Experiment set1IT083 for Pseudomonas putida KT2440

Compare to:

4-Hydroxyvalerate carbon source (40mM)

200 most important genes:

  gene name fitness t score description  
PP_0422 -5.8 -4.0 Indole-3-glycerol phosphate synthase compare
PP_2790 -5.6 -5.5 Sigma-54 dependent sensory box protein compare
PP_2794 -5.3 -3.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_0691 -5.3 -3.6 Glutamate 5-kinase compare
PP_0293 -5.3 -3.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0184 -5.1 -6.1 Argininosuccinate lyase compare
PP_3511 -4.6 -6.3 Branched-chain-amino-acid aminotransferase compare
PP_1778 -4.6 -7.7 Lipopolysaccharide ABC export system, permease protein compare
PP_0082 -4.5 -5.4 tryptophan synthase alpha chain compare
PP_0967 -4.5 -8.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2327 -4.5 -6.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4999 -4.5 -3.1 dihydroorotase-like protein compare
PP_1088 -4.4 -10.2 Argininosuccinate synthase compare
PP_2335 -4.4 -7.2 methylcitrate synthase compare
PP_2793 -4.4 -3.0 Acyl-CoA dehydrogenase family protein compare
PP_4678 -4.4 -10.9 Ketol-acid reductoisomerase compare
PP_5014 -4.3 -3.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4799 -4.3 -3.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4693 -4.3 -8.6 RNA polymerase-binding transcription factor DksA compare
PP_0966 -4.2 -8.6 Histidinol dehydrogenase compare
PP_1779 -4.2 -8.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_3286 -4.2 -4.9 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_2370 -4.1 -2.8 conserved protein of unknown function compare
PP_2795 -4.1 -4.9 AMP-binding domain protein compare
PP_2433 -4.1 -3.9 conserved protein of unknown function compare
PP_4699 -4.1 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1025 -4.1 -12.4 2-isopropylmalate synthase compare
PP_1995 -4.0 -8.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2791 -4.0 -5.5 4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data) compare
PP_4762 -4.0 -6.7 Acyl-CoA thioesterase II compare
PP_4890 -4.0 -5.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_5289 -4.0 -5.5 Acetylglutamate kinase compare
PP_5185 -4.0 -6.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5015 -4.0 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5128 -4.0 -9.6 Dihydroxy-acid dehydratase compare
PP_4680 -4.0 -10.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5098 -4.0 -7.1 methionine biosynthesis protein MetW compare
PP_4696 -3.9 -7.5 Nitrogen regulation protein NR(I) compare
PP_0083 -3.9 -6.0 tryptophan synthase beta chain compare
PP_1985 -3.9 -4.6 3-isopropylmalate dehydratase large subunit compare
PP_0417 -3.9 -14.4 Anthranilate synthase component 1 compare
PP_4679 -3.9 -5.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2334 -3.9 -6.9 2-methylisocitrate lyase compare
PP_4700 -3.8 -2.6 pantothenate synthetase compare
PP_1328 -3.7 -3.3 Protein MraZ compare
PP_4723 -3.6 -6.5 Carbamoyl-phosphate synthase large chain compare
PP_4724 -3.6 -2.5 Carbamoyl-phosphate synthase small chain compare
PP_4909 -3.6 -7.7 phosphoserine phosphatase compare
PP_5502 -3.6 -5.9 ribosome modulation factor compare
PP_2217 -3.6 -4.8 enoyl-CoA hydratase compare
PP_5095 -3.6 -2.4 pyrroline-5-carboxylate reductase compare
PP_0393 -3.6 -2.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1664 -3.5 -5.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_2336 -3.5 -3.4 aconitate hydratase 1 compare
PP_0965 -3.5 -9.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4571 -3.5 -7.3 cysteine synthase A compare
PP_2001 -3.4 -9.0 O-succinylhomoserine sulfhydrylase compare
PP_2371 -3.4 -4.6 Sulphite reductase hemoprotein, beta subunit compare
PP_3755 -3.4 -6.4 3-hydroxybutyryl-CoA dehydrogenase compare
PP_1988 -3.3 -8.4 3-isopropylmalate dehydrogenase compare
PP_0289 -3.3 -8.3 Imidazoleglycerol-phosphate dehydratase compare
PP_0292 -3.3 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0425 -3.3 -4.4 conserved protein of unknown function compare
PP_0290 -3.3 -8.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5097 -3.3 -11.6 homoserine O-acetyltransferase compare
PP_4058 -3.2 -10.9 1,4-alpha-glucan branching enzyme compare
PP_2337 -3.2 -3.7 aconitate isomerase compare
PP_3754 -3.1 -6.2 Beta-ketothiolase BktB compare
PP_0995 -3.0 -7.2 conserved membrane protein of unknown function compare
PP_2328 -3.0 -4.0 Phosphoadenosine phosphosulfate reductase compare
PP_5346 -2.9 -8.6 pyruvate carboxylase subunit B compare
PP_0421 -2.9 -7.5 Anthranilate phosphoribosyltransferase compare
PP_0951 -2.9 -8.4 Ribosome hibernation promoting factor compare
PP_5350 -2.9 -5.1 Transcriptional regulator, RpiR family compare
PP_4008 -2.9 -7.5 ATP-dependent serine protease compare
PP_2168 -2.9 -10.2 Transaldolase compare
PP_3999 -2.8 -4.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_3649 -2.8 -5.2 Transcriptional regulator, GntR family compare
PP_1826 -2.8 -3.7 Hydrolase, isochorismatase family compare
PP_1986 -2.7 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_5203 -2.7 -7.3 5-formyltetrahydrofolate cyclo-ligase compare
PP_5347 -2.7 -9.7 pyruvate carboxylase subunit A compare
PP_2326 -2.7 -7.9 Universal stress protein compare
PP_4824 -2.7 -7.9 Sensor histidine kinase/response regulator compare
PP_1764 -2.6 -3.9 Phosphoglycolate phosphatase 2 compare
PP_0164 -2.5 -7.5 conserved protein of unknown function compare
PP_3753 -2.5 -6.3 Transcriptional regulator, AraC family compare
PP_2082 -2.5 -11.1 phosphoenolpyruvate synthetase compare
PP_0420 -2.5 -7.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5155 -2.4 -5.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1304 -2.4 -8.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1589 -2.3 -8.9 uridylyltransferase compare
PP_1783 -2.3 -4.2 dTDP-glucose pyrophosphorylase compare
PP_1968 -2.3 -6.9 TetR family transcriptional regulator compare
PP_1079 -2.3 -5.5 Ornithine carbamoyltransferase compare
PP_0405 -2.3 -10.0 conserved protein of unknown function compare
PP_0339 -2.2 -2.6 Pyruvate dehydrogenase E1 component compare
PP_5210 -2.2 -8.6 Alcohol dehydrogenase, zinc-containing compare
PP_4895 -2.2 -4.4 tRNA dimethylallyltransferase compare
PP_2324 -2.1 -5.2 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_0414 -2.1 -5.5 Polyamine ABC transporter, permease protein compare
PP_1215 -2.1 -2.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_1214 -2.1 -3.3 putative transcriptional regulatory protein compare
PP_0218 -2.1 -8.0 Sensory box protein compare
PP_2436 -2.1 -6.2 Transcriptional regulator, LysR family compare
PP_1303 -2.1 -6.5 Sulfate adenylyltransferase subunit 2 compare
PP_0261 -2.0 -5.0 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1351 -2.0 -8.3 putative 2-dehydropantoate 2-reductase compare
PP_0244 -2.0 -4.9 conserved protein of unknown function compare
PP_4342 -2.0 -5.1 flagellar synthesis regulator, putative ATPase compare
PP_2000 -1.9 -2.8 amidophosphoribosyl transferase compare
PP_1216 -1.9 -3.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3662 -1.9 -7.4 conserved protein of unknown function compare
PP_1654 -1.9 -3.4 cysteine synthase B compare
PP_0413 -1.9 -10.5 Polyamine ABC transporter, permease protein compare
PP_1906 -1.8 -4.4 ribosomal large subunit pseudouridine synthase C compare
PP_0291 -1.8 -3.1 conserved protein of unknown function compare
PP_2356 -1.7 -7.5 putative Phytochrome family protein compare
PP_4793 -1.7 -2.5 conserved protein of unknown function compare
PP_4964 -1.7 -3.4 D-erythrose 4-phosphate dehydrogenase compare
PP_2322 -1.6 -3.7 Major outer membrane lipoprotein compare
PP_3555 -1.6 -5.4 putative Transmembrane sensor compare
PP_5348 -1.6 -6.7 Transcriptional regulator, LysR family compare
PP_5311 -1.6 -7.6 putative signal transduction protein compare
PP_1860 -1.5 -4.4 Organic hydroperoxide resistance transcriptional regulator compare
PP_5058 -1.5 -5.4 Carboxy-terminal-processing protease compare
PP_4129 -1.5 -3.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3923 -1.5 -4.6 Phosphoglycerate mutase compare
PP_4379 -1.5 -3.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0406 -1.4 -3.4 Nucleotidyltransferase family protein compare
PP_0065 -1.4 -4.2 NAD-binding component of TrK potassium transporter compare
PP_2302 -1.4 -5.8 DNA-binding, ATP-dependent protease compare
PP_4120 -1.4 -4.0 NADH-quinone oxidoreductase subunit B compare
PP_0185 -1.4 -6.3 Positive alginate biosynthesis regulatory protein compare
PP_4010 -1.4 -2.8 DNA replication inhibitor compare
PP_4130 -1.4 -4.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3731 -1.4 -6.1 Transcriptional regulator, TetR family compare
PP_4695 -1.3 -7.2 Sensory box histidine kinase compare
PP_1355 -1.3 -7.1 Muropeptide permease AmpG compare
PP_4880 -1.3 -7.7 exoribonuclease R compare
PP_2631 -1.3 -1.9 putative cellulose biosynthesis, BcsF/YhjT compare
PP_2402 -1.3 -2.5 putative Sensor histidine kinase compare
PP_5327 -1.3 -4.0 putative phosphate ABC transporter, permease subunit compare
PP_3098 -1.3 -1.4 conserved protein of unknown function compare
PP_4124 -1.3 -4.2 NADH-quinone oxidoreductase subunit G compare
PP_2929 -1.3 -6.4 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4121 -1.3 -4.6 NADH-quinone oxidoreductase subunit C/D compare
PP_0434 -1.3 -4.6 Anhydro-N-acetylmuramic acid kinase compare
PP_1021 -1.3 -3.3 DNA-binding transcriptional regulator compare
PP_4131 -1.2 -4.7 NADH-quinone oxidoreductase subunit N compare
PP_1731 -1.2 -2.9 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_4060 -1.2 -8.1 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_0630 -1.2 -1.2 DNA gyrase inhibitor YacG compare
PP_4685 -1.2 -4.9 conserved protein of unknown function compare
PP_1326 -1.2 -2.1 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_5295 -1.2 -1.5 conserved protein of unknown function compare
PP_5041 -1.2 -7.1 glycogen phosphorylase compare
PP_1695 -1.2 -6.2 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_1493 -1.2 -3.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1217 -1.2 -4.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4937 -1.2 -3.8 toluene tolerance protein compare
PP_1872 -1.2 -6.4 glutamate-pyruvate aminotransferase compare
PP_4004 -1.2 -3.5 DNA translocase FtsK compare
PP_1428 -1.2 -2.2 Sigma factor AlgU negative regulatory protein compare
PP_4362 -1.2 -3.2 conserved protein of unknown function compare
PP_0910 -1.1 -4.6 conserved exported protein of unknown function compare
PP_4988 -1.1 -4.4 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_3819 -1.1 -5.4 glutathione reductase (NADPH) compare
PP_4392 -1.1 -5.3 chemotaxis protein methyltransferase compare
PP_0673 -1.1 -1.4 conserved protein of unknown function compare
PP_2720 -1.1 -1.3 conserved protein of unknown function compare
PP_1055 -1.1 -0.8 Type II secretion pathway protein GspN compare
PP_4546 -1.1 -3.7 ATP-dependent helicase HrpA compare
PP_5198 -1.1 -3.1 conserved protein of unknown function compare
PP_0236 -1.1 -2.2 NAD(P)H-dependent FMN reductase subunit compare
PP_2375 -1.1 -7.1 cobalamin-dependent methionine synthase compare
PP_1733 -1.1 -2.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_4009 -1.1 -2.8 ATP-dependent Clp protease adapter protein ClpS compare
PP_1097 -1.1 -1.3 Methionine--tRNA ligase compare
PP_2145 -1.0 -2.2 beta-N-acetylglucosaminidase compare
PP_4126 -1.0 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_5177 -1.0 -4.4 spermidine/putrescine ABC transporter - permease subunit compare
PP_3248 -1.0 -3.0 Dyp-type peroxidase family protein compare
PP_4917 -1.0 -3.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5073 -1.0 -1.8 conserved exported protein of unknown function compare
PP_4480 -1.0 -5.0 arginine N-succinyltransferase, subunit alpha compare
PP_3539 -1.0 -2.1 putative Transcriptional regulator compare
PP_1941 -1.0 -3.9 conserved protein of unknown function compare
PP_4045 -1.0 -2.5 conserved protein of unknown function compare
PP_3925 -1.0 -6.1 conserved protein of unknown function compare
PP_5236 -1.0 -5.4 conserved protein of unknown function compare
PP_4993 -1.0 -3.9 Glutathione synthetase compare
PP_3102 -1.0 -2.3 conserved protein of unknown function compare
PP_5267 -1.0 -1.6 putative cytochrome c5 compare
PP_4902 -1.0 -2.4 Oligoribonuclease compare
PP_4098 -1.0 -2.0 UvrABC system protein C compare
PP_5035 -1.0 -4.4 Histidine utilization repressor compare
PP_4179 -1.0 -5.6 Chaperone protein HtpG compare
PP_5216 -1.0 -1.6 exopolyphosphatase compare
PP_0439 -1.0 -3.7 conserved protein of unknown function compare


Specific Phenotypes

For 27 genes in this experiment

For carbon source 4-Hydroxyvalerate in Pseudomonas putida KT2440

For carbon source 4-Hydroxyvalerate across organisms