Experiment set1IT084 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with FelixO1_phage 0.05 MOI

200 most important genes:

  gene name fitness t score description  
GFF1396 -7.3 -5.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF3054 -7.2 -8.6 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
GFF3905 -6.9 -6.7 regulator of length of O-antigen component of lipopolysaccharide chains compare
GFF1808 -6.8 -4.7 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
GFF3901 -6.4 -3.4 Phosphomannomutase (EC 5.4.2.8) compare
GFF880 -6.3 -8.7 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
GFF3886 -6.2 -6.0 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF3397 -6.2 -7.4 Transcription-repair coupling factor compare
GFF2880 -6.2 -4.3 4-alpha-L-fucosyltransferase (EC 2.4.1.-) compare
GFF2968 -6.0 -4.0 Stringent starvation protein A compare
GFF3566 -6.0 -3.1 major outer membrane lipoprotein compare
GFF2430 -5.9 -1.9 Ferredoxin, 2Fe-2S compare
GFF3862 -5.8 -4.0 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF3887 -5.6 -3.9 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
GFF1815 -5.6 -4.7 Electron transport complex protein RnfA compare
GFF2475 -5.5 -3.1 Ribonuclease III (EC 3.1.26.3) compare
GFF4788 -5.4 -6.4 RNA polymerase sigma factor RpoS compare
GFF4798 -5.4 -3.7 Adenylylsulfate kinase (EC 2.7.1.25) compare
GFF1311 -5.3 -11.9 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
GFF2922 -5.2 -2.4 Transcription elongation factor GreA compare
GFF4839 -5.2 -14.2 BarA sensory histidine kinase (= VarS = GacS) compare
GFF2882 -4.9 -3.4 Lipopolysaccharide biosynthesis protein RffA compare
GFF1933 -4.9 -5.4 DedA protein compare
GFF3888 -4.7 -3.3 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
GFF2431 -4.6 -4.0 Chaperone protein HscA compare
GFF3772 -4.4 -2.4 1-phosphofructokinase (EC 2.7.1.56) compare
GFF4586 -4.3 -2.4 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) compare
GFF4601 -4.2 -2.9 Phosphoglucomutase (EC 5.4.2.2) compare
GFF2881 -4.1 -2.8 WzxE protein compare
GFF2907 -4.1 -7.4 HTH-type transcriptional regulator hdfR compare
GFF389 -3.9 -2.7 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
GFF115 -3.9 -5.3 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
GFF2698 -3.8 -10.8 Exoribonuclease II (EC 3.1.13.1) compare
GFF3890 -3.8 -2.4 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) compare
GFF1076 -3.7 -3.3 Aerobic respiration control protein arcA compare
GFF3644 -3.7 -3.6 Electron transport complex protein RnfD compare
GFF3643 -3.6 -5.9 Electron transport complex protein RnfG compare
GFF633 -3.6 -5.0 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF1303 -3.5 -1.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
GFF2906 -3.5 -3.4 Protein yifE compare
GFF629 -3.4 -1.6 Shikimate kinase I (EC 2.7.1.71) compare
GFF1737 -3.3 -3.2 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
GFF386 -3.3 -4.9 Lipopolysaccharide core biosynthesis protein RfaY compare
GFF824 -3.3 -2.2 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF1634 -3.3 -5.3 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF4355 -3.3 -1.5 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF2348 -3.2 -4.3 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
GFF4111 -3.2 -1.3 Curlin genes transcriptional activator compare
GFF4789 -3.1 -7.9 Lipoprotein NlpD compare
GFF1699 -3.1 -1.8 BarA-associated response regulator UvrY (= GacA = SirA) compare
GFF3874 -3.1 -2.1 Colanic acid biosynthesis acetyltransferase WcaF (EC 2.3.1.-) compare
GFF661 -3.1 -7.3 6-phosphogluconolactonase (EC 3.1.1.31) compare
GFF3533 -3.1 -3.1 FIG00638687: hypothetical protein compare
GFF1058 -3.0 -10.1 NadR transcriptional regulator / Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22) compare
GFF2016 -3.0 -10.5 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) compare
GFF87 -3.0 -2.1 C4-type zinc finger protein, DksA/TraR family compare
GFF4160 -2.9 -4.4 UPF0125 protein yfjF compare
GFF1816 -2.9 -5.6 Electron transport complex protein RnfB compare
GFF4837 -2.9 -7.7 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 compare
GFF2051 -2.8 -6.3 Predicted transcriptional regulator of pyridoxine metabolism compare
GFF3212 -2.7 -1.2 FIG01046763: hypothetical protein compare
GFF2434 -2.7 -1.2 Iron-sulfur cluster assembly scaffold protein IscU compare
GFF3613 -2.7 -7.3 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps compare
GFF870 -2.6 -8.3 FIG00614015: hypothetical protein compare
GFF1830 -2.5 -6.0 Two-component sensor protein RcsD (EC 2.7.3.-) compare
GFF2104 -2.5 -2.7 ATP-dependent RNA helicase SrmB compare
GFF2973 -2.5 -7.9 Putative cytochrome d ubiquinol oxidase subunit III (EC 1.10.3.-) (Cytochrome bd-I oxidase subunit III) compare
GFF1256 -2.3 -2.7 Chromosome (plasmid) partitioning protein ParA compare
GFF1768 -2.3 -1.0 hypothetical protein compare
GFF2949 -2.3 -3.9 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
GFF34 -2.3 -2.0 FIG01280259: hypothetical protein compare
GFF1032 -2.2 -1.0 DNA polymerase III psi subunit (EC 2.7.7.7) compare
GFF3040 -2.2 -8.0 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
GFF2623 -2.1 -1.3 Putative inner membrane protein compare
GFF242 -2.1 -3.3 Magnesium and cobalt transport protein CorA compare
GFF4192 -2.1 -2.2 DNA-binding protein HU-alpha compare
GFF4635 -2.1 -2.4 Succinate dehydrogenase cytochrome b-556 subunit compare
GFF4638 -2.1 -5.6 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) compare
GFF1504 -2.1 -4.6 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
GFF4356 -2.1 -4.0 DNA-binding protein HU-beta compare
GFF3395 -2.1 -1.6 Putative outer membrane protein compare
GFF2991 -2.0 -1.9 Tyrosine recombinase XerD compare
GFF1503 -2.0 -4.8 Lipoprotein nlpI precursor compare
GFF2433 -1.9 -3.0 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF355 -1.9 -1.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
GFF2415 -1.9 -2.9 Nucleoside diphosphate kinase (EC 2.7.4.6) compare
GFF4636 -1.9 -4.3 Succinate dehydrogenase hydrophobic membrane anchor protein compare
GFF2249 -1.9 -3.2 Putative merR family bacterial regulatory protein compare
GFF4473 -1.9 -1.6 FIG01046818: hypothetical protein compare
GFF2679 -1.8 -4.2 Transcriptional repressor protein TyrR compare
GFF4579 -1.8 -6.2 tRNA-i(6)A37 methylthiotransferase compare
GFF1683 -1.8 -6.2 Tyrosine-specific transport protein compare
GFF4637 -1.8 -8.7 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) compare
GFF233 -1.8 -1.8 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
GFF3506 -1.8 -1.8 6-phospho-beta-glucosidase (EC 3.2.1.86) compare
GFF4891 -1.8 -6.8 Transport ATP-binding protein CydD compare
GFF4491 -1.8 -4.7 Enterobactin esterase compare
GFF1735 -1.7 -3.7 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
GFF4890 -1.7 -5.5 Transport ATP-binding protein CydC compare
GFF2110 -1.7 -3.9 Sigma factor RpoE regulatory protein RseC compare
GFF588 -1.7 -6.4 Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1) compare
GFF539 -1.7 -2.6 Putative inner membrane protein compare
GFF3146 -1.7 -2.9 '3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)' transl_table=11 compare
GFF2484 -1.7 -1.4 FIG00639146: hypothetical protein compare
GFF2967 -1.6 -1.5 ClpXP protease specificity-enhancing factor / Stringent starvation protein B compare
GFF1747 -1.6 -1.2 putative inner membrane protein compare
GFF1512 -1.6 -7.1 FIG002208: Acetyltransferase (EC 2.3.1.-) compare
GFF2303 -1.6 -5.8 Putative uncharacterized protein YiiQ compare
GFF4014 -1.6 -1.2 Flagellar protein FliJ compare
GFF3558 -1.6 -1.9 Iron binding protein SufA for iron-sulfur cluster assembly compare
GFF2816 -1.5 -2.3 Septum site-determining protein MinC compare
GFF1591 -1.5 -1.2 Transcription repressor of tripartite multidrug resistance system compare
GFF928 -1.5 -4.5 Endoribonuclease L-PSP compare
GFF1353 -1.5 -1.5 hypothetical protein compare
GFF2149 -1.5 -3.6 Malate dehydrogenase (EC 1.1.1.37) compare
GFF3723 -1.5 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
GFF2887 -1.4 -5.3 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) compare
GFF716 -1.4 -3.9 L,D-transpeptidase YbiS compare
GFF2063 -1.4 -1.2 Inner membrane protein YfeZ compare
GFF662 -1.4 -7.3 Pectinesterase (EC 3.1.1.11) compare
GFF3149 -1.4 -6.7 Type I secretion outer membrane protein, TolC precursor compare
GFF156 -1.4 -1.2 rRNA small subunit methyltransferase H compare
GFF3419 -1.4 -1.9 Nudix-like NDP and NTP phosphohydrolase YmfB compare
GFF89 -1.4 -4.2 Poly(A) polymerase (EC 2.7.7.19) compare
GFF3749 -1.4 -2.9 Nucleoid-associated protein NdpA compare
GFF365 -1.4 -2.1 Protein YicC compare
GFF3996 -1.4 -4.1 DNA-cytosine methyltransferase (EC 2.1.1.37) compare
GFF1950 -1.3 -2.6 Chorismate synthase (EC 4.2.3.5) compare
GFF1599 -1.3 -1.9 Putative phosphatase YqaB compare
GFF3835 -1.3 -2.7 Uncharacterized HTH-type transcriptional regulator YegW compare
GFF2819 -1.3 -4.2 Ribonuclease D (EC 3.1.26.3) compare
GFF906 -1.3 -0.8 FIG01047835: hypothetical protein compare
GFF3642 -1.3 -3.0 Electron transport complex protein RnfE compare
GFF3030 -1.3 -5.1 Agmatinase (EC 3.5.3.11) compare
GFF4250 -1.2 -0.9 Putative copper chaperone compare
GFF3515 -1.2 -1.6 FIG00637864: hypothetical protein compare
GFF175 -1.2 -2.2 DedA family inner membrane protein YabI compare
GFF1734 -1.2 -3.4 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
GFF925 -1.2 -1.1 hypothetical protein compare
GFF1423 -1.2 -5.8 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) compare
GFF4634 -1.2 -3.9 Citrate synthase (si) (EC 2.3.3.1) compare
GFF1168 -1.2 -1.1 IncF plasmid conjugative transfer protein TrbI compare
GFF2466 -1.2 -0.9 Sialic acid utilization regulator, RpiR family compare
GFF4641 -1.1 -1.4 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) compare
GFF1891 -1.1 -2.2 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
GFF3794 -1.1 -3.4 SanA protein compare
GFF3247 -1.1 -2.3 Macrodomain Ter protein YcbG compare
GFF1221 -1.1 -0.9 hypothetical protein compare
GFF3342 -1.1 -4.3 Dihydroorotase (EC 3.5.2.3) compare
GFF3990 -1.1 -0.9 hypothetical protein compare
GFF2194 -1.1 -1.4 FIG01046050: hypothetical protein compare
GFF2212 -1.1 -2.0 YihE protein, a ser/thr kinase implicated in LPS synthesis and Cpx signalling compare
GFF746 -1.1 -1.9 Putative permease compare
GFF4286 -1.1 -3.3 Shikimate kinase III (EC 2.7.1.71) compare
GFF2501 -1.0 -0.7 FIG00638667: hypothetical protein compare
GFF1033 -1.0 -3.4 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
GFF1801 -1.0 -1.0 hypothetical protein compare
GFF1681 -1.0 -1.6 Ferritin-like protein 2 compare
GFF3236 -1.0 -3.7 Dihydroorotate dehydrogenase (EC 1.3.3.1) compare
GFF4646 -1.0 -5.3 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF714 -1.0 -2.9 Mn-dependent transcriptional regulator MntR compare
GFF4133 -1.0 -1.4 6-phospho-3-hexuloisomerase compare
GFF2833 -1.0 -2.0 PTS system, mannose-specific IID component (EC 2.7.1.69) compare
GFF3409 -1.0 -1.7 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
GFF4290 -1.0 -2.2 DNA recombination-dependent growth factor C compare
GFF744 -1.0 -1.3 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
GFF773 -1.0 -1.2 probable lipoprotein compare
GFF2750 -1.0 -2.8 Thymidine kinase (EC 2.7.1.21) compare
GFF4733 -1.0 -0.7 Type III secretion transcriptional regulator HilC (= SirC) compare
GFF4103 -1.0 -4.5 probable exported protein STY0357 compare
GFF1715 -1.0 -3.5 Flavoprotein MioC compare
GFF868 -0.9 -2.7 '3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)' transl_table=11 compare
GFF366 -0.9 -2.9 Ribonuclease PH (EC 2.7.7.56) compare
GFF3748 -0.9 -0.8 FIG002927: hypothetical protein compare
GFF3026 -0.9 -2.4 ATPase component STY3232 of energizing module of queuosine-regulated ECF transporter compare
GFF3744 -0.9 -2.9 O-antigen acetylase compare
GFF1572 -0.9 -2.8 Transcriptional regulator, ArsR family compare
GFF1365 -0.9 -1.2 FIG01046261: hypothetical protein compare
GFF189 -0.9 -3.2 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF1612 -0.9 -1.5 FIG01046582: hypothetical protein compare
GFF2564 -0.9 -2.5 Gfa-like protein compare
GFF745 -0.9 -2.9 Deoxyribose operon repressor, DeoR family compare
GFF2738 -0.9 -2.2 hypothetical protein compare
GFF3104 -0.9 -0.7 Hydrogenase maturation protease (EC 3.4.24.-) compare
GFF1781 -0.9 -2.4 Putative binding-protein-dependent transport system compare
GFF180 -0.9 -0.5 FIG01045455: hypothetical protein compare
GFF3066 -0.9 -3.0 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
GFF4358 -0.9 -0.9 FIG01200701: possible membrane protein compare
GFF1191 -0.9 -1.9 putative cytoplasmic protein compare
GFF2281 -0.9 -4.8 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
GFF2840 -0.9 -1.2 Putative inner membrane protein compare
GFF3684 -0.9 -1.8 Hypothetical metal-binding enzyme, YcbL homolog compare
GFF3012 -0.9 -3.8 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
GFF2478 -0.8 -0.8 leucine-rich repeat protein compare
GFF1281 -0.8 -1.1 Head decoration protein compare
GFF739 -0.8 -2.0 Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) compare
GFF1615 -0.8 -1.1 phage-tail assembly-like protein compare
GFF2257 -0.8 -1.1 hypothetical protein compare
GFF1156 -0.8 -0.9 IncF plasmid conjugative transfer pilus assembly protein TraL compare
GFF4820 -0.8 -2.2 Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) compare


Specific Phenotypes

For 12 genes in this experiment

For phage FelixO1_phage in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

For phage FelixO1_phage across organisms