Experiment set1IT082 for Enterobacter asburiae PDN3

Compare to:

M9 with sucrose; no stress control

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_4419 -6.3 -3.4 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_4544 -5.8 -1.6 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_3667 -4.9 -4.0 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_0536 -4.8 -4.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_4445 -4.7 -6.8 Transcriptional regulator compare
EX28DRAFT_2265 -4.6 -1.7 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_4421 -4.5 -1.2 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_0534 -4.2 -5.7 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_4420 -3.9 -1.5 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_0972 -3.9 -2.3 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_3668 -3.9 -10.0 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_0535 -3.8 -11.4 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_2916 -3.7 -8.7 diaminopimelate decarboxylase compare
EX28DRAFT_0538 -3.7 -8.3 histidinol-phosphate aminotransferase compare
EX28DRAFT_2651 -3.7 -6.3 glutamate 5-kinase compare
EX28DRAFT_2701 -3.6 -7.6 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_4386 -3.5 -3.6 Signal transduction histidine kinase compare
EX28DRAFT_2027 -3.5 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_4493 -3.4 -7.5 Transcriptional regulator compare
EX28DRAFT_0046 -3.3 -3.5 shikimate dehydrogenase compare
EX28DRAFT_4418 -3.3 -6.8 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_2252 -3.3 -2.6 TolA protein compare
EX28DRAFT_3711 -3.2 -1.2 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_4443 -3.2 -10.4 dihydroxy-acid dehydratase compare
EX28DRAFT_4405 -3.2 -0.8 ATP-dependent protease HslVU, peptidase subunit compare
EX28DRAFT_0537 -3.2 -7.5 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_2650 -3.1 -7.9 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_2851 -3.1 -4.5 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_4446 -3.1 -6.7 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_2853 -3.1 -8.6 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_4153 -3.0 -2.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_2585 -3.0 -3.0 pyrroline-5-carboxylate reductase compare
EX28DRAFT_3616 -3.0 -3.0 threonine synthase compare
EX28DRAFT_2548 -3.0 -4.7 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_4422 -2.9 -6.6 argininosuccinate lyase compare
EX28DRAFT_3461 -2.9 -6.8 ornithine carbamoyltransferase compare
EX28DRAFT_0540 -2.9 -7.3 ATP phosphoribosyltransferase compare
EX28DRAFT_3671 -2.9 -4.0 RNA compare
EX28DRAFT_0933 -2.8 -10.6 tryptophan synthase, beta subunit compare
EX28DRAFT_3710 -2.8 -7.1 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_0214 -2.8 -4.5 cysteine synthase A compare
EX28DRAFT_4331 -2.8 -9.0 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_3224 -2.7 -7.2 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_0539 -2.7 -5.6 histidinol dehydrogenase compare
EX28DRAFT_0073 -2.7 -1.0 Negative regulator of sigma E activity compare
EX28DRAFT_3614 -2.7 -7.7 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_3670 -2.7 -6.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_0934 -2.7 -8.8 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_2272 -2.7 -8.0 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_4155 -2.7 -2.7 DNA adenine methylase (dam) compare
EX28DRAFT_0533 -2.6 -5.7 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_0284 -2.6 -7.6 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_2917 -2.6 -4.0 Transcriptional regulator compare
EX28DRAFT_3669 -2.6 -6.7 3-isopropylmalate dehydrogenase compare
EX28DRAFT_3046 -2.6 -6.6 cystathionine beta-lyase, bacterial compare
EX28DRAFT_0932 -2.5 -3.9 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_2849 -2.5 -5.1 uroporphyrin-III C-methyltransferase compare
EX28DRAFT_4156 -2.5 -2.5 ribulose-phosphate 3-epimerase compare
EX28DRAFT_4411 -2.5 -7.3 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_2589 -2.4 -1.1 Sigma-S stabilisation anti-adaptor protein compare
EX28DRAFT_0167 -2.4 -2.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_0936 -2.4 -5.4 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_2250 -2.3 -2.8 peptidoglycan-associated lipoprotein compare
EX28DRAFT_2852 -2.2 -7.3 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_2945 -2.2 -1.9 tyrosine recombinase XerD compare
EX28DRAFT_2699 -2.2 -5.3 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_3646 -2.1 -5.8 4-hydroxythreonine-4-phosphate dehydrogenase compare
EX28DRAFT_2425 -2.1 -1.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2531 -2.1 -1.9 endopeptidase La compare
EX28DRAFT_2848 -2.0 -6.4 sulfate adenylyltransferase, small subunit compare
EX28DRAFT_2893 -2.0 -6.2 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_4444 -2.0 -4.1 threonine ammonia-lyase, biosynthetic, long form compare
EX28DRAFT_0272 -2.0 -2.0 phosphohistidine phosphatase, SixA compare
EX28DRAFT_0935 -2.0 -4.9 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_0111 -2.0 -2.2 FeS cluster assembly scaffold IscU compare
EX28DRAFT_4442 -1.9 -6.0 branched-chain amino acid aminotransferase, group I compare
EX28DRAFT_0286 -1.9 -1.6 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_3879 -1.8 -3.6 Glycosyltransferase compare
EX28DRAFT_1396 -1.8 -1.1 Amidases related to nicotinamidase compare
EX28DRAFT_3401 -1.8 -0.9 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_1692 -1.7 -1.2 Biofilm development protein YmgB/AriR compare
EX28DRAFT_3936 -1.7 -1.9 hypothetical protein compare
EX28DRAFT_2847 -1.7 -7.0 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_0804 -1.7 -0.9 type VI secretion system lysozyme-like protein compare
EX28DRAFT_3647 -1.6 -2.8 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_2371 -1.6 -2.6 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
EX28DRAFT_2641 -1.6 -2.2 Ash protein family compare
EX28DRAFT_0730 -1.6 -1.3 YobH-like protein compare
EX28DRAFT_3276 -1.5 -4.2 glutamate synthase small subunit family protein, proteobacterial compare
EX28DRAFT_1841 -1.5 -0.9 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_3418 -1.5 -1.0 Bacterial regulatory helix-turn-helix protein, lysR family compare
EX28DRAFT_0292 -1.4 -2.2 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_1111 -1.4 -2.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
EX28DRAFT_3613 -1.4 -4.3 RNA compare
EX28DRAFT_1941 -1.4 -1.4 Protein of unknown function (DUF4089) compare
EX28DRAFT_4271 -1.4 -0.8 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_0116 -1.4 -2.0 FeS assembly protein IscX compare
EX28DRAFT_1123 -1.4 -4.6 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_2702 -1.4 -4.4 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_1620 -1.4 -1.3 hypothetical protein compare
EX28DRAFT_4478 -1.4 -3.3 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_2043 -1.3 -5.0 transcriptional regulator, AsnC family compare
EX28DRAFT_2255 -1.3 -3.6 tol-pal system-associated acyl-CoA thioesterase compare
EX28DRAFT_2240 -1.3 -2.1 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_1293 -1.3 -0.8 hypothetical protein compare
EX28DRAFT_0494 -1.3 -0.9 Protein-tyrosine-phosphatase compare
EX28DRAFT_2075 -1.3 -2.6 type II secretion system protein H compare
EX28DRAFT_1300 -1.3 -1.3 hypothetical protein compare
EX28DRAFT_1130 -1.3 -2.2 RNA polymerase sigma factor, sigma-70 family compare
EX28DRAFT_4170 -1.3 -3.6 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_4152 -1.2 -0.5 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_2846 -1.2 -2.9 adenylyl-sulfate kinase compare
EX28DRAFT_0922 -1.2 -1.7 TonB family C-terminal domain compare
EX28DRAFT_1121 -1.2 -1.9 Sugar kinases, ribokinase family compare
EX28DRAFT_4452 -1.2 -1.7 thioredoxin compare
EX28DRAFT_1124 -1.2 -5.9 sucrose-6-phosphate hydrolase compare
EX28DRAFT_1309 -1.1 -1.2 hypothetical protein compare
EX28DRAFT_3708 -1.1 -1.1 Transcriptional regulators compare
EX28DRAFT_1360 -1.1 -1.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4440 -1.1 -3.0 acetolactate synthase, large subunit (EC 2.2.1.6) compare
EX28DRAFT_0274 -1.1 -2.8 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific compare
EX28DRAFT_3368 -1.1 -0.5 tRNA dimethylallyltransferase compare
EX28DRAFT_4477 -1.1 -1.8 Predicted small periplasmic lipoprotein compare
EX28DRAFT_1305 -1.1 -2.0 hypothetical protein compare
EX28DRAFT_4212 -1.1 -0.6 Acetyltransferase (GNAT) family compare
EX28DRAFT_3171 -1.1 -1.4 Predicted membrane protein compare
EX28DRAFT_0125 -1.1 -0.6 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_1050 -1.1 -1.9 luciferase family oxidoreductase, group 1 compare
EX28DRAFT_3643 -1.1 -1.7 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_1295 -1.1 -1.3 Protein of unknown function (DUF2570) compare
EX28DRAFT_3345 -1.0 -1.3 Predicted small secreted protein compare
EX28DRAFT_0277 -1.0 -1.1 Predicted permeases compare
EX28DRAFT_0948 -1.0 -1.1 hypothetical protein compare
EX28DRAFT_3929 -1.0 -1.6 Predicted Zn-dependent hydrolases of the beta-lactamase fold compare
EX28DRAFT_2532 -1.0 -2.0 RNA compare
EX28DRAFT_0399 -1.0 -2.0 Transcriptional regulator compare
EX28DRAFT_2313 -1.0 -2.5 Putative Mg2+ and Co2+ transporter CorC compare
EX28DRAFT_0285 -1.0 -1.6 Aspartate-semialdehyde dehydrogenase compare
EX28DRAFT_4077 -1.0 -0.7 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
EX28DRAFT_1122 -1.0 -4.3 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_0531 -1.0 -3.8 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_3729 -1.0 -3.8 pantoate--beta-alanine ligase compare
EX28DRAFT_3383 -1.0 -0.8 Alpha/beta hydrolase family compare
EX28DRAFT_4015 -1.0 -1.0 F0F1-type ATP synthase, subunit I compare
EX28DRAFT_0593 -0.9 -4.7 DNA-methyltransferase (dcm) compare
EX28DRAFT_2271 -0.9 -2.1 hypothetical protein compare
EX28DRAFT_2546 -0.9 -2.6 2-dehydropantoate 2-reductase compare
EX28DRAFT_2864 -0.9 -3.6 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_0523 -0.9 -0.8 Glycosyltransferase like family 2 compare
EX28DRAFT_1539 -0.9 -3.2 O-6-methylguanine DNA methyltransferase compare
EX28DRAFT_2758 -0.9 -1.6 Uncharacterized conserved protein compare
EX28DRAFT_3566 -0.9 -1.4 Uncharacterized conserved protein compare
EX28DRAFT_2270 -0.9 -0.6 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_3275 -0.9 -5.2 Glutamate synthase domain 2 compare
EX28DRAFT_0202 -0.9 -1.3 Protein of unknown function (DUF2919) compare
EX28DRAFT_1163 -0.9 -3.4 Transcriptional regulator compare
EX28DRAFT_3901 -0.9 -3.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_0071 -0.8 -5.0 L-aspartate oxidase (EC 1.4.3.16) compare
EX28DRAFT_3852 -0.8 -1.2 Protein of unknown function (DUF2810) compare
EX28DRAFT_0038 -0.8 -0.8 K+ transport systems, NAD-binding component compare
EX28DRAFT_3189 -0.8 -1.5 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID compare
EX28DRAFT_4534 -0.8 -1.9 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
EX28DRAFT_3891 -0.8 -1.9 transcriptional regulator, TetR family compare
EX28DRAFT_2819 -0.8 -1.7 hydrogenase assembly chaperone HypC/HupF compare
EX28DRAFT_2938 -0.8 -1.1 tRNA compare
EX28DRAFT_1167 -0.8 -0.5 Uncharacterized conserved protein compare
EX28DRAFT_0206 -0.8 -2.0 sulfate ABC transporter, permease protein CysT compare
EX28DRAFT_0910 -0.8 -1.4 Caudovirales tail fibre assembly protein compare
EX28DRAFT_2721 -0.8 -1.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3777 -0.8 -2.1 transcriptional antiterminator, Rof compare
EX28DRAFT_1376 -0.8 -0.8 hypothetical protein compare
EX28DRAFT_0434 -0.8 -0.8 hypothetical protein compare
EX28DRAFT_2178 -0.8 -2.4 hypothetical protein compare
EX28DRAFT_0715 -0.8 -1.5 Protein of unknown function (DUF2511) compare
EX28DRAFT_0219 -0.8 -2.5 Predicted Na+-dependent transporter compare
EX28DRAFT_0769 -0.8 -0.7 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_1596 -0.8 -0.5 Protein of unknown function (DUF1019) compare
EX28DRAFT_2497 -0.8 -2.8 Biofilm formation regulator YbaJ compare
EX28DRAFT_1492 -0.8 -1.0 dethiobiotin synthase compare
EX28DRAFT_4286 -0.8 -2.9 ABC-type branched-chain amino acid transport systems, ATPase component compare
EX28DRAFT_3481 -0.8 -1.3 hypothetical protein compare
EX28DRAFT_2424 -0.8 -2.6 transcriptional regulator, TetR family compare
EX28DRAFT_1716 -0.8 -2.4 ABC-type cobalamin transport system, ATPase component compare
EX28DRAFT_0132 -0.8 -1.7 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_1438 -0.8 -1.2 Transcriptional regulators compare
EX28DRAFT_4413 -0.8 -3.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
EX28DRAFT_0706 -0.7 -0.8 Entner-Doudoroff aldolase compare
EX28DRAFT_0693 -0.7 -0.7 DNA-binding regulatory protein, YebC/PmpR family compare
EX28DRAFT_2008 -0.7 -2.7 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_0092 -0.7 -0.8 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_0352 -0.7 -2.4 Ferredoxin compare
EX28DRAFT_2216 -0.7 -2.6 biotin synthase (EC 2.8.1.6) compare
EX28DRAFT_2539 -0.7 -1.9 cytochrome o ubiquinol oxidase subunit II compare
EX28DRAFT_0129 -0.7 -0.5 RNA compare
EX28DRAFT_3137 -0.7 -0.7 Predicted transcriptional regulators compare
EX28DRAFT_3987 -0.7 -3.0 DNA replication and repair protein RecF compare
EX28DRAFT_2256 -0.7 -1.8 cyd operon protein YbgE compare
EX28DRAFT_1772 -0.7 -1.7 methionine-R-sulfoxide reductase compare
EX28DRAFT_3883 -0.7 -1.9 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_3103 -0.7 -2.6 G/U mismatch-specific uracil-DNA glycosylase (EC 3.2.2.-) compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in no stress control experiments

For no stress control Sucrose across organisms