown function compare
PP_5313 -1.8 -3.1 DNA-binding protein HU-alpha compare
PP_3662 -1.8 -7.5 conserved protein of unknown function compare
PP_5216 -1.7 -2.5 exopolyphosphatase compare
PP_5329 -1.7 -3.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2302 -1.6 -6.7 DNA-binding, ATP-dependent protease compare
PP_0291 -1.6 -1.9 conserved protein of unknown function compare
PP_5198 -1.6 -4.0 conserved protein of unknown function compare
PP_2324 -1.6 -5.7 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_2370 -1.5 -1.6 conserved protein of unknown function compare
PP_0154 -1.5 -9.9 Succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18) (from data) conserved
PP_5348 -1.5 -6.4 Transcriptional regulator, LysR family compare
PP_3541 -1.5 -3.3 Transporter, MgtC family compare
PP_1783 -1.5 -3.6 dTDP-glucose pyrophosphorylase compare
PP_5327 -1.5 -4.5 putative phosphate ABC transporter, permease subunit compare
PP_1654 -1.4 -3.6 cysteine synthase B compare
PP_4699 -1.4 -4.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3248 -1.4 -4.1 Dyp-type peroxidase family protein compare
PP_4268 -1.4 -1.8 nucleoid-associated broad specificity regulator compare
PP_1237 -1.4 -3.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1716 -1.4 -2.0 Transcriptional regulator, Cro/CI family compare
PP_1656 -1.4 -2.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_1217 -1.4 -5.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4008 -1.3 -6.0 ATP-dependent serine protease compare
PP_2345 -1.3 -1.8 conserved exported protein of unknown function compare
PP_5028 -1.3 -4.2 proline iminopeptidase compare
PP_1364 -1.3 -6.7 conserved exported protein of unknown function compare
PP_4004 -1.3 -3.6 DNA translocase FtsK compare
PP_2136 -1.3 -3.9 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_2433 -1.2 -2.1 conserved protein of unknown function compare
PP_3649 -1.2 -3.8 Transcriptional regulator, GntR family compare
PP_4480 -1.2 -6.6 arginine N-succinyltransferase, subunit alpha compare
PP_3043 -1.2 -1.8 conserved protein of unknown function compare
PP_5441 -1.2 -3.4 protein of unknown function compare
PP_1303 -1.2 -4.2 Sulfate adenylyltransferase subunit 2 compare
PP_1304 -1.2 -6.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2402 -1.1 -2.5 putative Sensor histidine kinase compare
PP_2326 -1.1 -4.7 Universal stress protein compare
PP_4793 -1.1 -1.8 conserved protein of unknown function compare
PP_4917 -1.1 -4.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2322 -1.1 -3.4 Major outer membrane lipoprotein compare
PP_5217 -1.1 -6.5 Polyphosphate kinase compare
PP_0833 -1.1 -1.8 queuine tRNA-ribosyltransferase compare
PP_1512 -1.1 -3.3 conserved protein of unknown function compare
PP_1215 -1.1 -1.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_1733 -1.1 -2.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_5227 -1.1 -4.9 diaminopimelate decarboxylase compare
PP_1994 -1.1 -2.7 tRNA pseudouridine (38-40)synthase compare
PP_5168 -1.0 -3.2 sulfate/thiosulfate import ATP-binding protein compare
PP_5294 -1.0 -4.7 Ribonuclease PH compare
PP_4098 -1.0 -2.2 UvrABC system protein C compare
PP_1999 -1.0 -1.4 membrane protein required for colicin V production compare
PP_2499 -1.0 -1.8 conserved protein of unknown function compare
PP_3603 -1.0 -4.5 Transcriptional regulator, GntR family compare
PP_1589 -1.0 -5.7 uridylyltransferase compare
PP_4642 -1.0 -1.4 Cyclic diguanosine monophosphate-binding protein compare
PP_0414 -1.0 -2.8 Polyamine ABC transporter, permease protein compare
PP_4546 -1.0 -3.7 ATP-dependent helicase HrpA compare
PP_5146 -1.0 -4.4 RNA pyrophosphohydrolase compare
PP_1629 -1.0 -5.2 Protein RecA compare
PP_1774 -1.0 -2.4 conserved exported protein of unknown function compare
PP_1743 -0.9 -5.8 acetate permease compare
PP_5303 -0.9 -3.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4993 -0.9 -3.9 Glutathione synthetase compare
PP_4988 -0.9 -3.9 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4989 -0.9 -3.0 Protein PilJ compare
PP_0002 -0.9 -4.9 probable chromosome partition protein compare
PP_4952 -0.9 -1.1 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2031 -0.9 -2.3 conserved protein of unknown function compare
PP_0673 -0.9 -1.9 conserved protein of unknown function compare
PP_0757 -0.9 -2.9 conserved protein of unknown function compare
PP_1021 -0.9 -3.0 DNA-binding transcriptional regulator compare
PP_5508 -0.9 -1.3 conserved protein of unknown function compare
PP_0261 -0.9 -2.7 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_2631 -0.9 -1.5 putative cellulose biosynthesis, BcsF/YhjT compare
PP_3411 -0.9 -1.3 conserved protein of unknown function compare
PP_1142 -0.8 -1.1 conserved protein of unknown function compare
PP_1404 -0.8 -2.3 conserved protein of unknown function compare
PP_4504 -0.8 -1.3 conserved exported protein of unknown function compare
PP_4362 -0.8 -2.1 conserved protein of unknown function compare
PP_4285 -0.8 -3.2 5-hydroxyisourate hydrolase compare
PP_1872 -0.8 -5.0 glutamate-pyruvate aminotransferase compare
PP_2509 -0.8 -2.7 conserved protein of unknown function compare
PP_3903 -0.8 -1.1 conserved protein of unknown function compare
PP_2137 -0.8 -1.9 beta-ketoadipyl CoA thiolase, beta component compare
PP_5393 -0.8 -1.3 putative metal-binding chaperone compare
PP_3519 -0.8 -1.1 putative Lipoprotein compare
PP_5331 -0.8 -2.0 Long-chain acyl-CoA thioester hydrolase compare
PP_2032 -0.8 -3.7 putative ATPase compare
PP_0236 -0.8 -1.8 NAD(P)H-dependent FMN reductase subunit compare
PP_0150 -0.8 -2.3 conserved exported protein of unknown function compare
PP_4340 -0.7 -2.1 response regulator for chemotactic signal transduction compare
PP_3902 -0.7 -1.9 conserved protein of unknown function compare
PP_4645 -0.7 -2.0 Large-conductance mechanosensitive channel compare
PP_0260 -0.7 -3.9 ADP-sugar pyrophosphorylase compare
PP_4143 -0.7 -2.3 conserved protein of unknown function compare
PP_5085 -0.7 -4.3 malic enzyme B compare
PP_4880 -0.7 -5.1 exoribonuclease R compare
PP_4500 -0.7 -2.6 TrpH family protein compare
PP_4392 -0.7 -3.7 chemotaxis protein methyltransferase compare
PP_3861 -0.7 -2.1 Phage FluMu protein gp46 compare
PP_5652 -0.7 -1.5 conserved protein of unknown function, phage origin compare
PP_1609 -0.7 -2.0 conserved protein of unknown function compare
PP_4329 -0.7 -1.9 FlhB domain protein compare
PP_0823 -0.7 -4.4 Selenide, water dikinase compare
PP_0738 -0.7 -2.1 conserved protein of unknown function compare
PP_1293 -0.7 -1.5 molybdopterin synthase small subunit compare
PP_1553 -0.7 -1.6 conserved protein of unknown function compare
PP_1269 -0.7 -1.1 Universal stress protein family compare
PP_2429 -0.7 -1.2 putative Membrane protein compare
PP_2027 -0.7 -3.3 conserved exported protein of unknown function compare
PP_4575 -0.7 -2.3 Urea amidolyase-related protein compare
PP_4227 -0.7 -1.3 conserved protein of unknown function compare
PP_2756 -0.7 -2.1 conserved protein of unknown function compare
PP_4662 -0.7 -2.3 conserved protein of unknown function compare
PP_0627 -0.7 -1.6 conserved protein of unknown function compare
PP_0048 -0.7 -1.0 conserved protein of unknown function compare
PP_2907 -0.7 -1.9 DNA-binding response regulator compare
PP_5528 -0.7 -1.2 conserved protein of unknown function compare
PP_3819 -0.7 -3.9 glutathione reductase (NADPH) compare
PP_2668 -0.7 -1.6 ABC efflux transporter, ATP-binding protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Potassium acetate in Pseudomonas putida KT2440

For carbon source Potassium acetate across organisms