Experiment set1IT080 for Pseudomonas putida KT2440

Compare to:

Glucose carbon source (20mM)

200 most important genes:

  gene name fitness t score description  
PP_0422 -6.3 -4.4 Indole-3-glycerol phosphate synthase compare
PP_5289 -5.9 -4.1 Acetylglutamate kinase compare
PP_5185 -5.8 -4.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0293 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4890 -5.8 -4.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_1079 -5.8 -4.0 Ornithine carbamoyltransferase compare
PP_1995 -5.6 -5.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2168 -5.5 -7.5 Transaldolase compare
PP_0967 -5.5 -8.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1985 -5.5 -3.8 3-isopropylmalate dehydratase large subunit compare
PP_1988 -5.3 -6.3 3-isopropylmalate dehydrogenase compare
PP_0082 -5.3 -5.1 tryptophan synthase alpha chain compare
PP_0966 -5.2 -8.7 Histidinol dehydrogenase compare
PP_3511 -5.2 -7.1 Branched-chain-amino-acid aminotransferase compare
PP_1088 -5.2 -10.4 Argininosuccinate synthase compare
PP_4678 -5.1 -11.7 Ketol-acid reductoisomerase compare
PP_0290 -5.0 -8.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0760 -5.0 -4.8 conserved membrane protein of unknown function compare
PP_4999 -5.0 -3.4 dihydroorotase-like protein compare
PP_0417 -5.0 -14.7 Anthranilate synthase component 1 compare
PP_0420 -5.0 -9.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4799 -4.9 -3.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0184 -4.8 -9.2 Argininosuccinate lyase compare
PP_0289 -4.6 -8.3 Imidazoleglycerol-phosphate dehydratase compare
PP_0691 -4.6 -6.3 Glutamate 5-kinase compare
PP_4680 -4.6 -11.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5015 -4.6 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0083 -4.6 -6.2 tryptophan synthase beta chain compare
PP_2327 -4.5 -7.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4909 -4.5 -7.6 phosphoserine phosphatase compare
PP_0965 -4.5 -10.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4679 -4.5 -6.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1986 -4.4 -3.0 3-isopropylmalate dehydratase small subunit compare
PP_5014 -4.4 -4.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_4723 -4.4 -6.0 Carbamoyl-phosphate synthase large chain compare
PP_5347 -4.3 -10.0 pyruvate carboxylase subunit A compare
PP_5097 -4.2 -13.2 homoserine O-acetyltransferase compare
PP_5098 -4.2 -8.0 methionine biosynthesis protein MetW compare
PP_4724 -4.2 -2.9 Carbamoyl-phosphate synthase small chain compare
PP_5128 -3.8 -8.9 Dihydroxy-acid dehydratase compare
PP_2001 -3.8 -11.0 O-succinylhomoserine sulfhydrylase compare
PP_4696 -3.8 -9.0 Nitrogen regulation protein NR(I) compare
PP_4693 -3.7 -8.3 RNA polymerase-binding transcription factor DksA compare
PP_0292 -3.6 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3999 -3.5 -4.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2000 -3.4 -2.3 amidophosphoribosyl transferase compare
PP_0421 -3.4 -8.4 Anthranilate phosphoribosyltransferase compare
PP_5155 -3.4 -4.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1664 -3.4 -7.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_4700 -3.3 -5.4 pantothenate synthetase compare
PP_2371 -3.3 -6.2 Sulphite reductase hemoprotein, beta subunit compare
PP_5348 -3.3 -9.9 Transcriptional regulator, LysR family compare
PP_5346 -3.0 -9.9 pyruvate carboxylase subunit B compare
PP_1022 -3.0 -7.5 glucose 6-phosphate-1-dehydrogenase compare
PP_5303 -3.0 -6.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0339 -3.0 -2.0 Pyruvate dehydrogenase E1 component compare
PP_1025 -2.9 -9.6 2-isopropylmalate synthase compare
PP_5095 -2.9 -3.3 pyrroline-5-carboxylate reductase compare
PP_2370 -2.8 -3.3 conserved protein of unknown function compare
PP_1656 -2.7 -5.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_5216 -2.6 -3.0 exopolyphosphatase compare
PP_3790 -2.6 -10.3 diaminopimelate epimerase compare
PP_0164 -2.4 -8.6 conserved protein of unknown function compare
PP_5350 -2.3 -5.7 Transcriptional regulator, RpiR family compare
PP_0393 -2.2 -3.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4917 -2.1 -6.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1362 -2.1 -5.9 pyruvate kinase II compare
PP_0218 -2.1 -10.4 Sensory box protein compare
PP_2328 -2.0 -5.4 Phosphoadenosine phosphosulfate reductase compare
PP_0291 -1.9 -2.1 conserved protein of unknown function compare
PP_5227 -1.8 -8.9 diaminopimelate decarboxylase compare
PP_1912 -1.7 -5.4 Phosphate acyltransferase compare
PP_4120 -1.5 -4.5 NADH-quinone oxidoreductase subunit B compare
PP_0833 -1.5 -3.0 queuine tRNA-ribosyltransferase compare
PP_2378 -1.5 -3.3 Fe/S biogenesis protein NfuA compare
PP_3449 -1.4 -3.3 conserved exported protein of unknown function compare
PP_4804 -1.4 -4.4 RlpA-like lipoprotein compare
PP_0957 -1.4 -2.3 D-arabinose 5-phosphate isomerase compare
PP_3417 -1.4 -4.6 D-gluconate transporter compare
PP_4964 -1.4 -3.6 D-erythrose 4-phosphate dehydrogenase compare
PP_1629 -1.3 -6.3 Protein RecA compare
PP_5628 -1.3 -3.6 conserved protein of unknown function compare
PP_1237 -1.3 -2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0065 -1.3 -4.4 NAD-binding component of TrK potassium transporter compare
PP_4004 -1.3 -4.7 DNA translocase FtsK compare
PP_4122 -1.2 -2.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0261 -1.2 -5.0 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0377 -1.2 -1.7 coenzyme PQQ synthesis protein D compare
PP_3649 -1.2 -3.6 Transcriptional regulator, GntR family compare
PP_2302 -1.2 -5.1 DNA-binding, ATP-dependent protease compare
PP_1589 -1.2 -6.6 uridylyltransferase compare
PP_5309 -1.2 -5.6 oxidative and nitrosative stress transcriptional dual regulator compare
PP_1994 -1.1 -3.0 tRNA pseudouridine (38-40)synthase compare
PP_2510 -1.1 -2.0 conserved protein of unknown function compare
PP_4045 -1.1 -2.7 conserved protein of unknown function compare
PP_1217 -1.1 -4.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4126 -1.1 -2.0 NADH-quinone oxidoreductase subunit I compare
PP_1654 -1.1 -3.0 cysteine synthase B compare
PP_1493 -1.1 -2.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2341 -1.1 -2.1 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4895 -1.1 -3.5 tRNA dimethylallyltransferase compare
PP_1783 -1.1 -3.0 dTDP-glucose pyrophosphorylase compare
PP_2144 -1.0 -3.8 Transcriptional regulator, TetR family compare
PP_2345 -1.0 -1.9 conserved exported protein of unknown function compare
PP_4546 -1.0 -3.8 ATP-dependent helicase HrpA compare
PP_1304 -1.0 -5.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5609 -1.0 -2.5 conserved protein of unknown function compare
PP_0001 -1.0 -1.9 probable chromosome-partitioning protein compare
PP_0980 -0.9 -4.4 Probable cytosol aminopeptidase compare
PP_1062 -0.9 -2.3 MutT/nudix family protein compare
PP_4503 -0.9 -2.6 DNA-binding response regulator compare
PP_4238 -0.9 -2.4 conserved protein of unknown function compare
PP_3541 -0.9 -2.3 Transporter, MgtC family compare
PP_0653 -0.9 -1.5 conserved protein of unknown function compare
PP_3519 -0.9 -1.2 putative Lipoprotein compare
PP_1979 -0.9 -2.1 putative Hydrolase compare
PP_5604 -0.9 -1.1 putative subtilisin-like serine protease compare
PP_5748 -0.9 -1.5 cytochrome c heme lyase subunit compare
PP_2826 -0.9 -2.2 Transcriptional regulator MexT compare
PP_0575 -0.9 -3.7 conserved membrane protein of unknown function compare
PP_4695 -0.9 -5.3 Sensory box histidine kinase compare
PP_1553 -0.9 -1.3 conserved protein of unknown function compare
PP_5310 -0.9 -3.7 junction-specific ATP-dependent DNA helicase compare
PP_2137 -0.8 -1.8 beta-ketoadipyl CoA thiolase, beta component compare
PP_4988 -0.8 -4.4 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4555 -0.8 -2.2 conserved protein of unknown function compare
PP_2309 -0.8 -1.2 conserved protein of unknown function compare
PP_4308 -0.8 -2.9 Transcriptional regulator, AsnC family compare
PP_5035 -0.8 -4.4 Histidine utilization repressor compare
PP_0123 -0.8 -5.6 DNA polymerase I, 5 compare
PP_5000 -0.8 -1.7 peptidase component of the ATP-dependent HslVU protease compare
PP_5486 -0.8 -1.6 conserved protein of unknown function compare
PP_1128 -0.8 -1.8 OmpA family protein compare
PP_1770 -0.8 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1216 -0.8 -1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4131 -0.8 -3.9 NADH-quinone oxidoreductase subunit N compare
PP_0809 -0.8 -4.8 disulfide bond formation protein B compare
PP_5705 -0.8 -1.5 protein of unknown function compare
PP_1038 -0.8 -1.8 conserved protein of unknown function compare
PP_2373 -0.8 -2.1 conserved protein of unknown function compare
PP_0630 -0.8 -1.0 DNA gyrase inhibitor YacG compare
PP_0381 -0.8 -3.9 Coenzyme PQQ synthesis protein F compare
PP_0153 -0.8 -1.5 hypothetical protein compare
PP_1632 -0.8 -1.4 conserved protein of unknown function compare
PP_4129 -0.8 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0232 -0.8 -1.3 ATP-binding taurine transporter subunit compare
PP_2929 -0.8 -4.6 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_2575 -0.8 -1.3 conserved exported protein of unknown function compare
PP_4392 -0.7 -4.2 chemotaxis protein methyltransferase compare
PP_4532 -0.7 -1.7 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2152 -0.7 -2.1 glycerophosphoryl diester phosphodiesterase compare
PP_0250 -0.7 -1.8 heat shock protein Hsp15 involved in ribosome recycling compare
PP_4379 -0.7 -2.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2217 -0.7 -2.3 enoyl-CoA hydratase compare
PP_4058 -0.7 -4.5 1,4-alpha-glucan branching enzyme compare
PP_3294 -0.7 -2.4 Universal stress protein family compare
PP_3789 -0.7 -3.7 putative Efflux transporter compare
PP_3662 -0.7 -4.1 conserved protein of unknown function compare
PP_2324 -0.7 -3.1 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_3328 -0.7 -1.9 putative Ring-cleaving dioxygenase compare
PP_4227 -0.7 -1.5 conserved protein of unknown function compare
PP_0790 -0.7 -3.4 Inner membrane protein AmpE compare
PP_3036 -0.7 -2.7 conserved protein of unknown function compare
PP_2585 -0.7 -2.8 Alpha-ketoglutaric semialdehyde dehydrogenase compare
PP_1734 -0.7 -2.6 Probable septum site-determining protein MinC compare
PP_5176 -0.7 -2.1 conserved protein of unknown function compare
PP_3530 -0.7 -2.8 putative S-ureidoglycine aminohydrolase compare
PP_3443 -0.7 -4.3 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_0378 -0.7 -3.9 Pyrroloquinoline-quinone synthase compare
PP_4560 -0.7 -2.9 putative Ribonuclease BN compare
PP_4406 -0.7 -0.9 conserved protein of unknown function compare
PP_2044 -0.7 -1.3 conserved inner membrane protein of unknown function compare
PP_5274 -0.7 -1.1 conserved protein of unknown function compare
PP_4902 -0.7 -1.9 Oligoribonuclease compare
PP_0007 -0.7 -2.2 conserved hypothetical protein compare
PP_1300 -0.7 -1.9 putative amino acid ABC transporter - ATP-binding subunit compare
PP_1231 -0.7 -2.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3040 -0.7 -2.3 Pyocin R2_PP, holin compare
PP_2747 -0.7 -1.5 conserved protein of unknown function compare
PP_5390 -0.7 -1.8 conserved hypothetical protein compare
PP_5537 -0.7 -1.8 conserved membrane protein of unknown function compare
PP_1009 -0.7 -2.6 glyceraldehyde-3-phosphate dehydrogenase compare
PP_0003 -0.6 -2.5 16S RNA methyltransferase compare
PP_0406 -0.6 -2.3 Nucleotidyltransferase family protein compare
PP_5022 -0.6 -1.4 Glutamine transport ATP-binding protein GlnQ compare
PP_1546 -0.6 -2.1 conserved protein of unknown function compare
PP_4121 -0.6 -3.1 NADH-quinone oxidoreductase subunit C/D compare
PP_0914 -0.6 -4.2 GGDEF domain protein compare
PP_5621 -0.6 -1.6 protein of unknown function compare
PP_1011 -0.6 -3.4 glucokinase compare
PP_5489 -0.6 -2.3 conserved protein of unknown function compare
PP_3647 -0.6 -1.7 putative Oxidoreductase compare
PP_1176 -0.6 -1.1 conserved protein of unknown function compare
PP_1293 -0.6 -1.3 molybdopterin synthase small subunit compare
PP_5359 -0.6 -2.0 CobW/P47K family protein compare
PP_4109 -0.6 -1.8 conserved protein of unknown function compare
PP_2820 -0.6 -1.4 HTH-type transcriptional regulator nfxB compare
PP_3930 -0.6 -1.5 conserved exported protein of unknown function compare
PP_0888 -0.6 -1.6 Photosynthetic apparatus regulatory protein RegA compare
PP_4166 -0.6 -2.2 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms