Experiment set1IT080 for Variovorax sp. OAS795

Compare to:

L-Histidine carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS16595 -7.9 -4.8 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS03440 -7.5 -7.3 formimidoylglutamate deiminase conserved
ABID97_RS20615 -7.3 -6.5 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS03425 -6.4 -7.7 urocanate hydratase conserved
ABID97_RS07430 -6.3 -8.4 pantoate--beta-alanine ligase compare
ABID97_RS03445 -6.2 -9.2 N-formylglutamate deformylase conserved
ABID97_RS01565 -6.1 -11.0 DNA starvation/stationary phase protection protein compare
ABID97_RS24040 -6.1 -2.0 MarR family transcriptional regulator compare
ABID97_RS15380 -5.9 -11.4 nitrite/sulfite reductase compare
ABID97_RS06575 -5.8 -5.7 trehalose-phosphatase compare
ABID97_RS16600 -5.7 -6.8 CysB family HTH-type transcriptional regulator compare
ABID97_RS03435 -5.5 -7.6 imidazolonepropionase conserved
ABID97_RS07415 -5.4 -15.2 quinolinate synthase NadA compare
ABID97_RS17265 -5.3 -4.4 two-component system response regulator OmpR compare
ABID97_RS03400 -5.3 -7.5 ABC transporter substrate-binding protein compare
ABID97_RS07435 -5.2 -6.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS22760 -5.2 -3.5 TetR/AcrR family transcriptional regulator compare
ABID97_RS14095 -5.2 -6.2 PAS domain S-box protein compare
ABID97_RS24170 -5.1 -3.5 ATP-binding protein compare
ABID97_RS16535 -5.1 -5.0 arginine/lysine/ornithine decarboxylase compare
ABID97_RS21945 -5.0 -4.8 hemolysin family protein compare
ABID97_RS07405 -4.9 -11.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS10355 -4.8 -6.9 FadR/GntR family transcriptional regulator compare
ABID97_RS15375 -4.8 -4.3 DUF934 domain-containing protein compare
ABID97_RS03405 -4.8 -9.0 ABC transporter permease compare
ABID97_RS03410 -4.8 -4.3 ABC transporter ATP-binding protein compare
ABID97_RS05260 -4.7 -1.5 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS17590 -4.7 -13.9 endopeptidase La compare
ABID97_RS28355 -4.7 -1.5 2,5-dihydroxypyridine 5,6-dioxygenase compare
ABID97_RS07855 -4.7 -3.6 ABC transporter ATP-binding protein compare
ABID97_RS07000 -4.4 -8.4 threonine ammonia-lyase, biosynthetic compare
ABID97_RS05250 -4.3 -6.5 anthranilate synthase component I compare
ABID97_RS14265 -4.2 -7.1 protease modulator HflC compare
ABID97_RS16915 -4.2 -9.6 ATP-dependent Clp protease adapter ClpS compare
ABID97_RS13860 -4.2 -5.0 hypothetical protein compare
ABID97_RS21150 -4.1 -8.6 FAD-dependent oxidoreductase compare
ABID97_RS17270 -4.1 -8.3 ATP-binding protein compare
ABID97_RS20405 -4.1 -7.8 MarR family transcriptional regulator compare
ABID97_RS25525 -4.1 -2.5 LacI family DNA-binding transcriptional regulator compare
ABID97_RS16910 -4.1 -11.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS08425 -4.0 -3.9 tryptophan synthase subunit alpha compare
ABID97_RS14260 -4.0 -7.6 FtsH protease activity modulator HflK compare
ABID97_RS12140 -4.0 -8.1 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS24055 -4.0 -3.3 TetR/AcrR family transcriptional regulator compare
ABID97_RS24920 -3.9 -2.2 Holliday junction branch migration protein RuvA compare
ABID97_RS07840 -3.9 -8.8 branched-chain amino acid ABC transporter permease compare
ABID97_RS07410 -3.8 -7.4 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS25015 -3.8 -2.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS07850 -3.8 -7.3 ABC transporter ATP-binding protein compare
ABID97_RS09180 -3.8 -4.5 DNA polymerase I compare
ABID97_RS03420 -3.8 -2.4 histidine ammonia-lyase compare
ABID97_RS13450 -3.7 -2.4 TetR/AcrR family transcriptional regulator compare
ABID97_RS10885 -3.7 -4.4 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS25345 -3.7 -9.9 transporter associated domain-containing protein compare
ABID97_RS06345 -3.6 -2.5 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS07845 -3.6 -12.4 ABC transporter ATP-binding protein compare
ABID97_RS19065 -3.6 -5.0 GntR family transcriptional regulator compare
ABID97_RS15365 -3.6 -6.3 sulfate adenylyltransferase subunit CysD compare
ABID97_RS13990 -3.6 -2.5 amino acid aminotransferase compare
ABID97_RS08250 -3.6 -9.4 RluA family pseudouridine synthase compare
ABID97_RS01105 -3.5 -2.3 AMP-binding protein compare
ABID97_RS16290 -3.5 -6.7 protein-glutamate O-methyltransferase CheR compare
ABID97_RS05775 -3.5 -14.7 catalase compare
ABID97_RS03125 -3.4 -9.2 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS10295 -3.4 -1.6 winged helix-turn-helix transcriptional regulator compare
ABID97_RS19025 -3.4 -1.1 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS07440 -3.3 -12.9 L-aspartate oxidase compare
ABID97_RS15370 -3.3 -14.5 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS15465 -3.3 -15.2 sulfate ABC transporter substrate-binding protein compare
ABID97_RS23220 -3.3 -1.4 glutamate synthase subunit beta compare
ABID97_RS16565 -3.3 -12.2 branched-chain amino acid ABC transporter substrate-binding protein compare
ABID97_RS06060 -3.3 -1.5 hypothetical protein compare
ABID97_RS02460 -3.3 -18.0 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS22625 -3.3 -12.9 HAMP domain-containing sensor histidine kinase compare
ABID97_RS02510 -3.3 -22.9 NADP-dependent malic enzyme compare
ABID97_RS05275 -3.3 -2.1 anthranilate phosphoribosyltransferase compare
ABID97_RS21770 -3.2 -12.1 aminopeptidase N compare
ABID97_RS11640 -3.2 -9.4 TetR family transcriptional regulator compare
ABID97_RS05925 -3.2 -10.9 LysR substrate-binding domain-containing protein compare
ABID97_RS02600 -3.1 -4.3 homoserine O-acetyltransferase compare
ABID97_RS08240 -3.1 -2.3 heme biosynthesis HemY N-terminal domain-containing protein compare
ABID97_RS12180 -3.1 -2.1 hypothetical protein compare
ABID97_RS28990 -3.1 -7.5 aspartate 1-decarboxylase compare
ABID97_RS17600 -3.1 -2.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS04760 -3.1 -2.0 SPOR domain-containing protein compare
ABID97_RS14080 -3.0 -16.9 M3 family metallopeptidase compare
ABID97_RS04480 -3.0 -2.1 magnesium/cobalt transporter CorA compare
ABID97_RS25085 -3.0 -3.6 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS11170 -3.0 -4.9 GntR family transcriptional regulator compare
ABID97_RS03805 -3.0 -1.4 ATP-binding protein compare
ABID97_RS20095 -3.0 -2.0 DNA topoisomerase IV subunit B compare
ABID97_RS22620 -3.0 -9.3 response regulator transcription factor compare
ABID97_RS16690 -2.9 -6.0 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS15480 -2.9 -4.3 sulfonate ABC transporter substrate-binding protein compare
ABID97_RS15360 -2.9 -7.4 GTP-binding protein compare
ABID97_RS28635 -2.9 -4.8 IclR family transcriptional regulator compare
ABID97_RS09490 -2.9 -1.3 LapA family protein compare
ABID97_RS14090 -2.9 -1.3 response regulator transcription factor compare
ABID97_RS03110 -2.8 -5.8 helix-turn-helix transcriptional regulator compare
ABID97_RS24500 -2.8 -8.0 oxalyl-CoA decarboxylase compare
ABID97_RS14625 -2.8 -2.9 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS14925 -2.8 -10.1 arginyltransferase compare
ABID97_RS07345 -2.7 -3.7 hypothetical protein compare
ABID97_RS14575 -2.7 -9.2 polyphosphate kinase 1 compare
ABID97_RS02060 -2.7 -10.1 TonB-dependent siderophore receptor compare
ABID97_RS01570 -2.6 -9.0 LysR substrate-binding domain-containing protein compare
ABID97_RS15470 -2.6 -2.6 NADPH-dependent FMN reductase compare
ABID97_RS05280 -2.6 -1.8 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS15665 -2.6 -7.6 [protein-PII] uridylyltransferase compare
ABID97_RS08220 -2.6 -11.3 phosphoenolpyruvate carboxylase compare
ABID97_RS03910 -2.5 -1.7 orotate phosphoribosyltransferase compare
ABID97_RS05765 -2.5 -1.7 UDP-glucose 4-epimerase GalE compare
ABID97_RS16580 -2.5 -3.3 leucyl aminopeptidase compare
ABID97_RS14975 -2.5 -4.4 hypothetical protein compare
ABID97_RS07170 -2.4 -9.7 hemolysin family protein compare
ABID97_RS08435 -2.4 -1.6 phosphoribosylanthranilate isomerase compare
ABID97_RS06190 -2.4 -6.7 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS02275 -2.3 -5.1 recombinase RecA compare
ABID97_RS17895 -2.3 -6.3 transcriptional regulator NrdR compare
ABID97_RS09955 -2.3 -6.5 exodeoxyribonuclease III compare
ABID97_RS04960 -2.2 -1.0 ATP-binding protein compare
ABID97_RS14700 -2.2 -3.2 recombination mediator RecR compare
ABID97_RS23915 -2.2 -3.9 heme o synthase compare
ABID97_RS05755 -2.2 -2.6 glycosyltransferase compare
ABID97_RS14665 -2.2 -3.0 UvrD-helicase domain-containing protein compare
ABID97_RS18495 -2.2 -1.2 DUF2889 domain-containing protein compare
ABID97_RS04825 -2.2 -6.8 hypothetical protein compare
ABID97_RS17850 -2.1 -0.9 tetratricopeptide repeat protein compare
ABID97_RS18335 -2.1 -1.3 hypothetical protein compare
ABID97_RS00255 -2.1 -9.3 type IV pilus twitching motility protein PilT compare
ABID97_RS02455 -2.1 -4.6 nucleotidyltransferase family protein compare
ABID97_RS13570 -2.1 -4.1 IclR family transcriptional regulator compare
ABID97_RS07500 -2.1 -2.4 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS14160 -2.1 -6.3 cell division protein ZapE compare
ABID97_RS08570 -2.1 -6.2 ferrous iron transporter B compare
ABID97_RS28600 -2.1 -0.9 aspartate aminotransferase family protein compare
ABID97_RS15490 -2.1 -5.4 FMNH2-dependent alkanesulfonate monooxygenase compare
ABID97_RS19930 -2.0 -1.3 DUF2160 domain-containing protein compare
ABID97_RS27795 -2.0 -0.9 TetR/AcrR family transcriptional regulator compare
ABID97_RS06420 -2.0 -7.7 ATP-binding protein compare
ABID97_RS06600 -1.9 -6.3 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS09830 -1.9 -1.1 hypothetical protein compare
ABID97_RS23440 -1.9 -8.6 A24 family peptidase compare
ABID97_RS06150 -1.9 -6.1 tyrosine recombinase XerC compare
ABID97_RS06275 -1.9 -1.5 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS00335 -1.9 -5.3 c-type cytochrome compare
ABID97_RS14200 -1.9 -4.5 pseudouridine synthase compare
ABID97_RS08375 -1.9 -6.4 DNA repair protein RecO compare
ABID97_RS17200 -1.9 -12.0 ribonuclease R compare
ABID97_RS27635 -1.9 -0.8 NAD(P)H-dependent oxidoreductase compare
ABID97_RS11750 -1.9 -1.4 trimeric intracellular cation channel family protein compare
ABID97_RS06335 -1.8 -13.5 metalloprotease TldD compare
ABID97_RS19375 -1.8 -4.5 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS06160 -1.8 -5.6 GTP-binding protein compare
ABID97_RS02120 -1.8 -7.4 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS13995 -1.8 -11.0 excinuclease ABC subunit UvrB compare
ABID97_RS12155 -1.8 -7.5 glycogen debranching protein GlgX compare
ABID97_RS12590 -1.8 -1.1 triphosphoribosyl-dephospho-CoA synthase compare
ABID97_RS17425 -1.8 -9.2 TonB-dependent receptor compare
ABID97_RS02115 -1.8 -8.1 PilW family protein compare
ABID97_RS07260 -1.8 -4.0 TIM44-like domain-containing protein compare
ABID97_RS03495 -1.8 -8.8 TetR family transcriptional regulator compare
ABID97_RS08765 -1.8 -2.8 CobD/CbiB family protein compare
ABID97_RS02420 -1.7 -5.9 protealysin inhibitor emfourin compare
ABID97_RS08790 -1.7 -6.4 oligoribonuclease compare
ABID97_RS06450 -1.7 -2.6 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS04710 -1.7 -5.9 malate synthase G compare
ABID97_RS06195 -1.7 -0.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABID97_RS09595 -1.7 -1.7 Arc family DNA-binding protein compare
ABID97_RS06605 -1.7 -5.8 LysR substrate-binding domain-containing protein compare
ABID97_RS14920 -1.7 -9.9 IclR family transcriptional regulator compare
ABID97_RS12440 -1.7 -7.4 CaiB/BaiF CoA-transferase family protein compare
ABID97_RS20695 -1.7 -7.7 metalloprotease PmbA compare
ABID97_RS08430 -1.7 -1.1 tryptophan synthase subunit beta compare
ABID97_RS20375 -1.7 -2.5 ABC transporter substrate-binding protein compare
ABID97_RS20980 -1.6 -1.0 transcriptional repressor compare
ABID97_RS16450 -1.6 -7.7 anti-sigma factor compare
ABID97_RS07015 -1.6 -7.5 OsmC family protein compare
ABID97_RS16900 -1.6 -5.9 exodeoxyribonuclease I compare
ABID97_RS01650 -1.6 -1.1 orotidine-5'-phosphate decarboxylase compare
ABID97_RS22940 -1.6 -2.9 single-stranded-DNA-specific exonuclease RecJ compare
ABID97_RS13865 -1.6 -3.4 hypothetical protein compare
ABID97_RS08775 -1.6 -1.6 ribosome small subunit-dependent GTPase A compare
ABID97_RS24800 -1.6 -9.0 peptidase M61 compare
ABID97_RS15100 -1.6 -2.0 helix-turn-helix transcriptional regulator compare
ABID97_RS05670 -1.6 -1.5 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS02855 -1.6 -6.2 sensor histidine kinase N-terminal domain-containing protein compare
ABID97_RS06355 -1.5 -8.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
ABID97_RS14055 -1.5 -2.2 DUF883 family protein compare
ABID97_RS28290 -1.5 -0.8 hypothetical protein compare
ABID97_RS25485 -1.5 -1.7 fumarylacetoacetate hydrolase family protein compare
ABID97_RS02135 -1.5 -3.0 GspH/FimT family pseudopilin compare
ABID97_RS08350 -1.5 -8.2 translation elongation factor 4 compare
ABID97_RS17595 -1.5 -6.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS05855 -1.5 -8.2 acyl-CoA dehydrogenase C-terminal domain-containing protein compare
ABID97_RS02110 -1.5 -9.1 type IV pilus modification protein PilV compare
ABID97_RS05215 -1.5 -1.1 hypothetical protein compare
ABID97_RS04610 -1.5 -5.0 potassium transporter Kup compare
ABID97_RS15495 -1.5 -2.6 aliphatic sulfonate ABC transporter permease SsuC compare
ABID97_RS07030 -1.5 -7.2 ABC transporter permease compare


Specific Phenotypes

For 38 genes in this experiment

For carbon source L-Histidine in Variovorax sp. OAS795

For carbon source L-Histidine across organisms