Experiment set1IT083 for Variovorax sp. OAS795

Compare to:

L-Asparagine carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS06575 -6.0 -5.8 trehalose-phosphatase compare
ABID97_RS05260 -4.7 -2.0 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS15380 -4.5 -12.3 nitrite/sulfite reductase compare
ABID97_RS01565 -4.4 -12.8 DNA starvation/stationary phase protection protein compare
ABID97_RS20615 -4.3 -9.6 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS09180 -4.2 -4.1 DNA polymerase I compare
ABID97_RS25895 -4.1 -2.8 ABC transporter permease compare
ABID97_RS23425 -4.1 -2.8 tRNA-Pro compare
ABID97_RS25015 -3.7 -3.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS08775 -3.6 -2.5 ribosome small subunit-dependent GTPase A compare
ABID97_RS08425 -3.6 -5.5 tryptophan synthase subunit alpha compare
ABID97_RS13860 -3.6 -7.9 hypothetical protein compare
ABID97_RS16600 -3.6 -9.9 CysB family HTH-type transcriptional regulator compare
ABID97_RS12180 -3.5 -2.4 hypothetical protein compare
ABID97_RS05250 -3.5 -8.2 anthranilate synthase component I compare
ABID97_RS15375 -3.4 -7.5 DUF934 domain-containing protein compare
ABID97_RS05275 -3.4 -2.3 anthranilate phosphoribosyltransferase compare
ABID97_RS02600 -3.2 -4.9 homoserine O-acetyltransferase compare
ABID97_RS04760 -3.1 -2.1 SPOR domain-containing protein compare
ABID97_RS10885 -3.1 -7.7 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS16595 -3.1 -4.7 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS06345 -2.9 -4.4 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS03805 -2.9 -1.7 ATP-binding protein compare
ABID97_RS07405 -2.8 -14.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS07775 -2.7 -5.7 phosphoribosylglycinamide formyltransferase compare
ABID97_RS05280 -2.7 -1.9 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS08435 -2.7 -1.8 phosphoribosylanthranilate isomerase compare
ABID97_RS15360 -2.7 -8.7 GTP-binding protein compare
ABID97_RS15370 -2.6 -14.5 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS05755 -2.6 -2.5 glycosyltransferase compare
ABID97_RS23455 -2.5 -3.8 hypothetical protein compare
ABID97_RS17850 -2.4 -1.3 tetratricopeptide repeat protein compare
ABID97_RS02510 -2.4 -18.6 NADP-dependent malic enzyme compare
ABID97_RS23450 -2.4 -4.8 MBOAT family protein compare
ABID97_RS05765 -2.3 -2.7 UDP-glucose 4-epimerase GalE compare
ABID97_RS20980 -2.3 -1.6 transcriptional repressor compare
ABID97_RS14160 -2.3 -7.6 cell division protein ZapE compare
ABID97_RS00255 -2.2 -13.2 type IV pilus twitching motility protein PilT compare
ABID97_RS20610 -2.2 -6.9 DNA-binding protein YbiB compare
ABID97_RS20095 -2.1 -2.5 DNA topoisomerase IV subunit B compare
ABID97_RS16535 -2.1 -7.5 arginine/lysine/ornithine decarboxylase compare
ABID97_RS21150 -2.1 -8.3 FAD-dependent oxidoreductase compare
ABID97_RS05750 -2.1 -2.4 glycosyltransferase compare
ABID97_RS27635 -2.1 -1.2 NAD(P)H-dependent oxidoreductase compare
ABID97_RS06460 -2.1 -2.0 sigma 54-interacting transcriptional regulator compare
ABID97_RS24370 -2.0 -3.5 DUF1841 family protein compare
ABID97_RS16980 -2.0 -8.8 asparaginase conserved
ABID97_RS06450 -2.0 -2.3 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS23915 -2.0 -3.9 heme o synthase compare
ABID97_RS03800 -1.9 -2.6 O-antigen ligase family protein compare
ABID97_RS23440 -1.9 -9.4 A24 family peptidase compare
ABID97_RS15365 -1.9 -4.2 sulfate adenylyltransferase subunit CysD compare
ABID97_RS15665 -1.9 -7.7 [protein-PII] uridylyltransferase compare
ABID97_RS05365 -1.9 -4.2 DUF4390 domain-containing protein compare
ABID97_RS26840 -1.8 -2.1 hypothetical protein compare
ABID97_RS23220 -1.8 -2.0 glutamate synthase subunit beta compare
ABID97_RS17635 -1.8 -3.3 presqualene diphosphate synthase HpnD compare
ABID97_RS03915 -1.8 -7.9 DUF4124 domain-containing protein compare
ABID97_RS16785 -1.7 -2.8 transporter compare
ABID97_RS02110 -1.7 -11.0 type IV pilus modification protein PilV compare
ABID97_RS08220 -1.7 -10.4 phosphoenolpyruvate carboxylase compare
ABID97_RS26845 -1.7 -2.2 carotenoid oxygenase family protein compare
ABID97_RS23430 -1.7 -10.3 type IV-A pilus assembly ATPase PilB compare
ABID97_RS08430 -1.7 -1.6 tryptophan synthase subunit beta compare
ABID97_RS02115 -1.7 -8.9 PilW family protein compare
ABID97_RS09595 -1.7 -1.9 Arc family DNA-binding protein compare
ABID97_RS25345 -1.6 -7.7 transporter associated domain-containing protein compare
ABID97_RS02120 -1.6 -9.2 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS24705 -1.6 -5.5 response regulator compare
ABID97_RS15470 -1.6 -2.4 NADPH-dependent FMN reductase compare
ABID97_RS02125 -1.6 -12.8 PilC/PilY family type IV pilus protein compare
ABID97_RS17330 -1.6 -1.4 adenosylcobinamide-GDP ribazoletransferase compare
ABID97_RS16690 -1.6 -5.6 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS06180 -1.6 -4.3 ATP-dependent protease subunit HslV compare
ABID97_RS02145 -1.6 -7.0 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS14700 -1.6 -3.1 recombination mediator RecR compare
ABID97_RS08710 -1.5 -6.2 polynucleotide adenylyltransferase PcnB compare
ABID97_RS15995 -1.5 -5.2 PilZ domain-containing protein compare
ABID97_RS01825 -1.5 -11.9 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS21945 -1.5 -3.1 hemolysin family protein compare
ABID97_RS24045 -1.5 -3.4 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS23435 -1.5 -9.0 type II secretion system F family protein compare
ABID97_RS21165 -1.4 -2.9 energy-dependent translational throttle protein EttA compare
ABID97_RS17590 -1.4 -8.7 endopeptidase La compare
ABID97_RS06520 -1.4 -1.6 SAM-dependent methyltransferase compare
ABID97_RS14115 -1.4 -3.2 dihydrolipoyl dehydrogenase compare
ABID97_RS07000 -1.4 -7.5 threonine ammonia-lyase, biosynthetic compare
ABID97_RS23225 -1.4 -10.1 glutamate synthase-related protein compare
ABID97_RS22135 -1.4 -1.1 LysR family transcriptional regulator compare
ABID97_RS17085 -1.4 -2.3 ORF6N domain-containing protein compare
ABID97_RS01840 -1.4 -7.9 DUF1631 family protein compare
ABID97_RS14100 -1.4 -8.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS02135 -1.4 -5.1 GspH/FimT family pseudopilin compare
ABID97_RS14975 -1.4 -2.8 hypothetical protein compare
ABID97_RS13865 -1.4 -3.8 hypothetical protein compare
ABID97_RS24920 -1.4 -1.6 Holliday junction branch migration protein RuvA compare
ABID97_RS17970 -1.4 -5.0 protein TolQ compare
ABID97_RS05670 -1.4 -1.8 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS06175 -1.4 -10.1 STAS domain-containing protein compare
ABID97_RS08445 -1.3 -6.7 FimV/HubP family polar landmark protein compare
ABID97_RS13245 -1.3 -1.2 XRE family transcriptional regulator compare
ABID97_RS08480 -1.3 -1.5 citrate synthase compare
ABID97_RS03680 -1.3 -5.2 lysophospholipid transporter LplT compare
ABID97_RS16695 -1.3 -8.9 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS26830 -1.3 -1.7 hypothetical protein compare
ABID97_RS06415 -1.3 -8.5 sigma-54 dependent transcriptional regulator compare
ABID97_RS17655 -1.3 -1.8 HAD-IA family hydrolase compare
ABID97_RS02140 -1.3 -6.6 sugar transferase compare
ABID97_RS14625 -1.3 -4.2 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS22705 -1.3 -8.6 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS23280 -1.2 -5.1 PilN domain-containing protein compare
ABID97_RS09935 -1.2 -6.6 hypothetical protein compare
ABID97_RS24295 -1.2 -1.0 type II secretion system F family protein compare
ABID97_RS13560 -1.2 -1.3 ATP-binding cassette domain-containing protein compare
ABID97_RS28355 -1.2 -1.3 2,5-dihydroxypyridine 5,6-dioxygenase compare
ABID97_RS07435 -1.2 -4.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS02130 -1.2 -7.5 type IV pilin protein compare
ABID97_RS10695 -1.2 -5.3 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS23650 -1.2 -8.2 serine/threonine-protein kinase compare
ABID97_RS23380 -1.2 -8.1 lytic transglycosylase domain-containing protein compare
ABID97_RS15465 -1.2 -8.1 sulfate ABC transporter substrate-binding protein compare
ABID97_RS02460 -1.2 -9.2 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS23270 -1.2 -5.6 pilus assembly protein PilP compare
ABID97_RS05820 -1.2 -4.1 FadR/GntR family transcriptional regulator compare
ABID97_RS02200 -1.2 -10.0 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS12140 -1.1 -5.4 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS10385 -1.1 -1.4 MFS transporter compare
ABID97_RS19375 -1.1 -3.4 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS07430 -1.1 -5.4 pantoate--beta-alanine ligase compare
ABID97_RS28000 -1.1 -0.9 NADPH-dependent FMN reductase compare
ABID97_RS24170 -1.1 -3.0 ATP-binding protein compare
ABID97_RS01755 -1.1 -6.3 pyruvate kinase compare
ABID97_RS06160 -1.1 -5.4 GTP-binding protein compare
ABID97_RS26945 -1.1 -1.2 DUF3606 domain-containing protein compare
ABID97_RS26990 -1.1 -1.3 ornithine carbamoyltransferase compare
ABID97_RS02420 -1.1 -3.9 protealysin inhibitor emfourin compare
ABID97_RS18635 -1.1 -1.3 enoyl-CoA hydratase-related protein compare
ABID97_RS05370 -1.1 -3.8 ATP-binding protein compare
ABID97_RS16920 -1.1 -7.3 NADP-dependent isocitrate dehydrogenase compare
ABID97_RS17200 -1.1 -8.7 ribonuclease R compare
ABID97_RS05515 -1.1 -0.9 AEC family transporter compare
ABID97_RS25405 -1.1 -6.1 16S ribosomal RNA compare
ABID97_RS23285 -1.1 -6.9 pilus assembly protein PilM compare
ABID97_RS20725 -1.1 -4.8 serine O-acetyltransferase compare
ABID97_RS23265 -1.1 -5.1 type IV pilus secretin PilQ compare
ABID97_RS24690 -1.1 -5.4 methyl-accepting chemotaxis protein compare
ABID97_RS10705 -1.0 -3.3 H-NS histone family protein compare
ABID97_RS04960 -1.0 -0.8 ATP-binding protein compare
ABID97_RS15150 -1.0 -1.0 phage tail assembly protein compare
ABID97_RS01380 -1.0 -1.6 LysR substrate-binding domain-containing protein compare
ABID97_RS27450 -1.0 -0.9 biotin-independent malonate decarboxylase subunit gamma compare
ABID97_RS17310 -1.0 -4.7 PLP-dependent aminotransferase family protein compare
ABID97_RS23170 -1.0 -1.7 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
ABID97_RS27720 -1.0 -1.0 fumarate reductase/succinate dehydrogenase flavoprotein subunit compare
ABID97_RS27795 -1.0 -0.8 TetR/AcrR family transcriptional regulator compare
ABID97_RS27015 -1.0 -1.2 DoxX family protein compare
ABID97_RS00490 -1.0 -4.2 D-amino acid aminotransferase compare
ABID97_RS19220 -1.0 -0.9 DNA polymerase Y family protein compare
ABID97_RS28990 -1.0 -4.3 aspartate 1-decarboxylase compare
ABID97_RS27980 -1.0 -1.1 alcohol dehydrogenase catalytic domain-containing protein compare
ABID97_RS04500 -1.0 -1.4 HPr(Ser) kinase/phosphatase compare
ABID97_RS02455 -1.0 -2.4 nucleotidyltransferase family protein compare
ABID97_RS10690 -1.0 -4.7 GlsB/YeaQ/YmgE family stress response membrane protein compare
ABID97_RS08360 -1.0 -3.8 DUF4845 domain-containing protein compare
ABID97_RS14890 -1.0 -4.6 acetolactate synthase small subunit compare
ABID97_RS25100 -1.0 -3.4 hydroxymethylglutaryl-CoA lyase compare
ABID97_RS08200 -1.0 -5.7 LytTR family DNA-binding domain-containing protein compare
ABID97_RS04480 -1.0 -1.6 magnesium/cobalt transporter CorA compare
ABID97_RS08680 -1.0 -1.4 helix-turn-helix domain-containing protein compare
ABID97_RS10720 -1.0 -2.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABID97_RS07870 -1.0 -5.5 SDR family oxidoreductase compare
ABID97_RS03640 -1.0 -3.9 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS17240 -1.0 -6.4 'bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase' pseudo=_no_value transl_table=11 compare
ABID97_RS18205 -1.0 -2.2 XRE family transcriptional regulator compare
ABID97_RS02210 -1.0 -5.1 pilin compare
ABID97_RS01645 -1.0 -3.3 helix-turn-helix transcriptional regulator compare
ABID97_RS04740 -1.0 -1.2 DUF2214 family protein compare
ABID97_RS16315 -1.0 -2.5 hypothetical protein compare
ABID97_RS05055 -1.0 -1.3 tetratricopeptide repeat protein compare
ABID97_RS14260 -0.9 -4.7 FtsH protease activity modulator HflK compare
ABID97_RS26605 -0.9 -1.4 sigma-54 dependent transcriptional regulator compare
ABID97_RS25525 -0.9 -2.7 LacI family DNA-binding transcriptional regulator compare
ABID97_RS17640 -0.9 -1.6 hydroxysqualene dehydroxylase HpnE compare
ABID97_RS23275 -0.9 -5.0 type 4a pilus biogenesis protein PilO compare
ABID97_RS27140 -0.9 -1.3 winged helix-turn-helix domain-containing protein compare
ABID97_RS14105 -0.9 -1.7 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS25125 -0.9 -5.3 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS08250 -0.9 -4.6 RluA family pseudouridine synthase compare
ABID97_RS04685 -0.9 -1.3 LysR substrate-binding domain-containing protein compare
ABID97_RS03140 -0.9 -1.0 tRNA-Gly compare
ABID97_RS17895 -0.9 -3.5 transcriptional regulator NrdR compare
ABID97_RS15480 -0.9 -4.2 sulfonate ABC transporter substrate-binding protein compare
ABID97_RS12995 -0.9 -1.2 hypothetical protein compare
ABID97_RS12415 -0.9 -6.6 class I poly(R)-hydroxyalkanoic acid synthase compare
ABID97_RS14090 -0.9 -1.1 response regulator transcription factor compare
ABID97_RS29305 -0.9 -2.6 YncE family protein compare
ABID97_RS06315 -0.9 -6.3 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS07630 -0.9 -2.3 cytochrome o ubiquinol oxidase subunit III compare
ABID97_RS21770 -0.9 -5.3 aminopeptidase N compare
ABID97_RS24750 -0.8 -4.0 redox-regulated ATPase YchF compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source L-Asparagine in Variovorax sp. OAS795

For carbon source L-Asparagine across organisms