Experiment set1IT082 for Pseudomonas putida KT2440

Compare to:

4-Hydroxyvalerate carbon source (40mM)

Genes with specific phenotypes:

  gene name fitness t score description  
PP_4762 -5.1 -6.1 Acyl-CoA thioesterase II compare
PP_2791 -4.8 -5.6 4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data) compare
PP_2790 -4.7 -9.0 Sigma-54 dependent sensory box protein compare
PP_3754 -3.8 -7.0 Beta-ketothiolase BktB compare
PP_4571 -3.6 -8.0 cysteine synthase A compare
PP_2082 -3.4 -13.3 phosphoenolpyruvate synthetase compare
PP_3755 -3.3 -7.0 3-hydroxybutyryl-CoA dehydrogenase compare
PP_3753 -2.8 -7.4 Transcriptional regulator, AraC family compare
PP_2326 -2.8 -7.9 Universal stress protein compare
PP_5210 -2.6 -10.2 Alcohol dehydrogenase, zinc-containing compare
PP_1968 -2.3 -7.2 TetR family transcriptional regulator compare
PP_2436 -2.2 -7.0 Transcriptional regulator, LysR family compare
PP_3923 -1.7 -5.4 Phosphoglycerate mutase compare
PP_0413 -1.6 -10.5 Polyamine ABC transporter, permease protein compare
PP_1351 -1.6 -7.8 putative 2-dehydropantoate 2-reductase compare
PP_3555 -1.6 -5.6 putative Transmembrane sensor compare
PP_3731 -1.4 -6.1 Transcriptional regulator, TetR family compare
PP_1695 -1.4 -7.5 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_5041 -1.0 -6.8 glycogen phosphorylase compare
PP_2457 +1.1 6.2 DNA-binding transcriptional repressor compare
PP_0353 +1.2 8.3 Exonuclease compare
PP_2437 +1.4 7.8 putative Acyl-CoA dehydrogenase compare
PP_1761 +1.4 11.6 diguanylate cyclase with phosphodiesterase domain compare
PP_2797 +1.5 10.3 acetate permease compare
PP_4907 +1.5 8.6 Thiosulfate sulfurtransferase compare
PP_4629 +1.7 6.2 Sensory box protein compare
PP_0742 +1.9 13.3 conserved exported protein of unknown function compare
PP_1236 +2.2 13.9 putative Glycine cleavage system transcriptional repressor compare


Specific phenotypes for carbon source 4-Hydroxyvalerate across organisms