Experiment set1IT083 for Enterobacter asburiae PDN3

Compare to:

M9 with sucrose; no stress control

200 most detrimental genes:

  gene name fitness t score description  
EX28DRAFT_3070 +1.3 2.6 Predicted phosphohydrolases compare
EX28DRAFT_3476 +1.2 1.3 hypothetical protein compare
EX28DRAFT_2243 +1.1 2.0 cation diffusion facilitator family transporter compare
EX28DRAFT_2378 +1.0 2.1 ABC-type enterobactin transport system, permease component compare
EX28DRAFT_0444 +1.0 2.2 Protein-tyrosine-phosphatase compare
EX28DRAFT_1283 +0.9 0.7 hypothetical protein compare
EX28DRAFT_2746 +0.9 2.7 hypothetical protein compare
EX28DRAFT_1590 +0.9 1.5 hypothetical protein compare
EX28DRAFT_1374 +0.9 0.4 Short-chain dehydrogenases of various substrate specificities compare
EX28DRAFT_4426 +0.8 0.9 transcriptional regulator, TetR family compare
EX28DRAFT_2421 +0.8 1.0 Protein of unknown function (DUF1158) compare
EX28DRAFT_0615 +0.8 0.9 flagellar motor switch protein FliG compare
EX28DRAFT_2515 +0.8 1.8 O-6-methylguanine DNA methyltransferase compare
EX28DRAFT_1342 +0.8 0.9 hypothetical protein compare
EX28DRAFT_3574 +0.7 0.7 Protein of unknown function (DUF1435) compare
EX28DRAFT_3624 +0.7 1.8 hypothetical protein compare
EX28DRAFT_3875 +0.7 5.4 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_0904 +0.7 1.7 hypothetical protein compare
EX28DRAFT_1685 +0.7 3.0 FeS assembly ATPase SufC compare
EX28DRAFT_0321 +0.7 0.7 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_4135 +0.7 0.9 hypothetical protein compare
EX28DRAFT_3876 +0.7 4.8 Lipid A core - O-antigen ligase and related enzymes compare
EX28DRAFT_3698 +0.7 1.4 guanosine monophosphate reductase, eukaryotic compare
EX28DRAFT_4269 +0.7 1.0 SOS regulatory protein LexA compare
EX28DRAFT_3948 +0.7 1.8 KAP family P-loop domain compare
EX28DRAFT_2074 +0.7 1.1 type II secretion system protein I compare
EX28DRAFT_3880 +0.7 5.5 Glycosyltransferase compare
EX28DRAFT_3205 +0.7 2.6 Predicted acetyltransferase compare
EX28DRAFT_3732 +0.7 1.0 poly(A) polymerase compare
EX28DRAFT_3519 +0.6 0.7 Predicted transcriptional regulators compare
EX28DRAFT_1628 +0.6 1.0 electron transport complex, RnfABCDGE type, E subunit compare
EX28DRAFT_3383 +0.6 0.9 Alpha/beta hydrolase family compare
EX28DRAFT_2118 +0.6 1.1 arsenate reductase (glutaredoxin) compare
EX28DRAFT_0047 +0.6 1.5 Protein of unknown function (DUF1488) compare
EX28DRAFT_3877 +0.6 5.2 hypothetical protein compare
EX28DRAFT_0524 +0.6 2.2 hypothetical protein compare
EX28DRAFT_3778 +0.6 1.7 Uncharacterised protein family (UPF0253) compare
EX28DRAFT_0518 +0.6 4.0 Bacterial transferase hexapeptide (six repeats) compare
EX28DRAFT_4018 +0.6 1.9 Flavodoxins compare
EX28DRAFT_0328 +0.6 1.0 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_0874 +0.6 1.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2866 +0.6 4.4 Uncharacterized domain of BarA-like signal transduction histidine kinases compare
EX28DRAFT_2773 +0.6 1.1 RNA compare
EX28DRAFT_2883 +0.6 2.2 Transcriptional regulator compare
EX28DRAFT_3815 +0.6 2.4 Sugar kinases, ribokinase family compare
EX28DRAFT_2703 +0.6 1.9 Protein of unknown function (DUF2799) compare
EX28DRAFT_4469 +0.6 3.7 RNA compare
EX28DRAFT_1673 +0.6 1.6 Protein of unknown function (DUF2767) compare
EX28DRAFT_2498 +0.6 1.4 Haemolysin expression modulating protein compare
EX28DRAFT_1956 +0.6 0.6 hypothetical protein compare
EX28DRAFT_3746 +0.6 2.0 Predicted membrane protein compare
EX28DRAFT_1021 +0.6 0.7 Protein of unknown function (DUF2474) compare
EX28DRAFT_2990 +0.6 1.9 Predicted integral membrane protein compare
EX28DRAFT_1384 +0.6 2.1 Predicted ester cyclase compare
EX28DRAFT_3687 +0.6 0.7 D-alanine--D-alanine ligase compare
EX28DRAFT_0364 +0.6 1.6 Alkylated DNA repair protein compare
EX28DRAFT_3713 +0.6 3.6 Protein of unknown function (DUF2950) compare
EX28DRAFT_0521 +0.6 1.5 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_2604 +0.6 1.6 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
EX28DRAFT_1942 +0.6 1.3 amidohydrolase, AtzE family compare
EX28DRAFT_2447 +0.5 1.7 P pilus assembly protein, pilin FimA compare
EX28DRAFT_1868 +0.5 1.3 Protein of unknown function (DUF1439) compare
EX28DRAFT_1212 +0.5 2.1 urea ABC transporter, ATP-binding protein UrtD compare
EX28DRAFT_3134 +0.5 1.4 hypothetical protein compare
EX28DRAFT_0804 +0.5 0.6 type VI secretion system lysozyme-like protein compare
EX28DRAFT_4410 +0.5 1.3 methionine repressor, MetJ compare
EX28DRAFT_4138 +0.5 1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_3294 +0.5 2.6 Transcriptional regulator compare
EX28DRAFT_2086 +0.5 1.3 hypothetical protein compare
EX28DRAFT_1095 +0.5 2.2 ATPase components of various ABC-type transport systems, contain duplicated ATPase compare
EX28DRAFT_2661 +0.5 1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit compare
EX28DRAFT_2884 +0.5 2.3 RNA compare
EX28DRAFT_3245 +0.5 0.7 Predicted NTP binding protein (contains STAS domain) compare
EX28DRAFT_1217 +0.5 1.1 Rhodanese-related sulfurtransferase compare
EX28DRAFT_1877 +0.5 1.0 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
EX28DRAFT_2957 +0.5 2.0 glycine cleavage system T protein compare
EX28DRAFT_3368 +0.5 0.5 tRNA dimethylallyltransferase compare
EX28DRAFT_4237 +0.5 2.0 Transcriptional regulator compare
EX28DRAFT_3514 +0.5 1.8 alkylhydroperoxidase AhpD family core domain compare
EX28DRAFT_2859 +0.5 0.9 hypothetical protein compare
EX28DRAFT_1207 +0.5 1.6 MarB protein compare
EX28DRAFT_0375 +0.5 2.3 Nucleoid-associated protein compare
EX28DRAFT_2638 +0.5 1.9 hypothetical protein compare
EX28DRAFT_3701 +0.5 1.8 prepilin-type N-terminal cleavage/methylation domain compare
EX28DRAFT_1804 +0.5 1.5 spermidine/putrescine ABC transporter ATP-binding subunit compare
EX28DRAFT_0906 +0.5 1.9 Phage baseplate assembly protein W compare
EX28DRAFT_0526 +0.5 1.1 hypothetical protein compare
EX28DRAFT_0073 +0.5 0.5 Negative regulator of sigma E activity compare
EX28DRAFT_1450 +0.5 1.8 Short-chain alcohol dehydrogenase of unknown specificity compare
EX28DRAFT_2142 +0.5 2.1 HAD-superfamily hydrolase, subfamily IIB compare
EX28DRAFT_1573 +0.5 0.4 hypothetical protein compare
EX28DRAFT_1125 +0.5 1.7 D-fructose-responsive transcription factor compare
EX28DRAFT_0633 +0.5 4.1 two component transcriptional regulator, LuxR family compare
EX28DRAFT_1800 +0.5 2.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_3041 +0.5 1.3 hypothetical protein compare
EX28DRAFT_2828 +0.5 0.8 Toxin SymE, type I toxin-antitoxin system compare
EX28DRAFT_2274 +0.5 2.3 Uncharacterized proteins, homologs of lactam utilization protein B compare
EX28DRAFT_3720 +0.5 1.7 Putative multicopper oxidases compare
EX28DRAFT_2336 +0.5 1.3 twin arginine-targeting protein translocase, TatA/E family compare
EX28DRAFT_3434 +0.5 1.0 addiction module antitoxin, RelB/DinJ family compare
EX28DRAFT_3724 +0.5 1.2 ABC-type multidrug transport system, ATPase component compare
EX28DRAFT_1067 +0.5 1.0 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family compare
EX28DRAFT_2956 +0.4 2.7 glycine cleavage system H protein compare
EX28DRAFT_2129 +0.4 2.2 Glucose/sorbosone dehydrogenases compare
EX28DRAFT_4485 +0.4 1.8 uncharacterized domain 1 compare
EX28DRAFT_1272 +0.4 1.6 hypothetical protein compare
EX28DRAFT_3190 +0.4 1.4 Phosphotransferase system, mannose/fructose-specific component IIA compare
EX28DRAFT_1230 +0.4 1.5 tellurite resistance protein TehB compare
EX28DRAFT_1177 +0.4 1.2 Domain of unknown function (DUF4406) compare
EX28DRAFT_2697 +0.4 1.4 ribosomal subunit interface protein compare
EX28DRAFT_1193 +0.4 1.4 diguanylate cyclase (GGDEF) domain compare
EX28DRAFT_0505 +0.4 1.3 colanic acid biosynthesis glycosyl transferase WcaI compare
EX28DRAFT_0601 +0.4 1.1 Protein of unknown function (DUF2525) compare
EX28DRAFT_2760 +0.4 1.5 ribonucleoside-diphosphate reductase 2, operon protein nrdI compare
EX28DRAFT_2440 +0.4 1.8 FOG: EAL domain compare
EX28DRAFT_2737 +0.4 0.9 addiction module antidote protein, HigA family compare
EX28DRAFT_1383 +0.4 0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0920 +0.4 2.2 Transcriptional regulators compare
EX28DRAFT_3420 +0.4 1.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
EX28DRAFT_1610 +0.4 1.2 mannose-6-phosphate isomerase, type 1 (EC 5.3.1.8) compare
EX28DRAFT_0882 +0.4 1.9 hypothetical protein compare
EX28DRAFT_2530 +0.4 1.0 Bacterial nucleoid DNA-binding protein compare
EX28DRAFT_3182 +0.4 2.6 2-hydroxy-3-oxopropionate reductase compare
EX28DRAFT_1579 +0.4 1.7 Bacteriophage Rz lysis protein compare
EX28DRAFT_4316 +0.4 1.9 Group 4 capsule polysaccharide formation lipoprotein gfcB compare
EX28DRAFT_0441 +0.4 0.8 Acetyltransferases compare
EX28DRAFT_3658 +0.4 1.8 thiamine ABC transporter, ATP-binding protein compare
EX28DRAFT_1860 +0.4 3.0 flagella basal body P-ring formation protein FlgA compare
EX28DRAFT_2366 +0.4 1.6 Cytotoxic translational repressor of toxin-antitoxin stability system compare
EX28DRAFT_2633 +0.4 1.5 Uncharacterised nucleotidyltransferase compare
EX28DRAFT_1546 +0.4 2.3 transporter, basic amino acid/polyamine antiporter (APA) family compare
EX28DRAFT_0802 +0.4 1.8 hypothetical protein compare
EX28DRAFT_3162 +0.4 1.1 Transcriptional regulators compare
EX28DRAFT_4540 +0.4 0.6 Endonuclease V (EC 3.1.21.-) compare
EX28DRAFT_2932 +0.4 2.2 Response regulator of citrate/malate metabolism compare
EX28DRAFT_0857 +0.4 0.3 tRNA compare
EX28DRAFT_0686 +0.4 1.1 tRNA (mo5U34)-methyltransferase compare
EX28DRAFT_0523 +0.4 0.6 Glycosyltransferase like family 2 compare
EX28DRAFT_0843 +0.4 0.6 nitrate ABC transporter, permease protein compare
EX28DRAFT_2560 +0.4 1.3 Predicted transcriptional regulator compare
EX28DRAFT_3034 +0.4 2.2 hypothetical protein compare
EX28DRAFT_4543 +0.4 2.4 Protein of unknown function (DUF1481) compare
EX28DRAFT_2489 +0.4 1.2 adenine phosphoribosyltransferase (EC 2.4.2.7) compare
EX28DRAFT_1307 +0.4 0.5 hypothetical protein compare
EX28DRAFT_2067 +0.4 0.6 Transglycosylase SLT domain compare
EX28DRAFT_2036 +0.4 1.9 DMSO reductase anchor subunit compare
EX28DRAFT_2727 +0.4 2.5 Uncharacterized conserved protein compare
EX28DRAFT_0519 +0.4 2.2 Predicted nucleoside-diphosphate sugar epimerases compare
EX28DRAFT_4256 +0.4 0.9 hypothetical protein compare
EX28DRAFT_2621 +0.4 1.2 hypothetical protein compare
EX28DRAFT_3042 +0.4 1.4 hypothetical protein compare
EX28DRAFT_3028 +0.4 1.8 Glutathione S-transferase compare
EX28DRAFT_3854 +0.4 1.4 Transcriptional regulators compare
EX28DRAFT_3779 +0.4 1.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0504 +0.4 1.8 ADP-ribose pyrophosphatase compare
EX28DRAFT_2287 +0.4 2.1 phosphoglucomutase, alpha-D-glucose phosphate-specific compare
EX28DRAFT_1477 +0.4 0.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1562 +0.4 1.0 Phage-related protein compare
EX28DRAFT_0631 +0.4 2.5 DNA-binding HTH domain-containing proteins compare
EX28DRAFT_2355 +0.4 1.3 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
EX28DRAFT_1763 +0.4 0.8 Glutamate dehydrogenase/leucine dehydrogenase compare
EX28DRAFT_0437 +0.4 1.1 two component transcriptional regulator, LytTR family compare
EX28DRAFT_3487 +0.4 1.2 hypothetical protein compare
EX28DRAFT_1524 +0.4 1.5 Dioxygenases related to 2-nitropropane dioxygenase compare
EX28DRAFT_4447 +0.4 2.2 PPIC-type PPIASE domain compare
EX28DRAFT_1446 +0.4 2.0 hypothetical protein compare
EX28DRAFT_2944 +0.4 0.9 Protein-disulfide isomerase compare
EX28DRAFT_3924 +0.4 2.0 hydroxyisourate hydrolase compare
EX28DRAFT_2630 +0.4 1.5 hypothetical protein compare
EX28DRAFT_2787 +0.4 1.0 ABC-type metal ion transport system, periplasmic component/surface adhesin compare
EX28DRAFT_1684 +0.4 1.8 FeS assembly protein SufD compare
EX28DRAFT_1318 +0.4 0.9 hypothetical protein compare
EX28DRAFT_1113 +0.4 1.9 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain compare
EX28DRAFT_1089 +0.4 1.3 polyphosphate kinase 2, PA0141 family compare
EX28DRAFT_1569 +0.4 1.8 hypothetical protein compare
EX28DRAFT_3135 +0.4 1.4 hypothetical protein compare
EX28DRAFT_1513 +0.4 2.3 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases compare
EX28DRAFT_1506 +0.4 1.2 Acid shock protein repeat compare
EX28DRAFT_0646 +0.4 0.5 hypothetical protein compare
EX28DRAFT_3208 +0.4 2.1 Collagenase and related proteases compare
EX28DRAFT_1487 +0.4 1.3 ABC-type proline/glycine betaine transport systems, permease component compare
EX28DRAFT_2511 +0.4 1.0 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
EX28DRAFT_0791 +0.4 0.6 type VI secretion-associated protein, BMA_A0400 family compare
EX28DRAFT_2448 +0.4 2.6 P pilus assembly protein, pilin FimA compare
EX28DRAFT_3597 +0.4 0.9 DNA repair protein RadA compare
EX28DRAFT_2152 +0.4 0.6 Bacterial regulatory proteins, luxR family compare
EX28DRAFT_4301 +0.4 1.9 Protein of unknown function (DUF2500) compare
EX28DRAFT_0091 +0.4 0.3 hypothetical protein compare
EX28DRAFT_1139 +0.3 1.2 hypothetical protein compare
EX28DRAFT_0907 +0.3 1.5 Phage-related baseplate assembly protein compare
EX28DRAFT_1522 +0.3 0.7 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
EX28DRAFT_1252 +0.3 0.4 TIGR00156 family protein compare
EX28DRAFT_0513 +0.3 2.1 UDP-glucose pyrophosphorylase regulatory subunit compare
EX28DRAFT_3550 +0.3 0.9 Predicted acetyltransferase compare
EX28DRAFT_3747 +0.3 1.6 ABC-type Fe3+-hydroxamate transport system, periplasmic component compare
EX28DRAFT_2715 +0.3 1.4 Putative Mg2+ and Co2+ transporter CorB compare
EX28DRAFT_3468 +0.3 1.3 YecR-like lipoprotein compare
EX28DRAFT_1096 +0.3 1.8 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components compare
EX28DRAFT_3973 +0.3 1.5 Molecular chaperone (small heat shock protein) compare
EX28DRAFT_2769 +0.3 2.6 drug resistance transporter, EmrB/QacA subfamily compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in no stress control experiments

For no stress control Sucrose across organisms