Experiment set1IT080 for Pseudomonas putida KT2440

Compare to:

Glucose carbon source (20mM)

200 most detrimental genes:

  gene name fitness t score description  
PP_0948 +2.5 4.1 Phosphocarrier protein HPr compare
PP_5145 +1.6 13.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_5093 +1.2 2.4 twitching motility protein compare
PP_t10 +1.2 1.9 tRNA-Pro compare
PP_5456 +1.1 2.2 conserved protein of unknown function compare
PP_2999 +1.1 1.9 Glyoxalase family protein compare
PP_2725 +1.1 2.9 Protease PfpI compare
PP_0566 +1.1 1.7 translation-related factor compare
PP_1650 +1.0 9.2 Sensor protein GacS compare
PP_4099 +1.0 9.1 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0254 +1.0 2.4 conserved protein of unknown function compare
PP_t49 +1.0 3.6 tRNA-Met compare
PP_3064 +0.9 1.5 Phage tail protein compare
PP_4171 +0.9 7.7 conserved exported protein of unknown function compare
PP_2387 +0.9 1.2 conserved protein of unknown function compare
PP_3037 +0.9 1.3 C4-type zinc finger protein, DksA/TraR family compare
PP_2737 +0.8 1.8 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5674 +0.8 1.9 conserved protein of unknown function compare
PP_3637 +0.8 1.6 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0048 +0.8 1.6 conserved protein of unknown function compare
PP_1683 +0.8 2.3 Transcriptional regulator, MarR family compare
PP_0398 +0.8 2.5 Thiosulfate sulfurtransferase GlpE compare
PP_1812 +0.8 2.1 conserved protein of unknown function compare
PP_2889 +0.8 2.9 putative Transmembrane regulator PrtR compare
PP_2306 +0.8 2.1 conserved exported protein of unknown function compare
PP_5017 +0.8 1.3 Sec-independent protein translocase protein TatB compare
PP_4178 +0.7 2.7 Dienelactone hydrolase family protein compare
PP_4519 +0.7 6.0 Agglutination protein compare
PP_1142 +0.7 1.3 conserved protein of unknown function compare
PP_5008 +0.7 1.4 Poly granule-associated protein compare
PP_5445 +0.7 1.4 conserved protein of unknown function compare
PP_3505 +0.7 1.9 conserved protein of unknown function compare
PP_3876 +0.7 2.1 conserved protein of unknown function compare
PP_1113 +0.7 4.5 Pyridoxal-phosphate dependent enzyme family protein compare
PP_1568 +0.7 1.0 conserved protein of unknown function compare
PP_0593 +0.7 1.1 putative ribosome-binding factor compare
PP_1445 +0.7 4.0 carbohydrate-selective porin compare
PP_0166 +0.7 5.5 HlyD family secretion protein compare
PP_1122 +0.6 1.6 OmpA family protein compare
PP_5232 +0.6 2.0 conserved protein of unknown function compare
PP_0168 +0.6 5.9 putative surface adhesion protein compare
PP_4373 +0.6 4.4 Transcriptional regulator FleQ compare
PP_4217 +0.6 5.6 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0583 +0.6 2.4 Transcriptional regulator, AraC family compare
PP_1655 +0.6 1.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5525 +0.6 1.7 conserved exported protein of unknown function compare
PP_0900 +0.6 2.2 PAP2 family protein compare
PP_1317 +0.6 3.1 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_2883 +0.6 1.1 conserved protein of unknown function compare
PP_1054 +0.6 1.5 Type II secretion pathway protein XcpZ compare
PP_2819 +0.6 2.8 Outer membrane protein OprJ compare
PP_0827 +0.6 2.1 putative phosphonate transport system permease protein PtxC compare
PP_5202 +0.6 1.6 putative cell division protein compare
PP_0306 +0.6 1.9 conserved protein of unknown function compare
PP_3365 +0.6 1.2 Acetolactate synthase compare
PP_3460 +0.6 1.4 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_5429 +0.6 2.8 protein of unknown function compare
PP_4597 +0.6 2.4 Cyclic pyranopterin monophosphate synthase compare
PP_4905 +0.6 2.9 Flagellar motor rotation protein compare
PP_1096 +0.6 1.6 putative electron transport complex protein compare
PP_4449 +0.6 2.1 conserved protein of unknown function compare
PP_5689 +0.6 2.4 conserved protein of unknown function compare
PP_5495 +0.5 1.4 protein of unknown function compare
PP_0167 +0.5 4.9 Toxin secretion ATP-binding protein compare
PP_2060 +0.5 1.5 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_1855 +0.5 1.7 conserved exported protein of unknown function compare
PP_4372 +0.5 2.9 Sensory box histidine kinase FleS compare
PP_4942 +0.5 1.8 conserved protein of unknown function compare
PP_2269 +0.5 2.2 putative N-acetylmuramoyl-L-alanine amidase compare
PP_0165 +0.5 4.1 GGDEF domain protein compare
PP_1068 +0.5 2.1 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_2046 +0.5 1.7 Transcriptional regulator, LysR family compare
PP_3864 +0.5 2.0 putative Phage FluMu DNA circulation protein compare
PP_5706 +0.5 1.9 Sec translocation complex - SecG subunit compare
PP_0276 +0.5 0.9 Transcriptional regulator, Cro/CI family compare
PP_1571 +0.5 1.8 conserved protein of unknown function compare
PP_2281 +0.5 2.2 putative Capsid assembly protein compare
PP_1178 +0.5 1.8 conserved protein of unknown function compare
PP_2882 +0.5 1.6 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_5549 +0.5 2.2 conserved protein of unknown function compare
PP_1845 +0.5 1.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_2960 +0.5 1.3 transcriptional regulator, AraC family compare
PP_1074 +0.5 1.8 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_4199 +0.5 0.9 putative Lipoprotein compare
PP_3831 +0.5 2.5 conserved protein of unknown function compare
PP_1454 +0.5 1.2 conserved protein of unknown function compare
PP_5110 +0.5 1.5 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_0240 +0.5 1.0 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_2923 +0.5 1.9 conserved protein of unknown function compare
PP_3702 +0.5 2.5 conserved protein of unknown function compare
PP_4332 +0.5 1.8 Chemotaxis protein CheW compare
PP_1381 +0.5 0.8 4-carboxymuconolactone decarboxylase compare
PP_1903 +0.5 1.6 putative phosphotyrosine-protein phosphatase compare
PP_2247 +0.5 1.5 putative Endoribonuclease compare
PP_2681 +0.5 1.0 coenzyme PQQ synthesis protein D compare
PP_1713 +0.5 1.2 Transcriptional regulator PcaQ compare
PP_2740 +0.5 1.1 Transcriptional regulator, MerR family compare
PP_2050 +0.5 2.3 conserved protein of unknown function compare
PP_5053 +0.5 3.1 Protein-export protein SecB compare
PP_1197 +0.5 3.1 ribosomal protein S12 methylthiotransferase compare
PP_4036 +0.5 2.5 D-hydantoinase/dihydropyrimidinase compare
PP_4418 +0.5 2.2 conserved protein of unknown function compare
PP_2439 +0.5 2.2 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_4789 +0.5 2.3 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_1455 +0.5 1.7 conserved protein of unknown function compare
PP_2414 +0.4 0.8 conserved exported protein of unknown function compare
PP_3014 +0.4 1.5 conserved exported protein of unknown function compare
PP_3239 +0.4 1.4 putative cointegrate resolution protein T Tn4652 compare
PP_5106 +0.4 1.5 conserved inner membrane protein compare
PP_2055 +0.4 1.5 putative isomerase compare
PP_2422 +0.4 2.1 conserved protein of unknown function compare
PP_0871 +0.4 2.2 putative Glycine betaine/carnitine/choline ABC transporter, permease protein compare
PP_0642 +0.4 1.7 conserved membrane protein of unknown function compare
PP_1729 +0.4 0.9 conserved protein of unknown function compare
PP_0351 +0.4 2.3 putative Transmembrane sensor protein compare
PP_2299 +0.4 2.0 Trigger factor compare
PP_5191 +0.4 1.3 conserved exported protein of unknown function compare
PP_3243 +0.4 1.1 Acetyltransferase, GNAT family compare
PP_5533 +0.4 0.8 conserved protein of unknown function compare
PP_0821 +0.4 1.7 conserved exported protein of unknown function compare
PP_3156 +0.4 1.6 Universal stress protein family compare
PP_4787 +0.4 1.1 putative protein with nucleoside triphosphate hydrolase domain compare
PP_3531 +0.4 1.9 conserved exported protein of unknown function compare
PP_4994 +0.4 2.2 conserved protein of unknown function compare
PP_1076 +0.4 2.8 aquaglyceroporin compare
PP_3415 +0.4 2.2 Transcriptional regulator, LacI family compare
PP_2442 +0.4 0.9 conserved protein of unknown function, DUF480 family compare
PP_0685 +0.4 1.1 conserved protein of unknown function compare
PP_2860 +0.4 2.0 putative Nicotinamide mononucleotide transporter compare
PP_1898 +0.4 1.3 MotA/TolQ/ExbB proton channel family protein compare
PP_5712 +0.4 1.8 conserved protein of unknown function compare
PP_0355 +0.4 1.7 Response regulator compare
PP_2894 +0.4 1.7 conserved protein of unknown function compare
PP_5174 +0.4 2.1 Efflux membrane fusion protein, RND family compare
PP_3424 +0.4 2.0 Type II secretion pathway protein XcpS compare
PP_3705 +0.4 1.5 conserved membrane protein of unknown function compare
PP_4534 +0.4 1.2 conserved protein of unknown function compare
PP_2413 +0.4 3.1 GGDEF family protein compare
PP_5423 +0.4 0.9 conserved membrane protein of unknown function compare
PP_2815 +0.4 1.9 conserved protein of unknown function compare
PP_5658 +0.4 1.3 protein of unknown function compare
PP_3861 +0.4 1.3 Phage FluMu protein gp46 compare
PP_2640 +0.4 1.2 Acetyltransferase, GNAT family compare
PP_3438 +0.4 2.1 conserved membrane protein of unknown function compare
PP_2207 +0.4 1.2 conserved membrane protein of unknown function compare
PP_2646 +0.4 0.7 conserved protein of unknown function compare
PP_0989 +0.4 1.2 glycine cleavage system H protein 1 compare
PP_2691 +0.4 1.8 conserved protein of unknown function compare
PP_1709 +0.4 1.3 Fumarylacetoacetate hydrolase family protein compare
PP_5038 +0.4 1.5 conserved lipoprotein of unknown function compare
PP_4230 +0.4 2.1 conserved exported protein of unknown function compare
PP_1922 +0.4 1.3 conserved protein of unknown function compare
PP_4619 +0.4 2.1 Maleylacetoacetate isomerase compare
PP_0782 +0.4 1.7 conserved protein of unknown function compare
PP_4213 +0.4 0.9 putative dipeptidase compare
PP_1542 +0.4 2.2 conserved protein of unknown function compare
PP_4413 +0.4 2.2 conserved protein of unknown function compare
PP_3693 +0.4 1.1 putative Transcriptional regulator MvaT, P16 subunit compare
PP_3888 +0.4 1.7 conserved protein of unknown function compare
PP_1041 +0.4 1.0 twin arginine protein export complex subunit compare
PP_3749 +0.4 1.7 conserved protein of unknown function compare
PP_2749 +0.4 1.5 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_0874 +0.4 1.0 conserved protein of unknown function compare
PP_0294 +0.4 1.3 Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) compare
PP_5437 +0.4 1.5 protein of unknown function compare
PP_1503 +0.4 1.2 conserved protein of unknown function compare
PP_3258 +0.4 0.9 conserved protein of unknown function compare
PP_1562 +0.4 1.0 putative Phage terminase, small subunit compare
PP_2274 +0.4 1.1 conserved protein of unknown function compare
PP_4828 +0.4 0.7 Precorrin-8X methylmutase compare
PP_3346 +0.4 0.8 Nickel transporter ATP-binding protein compare
PP_5505 +0.4 1.0 conserved transmembrane protein of unknown function compare
PP_5575 +0.4 0.8 conserved protein of unknown function compare
PP_5500 +0.4 0.8 protein of unknown function compare
PP_1384 +0.4 2.1 Probable efflux pump outer membrane protein TtgC compare
PP_4013 +0.4 1.1 MutT/nudix family protein compare
PP_3185 +0.4 1.3 Pet18 protein compare
PP_2191 +0.4 1.7 putative Lipoprotein compare
PP_1193 +0.4 1.6 conserved membrane protein of unknown function compare
PP_0352 +0.3 1.3 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_5522 +0.3 1.4 protein of unknown function compare
PP_4566 +0.3 1.9 putative drug/metabolite transporter compare
PP_4383 +0.3 1.5 Flagellar P-ring protein compare
PP_5322 +0.3 2.0 putative metal ion transporter compare
PP_2615 +0.3 0.9 hemolysin-coregulated protein compare
PP_5337 +0.3 1.9 LysR family transcriptional regulator compare
PP_2919 +0.3 1.7 Transcriptional regulator, LysR family compare
PP_2842 +0.3 1.2 urease accessory protein compare
PP_5211 +0.3 1.6 ChaC-related protein compare
PP_5624 +0.3 1.8 conserved protein of unknown function compare
PP_3509 +0.3 1.3 Glyoxalase family protein compare
PP_3152 +0.3 2.0 putative DNA-binding transcriptional regulator, LysR-type compare
PP_2444 +0.3 1.9 Transcriptional regulator, LysR family compare
PP_0963 +0.3 0.9 putative BolA family protein compare
PP_4256 +0.3 1.6 cytochrome c oxidase subunit, cbb3-type compare
PP_5735 +0.3 1.1 conserved hypothetical protein compare
PP_4497 +0.3 1.9 conserved protein of unknown function compare
PP_4660 +0.3 1.3 Transcriptional regulator, LysR family compare
PP_1844 +0.3 1.3 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_3089 +0.3 1.1 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms