Experiment set1IT084 for Enterobacter asburiae PDN3

Compare to:

M9 with sucrose; no stress control

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_4153 -5.6 -3.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_4422 -5.0 -11.3 argininosuccinate lyase compare
EX28DRAFT_2265 -4.8 -2.3 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_2027 -4.7 -7.1 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_0537 -4.7 -14.7 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_3668 -4.6 -14.3 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_4419 -4.4 -4.6 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_4443 -4.3 -15.7 dihydroxy-acid dehydratase compare
EX28DRAFT_2851 -4.3 -5.2 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_2701 -4.3 -13.8 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_0046 -4.1 -5.6 shikimate dehydrogenase compare
EX28DRAFT_2651 -4.1 -8.2 glutamate 5-kinase compare
EX28DRAFT_2650 -4.0 -11.2 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_0535 -4.0 -10.8 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_0536 -4.0 -6.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_3046 -4.0 -13.0 cystathionine beta-lyase, bacterial compare
EX28DRAFT_0538 -4.0 -10.9 histidinol-phosphate aminotransferase compare
EX28DRAFT_2272 -4.0 -14.7 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_3614 -3.9 -14.1 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_2916 -3.9 -13.1 diaminopimelate decarboxylase compare
EX28DRAFT_2585 -3.9 -4.3 pyrroline-5-carboxylate reductase compare
EX28DRAFT_4331 -3.9 -11.5 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_0533 -3.9 -11.7 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_0934 -3.9 -17.1 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_4493 -3.8 -6.7 Transcriptional regulator compare
EX28DRAFT_4446 -3.8 -13.7 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_3669 -3.8 -8.8 3-isopropylmalate dehydrogenase compare
EX28DRAFT_3667 -3.7 -8.4 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_0534 -3.7 -10.7 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_4421 -3.7 -1.8 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_0933 -3.7 -15.1 tryptophan synthase, beta subunit compare
EX28DRAFT_3224 -3.7 -10.4 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_4420 -3.6 -2.5 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_2853 -3.6 -13.7 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_0539 -3.6 -8.3 histidinol dehydrogenase compare
EX28DRAFT_2548 -3.5 -9.5 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_2893 -3.5 -9.7 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_0540 -3.5 -8.6 ATP phosphoribosyltransferase compare
EX28DRAFT_0932 -3.4 -6.7 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_3670 -3.4 -7.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_4445 -3.3 -7.6 Transcriptional regulator compare
EX28DRAFT_4418 -3.2 -13.4 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_4444 -3.2 -9.8 threonine ammonia-lyase, biosynthetic, long form compare
EX28DRAFT_2699 -3.1 -9.1 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_4478 -3.1 -7.5 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_0092 -3.0 -2.8 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_3671 -3.0 -6.6 RNA compare
EX28DRAFT_2917 -3.0 -4.8 Transcriptional regulator compare
EX28DRAFT_4411 -3.0 -10.2 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_2252 -3.0 -3.6 TolA protein compare
EX28DRAFT_3711 -3.0 -2.0 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_2852 -2.9 -13.2 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_2846 -2.9 -9.0 adenylyl-sulfate kinase compare
EX28DRAFT_4544 -2.8 -3.0 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_0935 -2.7 -8.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_4386 -2.6 -4.0 Signal transduction histidine kinase compare
EX28DRAFT_3401 -2.6 -2.3 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_3613 -2.6 -5.7 RNA compare
EX28DRAFT_0292 -2.6 -2.3 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_0972 -2.5 -3.1 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_3616 -2.5 -4.1 threonine synthase compare
EX28DRAFT_0494 -2.5 -2.0 Protein-tyrosine-phosphatase compare
EX28DRAFT_3646 -2.5 -7.9 4-hydroxythreonine-4-phosphate dehydrogenase compare
EX28DRAFT_0936 -2.4 -10.4 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_3461 -2.4 -6.5 ornithine carbamoyltransferase compare
EX28DRAFT_0214 -2.4 -5.8 cysteine synthase A compare
EX28DRAFT_0284 -2.3 -10.6 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_2531 -2.3 -2.8 endopeptidase La compare
EX28DRAFT_3710 -2.3 -7.4 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_4442 -2.2 -5.1 branched-chain amino acid aminotransferase, group I compare
EX28DRAFT_3647 -2.2 -6.3 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_0038 -2.2 -2.1 K+ transport systems, NAD-binding component compare
EX28DRAFT_3883 -2.1 -4.0 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_2847 -2.1 -13.0 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_1123 -2.0 -8.1 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_0922 -2.0 -3.0 TonB family C-terminal domain compare
EX28DRAFT_0469 -2.0 -4.0 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
EX28DRAFT_2043 -2.0 -11.2 transcriptional regulator, AsnC family compare
EX28DRAFT_2848 -2.0 -9.7 sulfate adenylyltransferase, small subunit compare
EX28DRAFT_4156 -1.9 -3.0 ribulose-phosphate 3-epimerase compare
EX28DRAFT_2245 -1.8 -7.1 quinolinate synthetase (EC 2.5.1.72) compare
EX28DRAFT_0111 -1.7 -2.9 FeS cluster assembly scaffold IscU compare
EX28DRAFT_0291 -1.7 -2.9 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_1050 -1.6 -2.1 luciferase family oxidoreductase, group 1 compare
EX28DRAFT_1124 -1.6 -10.6 sucrose-6-phosphate hydrolase compare
EX28DRAFT_0073 -1.6 -1.6 Negative regulator of sigma E activity compare
EX28DRAFT_3377 -1.5 -1.8 rRNA methylase, putative, group 3 compare
EX28DRAFT_2702 -1.5 -5.1 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_2849 -1.5 -6.0 uroporphyrin-III C-methyltransferase compare
EX28DRAFT_4170 -1.5 -7.8 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_2425 -1.5 -1.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3045 -1.4 -4.2 tonB-system energizer ExbB compare
EX28DRAFT_2240 -1.4 -1.8 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_2938 -1.4 -2.3 tRNA compare
EX28DRAFT_1122 -1.4 -6.0 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_3645 -1.4 -3.6 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_4440 -1.3 -6.0 acetolactate synthase, large subunit (EC 2.2.1.6) compare
EX28DRAFT_3675 -1.3 -7.4 transcriptional regulator, LacI family compare
EX28DRAFT_0167 -1.3 -2.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_3276 -1.3 -6.5 glutamate synthase small subunit family protein, proteobacterial compare
EX28DRAFT_0531 -1.3 -5.7 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_1740 -1.3 -1.1 Phosphotransferase system cellobiose-specific component IIA compare
EX28DRAFT_3449 -1.3 -1.8 Predicted membrane protein compare
EX28DRAFT_1841 -1.3 -1.1 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_3311 -1.3 -1.4 ribosomal protein L11 methyltransferase compare
EX28DRAFT_4271 -1.3 -1.1 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_1497 -1.3 -1.6 hypothetical protein compare
EX28DRAFT_3320 -1.3 -0.8 hypothetical protein compare
EX28DRAFT_1650 -1.3 -2.2 ribonuclease T compare
EX28DRAFT_0579 -1.2 -1.8 Uncharacterized protein conserved in bacteria (DUF2256) compare
EX28DRAFT_2375 -1.2 -7.1 ABC-type Fe2+-enterobactin transport system, periplasmic component compare
EX28DRAFT_3777 -1.2 -2.2 transcriptional antiterminator, Rof compare
EX28DRAFT_3879 -1.2 -4.0 Glycosyltransferase compare
EX28DRAFT_2271 -1.2 -2.6 hypothetical protein compare
EX28DRAFT_2075 -1.2 -3.7 type II secretion system protein H compare
EX28DRAFT_4413 -1.2 -6.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
EX28DRAFT_0861 -1.2 -6.1 Response regulator receiver domain compare
EX28DRAFT_0071 -1.2 -7.7 L-aspartate oxidase (EC 1.4.3.16) compare
EX28DRAFT_0399 -1.1 -3.2 Transcriptional regulator compare
EX28DRAFT_2250 -1.1 -2.6 peptidoglycan-associated lipoprotein compare
EX28DRAFT_0190 -1.1 -1.1 transcriptional regulator, Spx/MgsR family compare
EX28DRAFT_1986 -1.1 -0.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_0125 -1.1 -0.8 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_0132 -1.1 -4.4 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_1121 -1.1 -1.8 Sugar kinases, ribokinase family compare
EX28DRAFT_2546 -1.1 -4.6 2-dehydropantoate 2-reductase compare
EX28DRAFT_0545 -1.1 -2.1 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_1376 -1.1 -1.5 hypothetical protein compare
EX28DRAFT_0948 -1.1 -1.1 hypothetical protein compare
EX28DRAFT_3275 -1.1 -7.9 Glutamate synthase domain 2 compare
EX28DRAFT_4452 -1.1 -2.3 thioredoxin compare
EX28DRAFT_1309 -1.1 -2.4 hypothetical protein compare
EX28DRAFT_2424 -1.1 -3.7 transcriptional regulator, TetR family compare
EX28DRAFT_2492 -1.1 -2.0 Protein of unknown function (DUF2496) compare
EX28DRAFT_2008 -1.1 -3.9 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_3754 -1.1 -0.7 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_3708 -1.1 -1.4 Transcriptional regulators compare
EX28DRAFT_0208 -1.0 -5.7 sulfate ABC transporter, ATP-binding protein compare
EX28DRAFT_0593 -1.0 -5.6 DNA-methyltransferase (dcm) compare
EX28DRAFT_2532 -1.0 -2.2 RNA compare
EX28DRAFT_2509 -1.0 -2.4 transcriptional regulator, LacI family compare
EX28DRAFT_0068 -1.0 -1.1 autonomous glycyl radical cofactor GrcA compare
EX28DRAFT_4341 -1.0 -3.4 Protein-disulfide isomerase compare
EX28DRAFT_1651 -1.0 -2.8 monothiol glutaredoxin, Grx4 family compare
EX28DRAFT_2974 -1.0 -4.1 transketolase, bacterial and yeast compare
EX28DRAFT_2945 -1.0 -1.4 tyrosine recombinase XerD compare
EX28DRAFT_1056 -0.9 -1.6 ABC-type polar amino acid transport system, ATPase component compare
EX28DRAFT_3058 -0.9 -2.6 Signal transduction histidine kinase compare
EX28DRAFT_0730 -0.9 -1.2 YobH-like protein compare
EX28DRAFT_3729 -0.9 -4.3 pantoate--beta-alanine ligase compare
EX28DRAFT_0331 -0.9 -2.6 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_2958 -0.9 -1.1 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_1772 -0.9 -2.4 methionine-R-sulfoxide reductase compare
EX28DRAFT_1719 -0.9 -1.0 integration host factor, alpha subunit compare
EX28DRAFT_2677 -0.9 -1.0 hypothetical protein compare
EX28DRAFT_0286 -0.9 -0.9 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_0769 -0.9 -0.8 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_2589 -0.8 -0.8 Sigma-S stabilisation anti-adaptor protein compare
EX28DRAFT_4349 -0.8 -1.3 hypothetical protein compare
EX28DRAFT_4531 -0.8 -5.7 thiazole biosynthesis protein ThiH compare
EX28DRAFT_3426 -0.8 -1.0 conserved hypothetical protein EF_0831/AHA_3912 compare
EX28DRAFT_2377 -0.8 -3.2 ABC-type Fe3+-siderophore transport system, permease component compare
EX28DRAFT_3368 -0.8 -0.6 tRNA dimethylallyltransferase compare
EX28DRAFT_0065 -0.8 -1.0 thioredoxin compare
EX28DRAFT_0523 -0.8 -1.0 Glycosyltransferase like family 2 compare
EX28DRAFT_4266 -0.8 -1.4 Fe2+/Zn2+ uptake regulation proteins compare
EX28DRAFT_2996 -0.8 -1.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4513 -0.8 -5.3 Trk-type K+ transport systems, membrane components compare
EX28DRAFT_0392 -0.8 -1.0 hypothetical protein compare
EX28DRAFT_2864 -0.7 -3.8 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_2383 -0.7 -5.5 TonB-dependent siderophore receptor compare
EX28DRAFT_3314 -0.7 -0.6 Factor for inversion stimulation Fis, transcriptional activator compare
EX28DRAFT_2951 -0.7 -1.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1059 -0.7 -1.4 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog compare
EX28DRAFT_0332 -0.7 -5.4 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_2270 -0.7 -0.7 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_4191 -0.7 -1.9 small GTP-binding protein domain compare
EX28DRAFT_4350 -0.7 -0.8 nitrogen regulation protein NR(I) compare
EX28DRAFT_1360 -0.7 -2.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1620 -0.7 -1.0 hypothetical protein compare
EX28DRAFT_0274 -0.7 -1.7 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific compare
EX28DRAFT_3702 -0.7 -2.9 nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19) compare
EX28DRAFT_3297 -0.7 -2.9 ribonuclease, Rne/Rng family compare
EX28DRAFT_4535 -0.7 -1.8 thiamine-phosphate diphosphorylase compare
EX28DRAFT_2796 -0.7 -1.8 transcriptional regulator, DeoR family compare
EX28DRAFT_2867 -0.7 -3.8 glycerate kinase compare
EX28DRAFT_2267 -0.7 -2.2 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_3643 -0.7 -1.6 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_2485 -0.7 -3.2 DNA replication and repair protein RecR compare
EX28DRAFT_0325 -0.7 -3.0 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_3644 -0.7 -2.1 Uncharacterized protein affecting Mg2+/Co2+ transport compare
EX28DRAFT_1644 -0.7 -1.0 Predicted oxidoreductase compare
EX28DRAFT_3089 -0.7 -0.7 Transcriptional regulators compare
EX28DRAFT_1236 -0.7 -1.4 Transcriptional regulator compare
EX28DRAFT_3605 -0.7 -1.3 Fructose-2,6-bisphosphatase compare
EX28DRAFT_0706 -0.7 -1.2 Entner-Doudoroff aldolase compare
EX28DRAFT_3730 -0.7 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
EX28DRAFT_3423 -0.7 -1.5 Soluble cytochrome b562 compare
EX28DRAFT_1330 -0.7 -1.6 hypothetical protein compare
EX28DRAFT_0388 -0.7 -1.7 Putative GTPases (G3E family) compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in no stress control experiments

For no stress control Sucrose across organisms