Experiment set1IT080 for Enterobacter asburiae PDN3

Compare to:

M9 with sucrose; no stress control

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_4153 -5.5 -3.8 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_0535 -5.1 -10.0 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_2252 -5.0 -2.9 TolA protein compare
EX28DRAFT_2651 -4.7 -7.3 glutamate 5-kinase compare
EX28DRAFT_2916 -4.7 -12.9 diaminopimelate decarboxylase compare
EX28DRAFT_2650 -4.7 -12.9 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_3668 -4.6 -12.0 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_3046 -4.6 -12.7 cystathionine beta-lyase, bacterial compare
EX28DRAFT_0932 -4.6 -6.9 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_4421 -4.6 -1.5 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_0537 -4.5 -12.2 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_2701 -4.5 -16.5 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_4422 -4.4 -8.6 argininosuccinate lyase compare
EX28DRAFT_2027 -4.4 -7.7 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_4331 -4.3 -10.2 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_4493 -4.2 -7.5 Transcriptional regulator compare
EX28DRAFT_2272 -4.2 -12.8 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_3669 -4.1 -8.4 3-isopropylmalate dehydrogenase compare
EX28DRAFT_0538 -4.1 -13.1 histidinol-phosphate aminotransferase compare
EX28DRAFT_2265 -4.0 -3.2 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_4420 -4.0 -1.9 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_0933 -4.0 -18.2 tryptophan synthase, beta subunit compare
EX28DRAFT_0534 -3.9 -12.0 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_4446 -3.9 -9.3 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_0934 -3.8 -14.2 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_4443 -3.8 -13.6 dihydroxy-acid dehydratase compare
EX28DRAFT_0533 -3.7 -7.9 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_0540 -3.7 -10.7 ATP phosphoribosyltransferase compare
EX28DRAFT_0539 -3.7 -7.2 histidinol dehydrogenase compare
EX28DRAFT_4418 -3.7 -11.6 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_2893 -3.7 -12.3 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_4444 -3.6 -8.6 threonine ammonia-lyase, biosynthetic, long form compare
EX28DRAFT_3614 -3.6 -11.7 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_2851 -3.6 -7.0 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_4544 -3.6 -2.6 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_2846 -3.5 -10.3 adenylyl-sulfate kinase compare
EX28DRAFT_0536 -3.5 -5.1 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_3616 -3.5 -4.1 threonine synthase compare
EX28DRAFT_3224 -3.4 -7.4 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_0935 -3.4 -9.1 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_0092 -3.4 -2.2 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_2548 -3.3 -6.0 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_4411 -3.3 -10.2 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_3670 -3.2 -8.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_2917 -3.2 -5.3 Transcriptional regulator compare
EX28DRAFT_2699 -3.2 -9.5 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_2853 -3.2 -10.5 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_3646 -3.1 -5.5 4-hydroxythreonine-4-phosphate dehydrogenase compare
EX28DRAFT_2585 -3.1 -3.7 pyrroline-5-carboxylate reductase compare
EX28DRAFT_2852 -3.0 -10.3 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_4478 -3.0 -6.5 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_2531 -2.9 -4.6 endopeptidase La compare
EX28DRAFT_0284 -2.9 -11.9 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_0936 -2.8 -10.1 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_3667 -2.8 -2.8 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_0214 -2.8 -7.4 cysteine synthase A compare
EX28DRAFT_4445 -2.7 -7.4 Transcriptional regulator compare
EX28DRAFT_3647 -2.6 -6.4 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_3710 -2.6 -6.1 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_3671 -2.6 -4.9 RNA compare
EX28DRAFT_0046 -2.6 -2.8 shikimate dehydrogenase compare
EX28DRAFT_0292 -2.5 -4.2 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_3461 -2.5 -5.3 ornithine carbamoyltransferase compare
EX28DRAFT_0922 -2.5 -3.4 TonB family C-terminal domain compare
EX28DRAFT_0038 -2.4 -2.2 K+ transport systems, NAD-binding component compare
EX28DRAFT_2848 -2.4 -10.1 sulfate adenylyltransferase, small subunit compare
EX28DRAFT_3613 -2.2 -4.7 RNA compare
EX28DRAFT_4442 -2.2 -4.5 branched-chain amino acid aminotransferase, group I compare
EX28DRAFT_0494 -2.1 -1.8 Protein-tyrosine-phosphatase compare
EX28DRAFT_0972 -2.1 -2.1 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_0111 -2.1 -2.9 FeS cluster assembly scaffold IscU compare
EX28DRAFT_1123 -2.1 -8.7 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_3314 -2.1 -1.1 Factor for inversion stimulation Fis, transcriptional activator compare
EX28DRAFT_3401 -2.1 -2.2 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_2958 -2.1 -1.5 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_0469 -2.0 -3.1 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
EX28DRAFT_2847 -2.0 -10.1 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_1941 -2.0 -2.2 Protein of unknown function (DUF4089) compare
EX28DRAFT_2245 -1.9 -7.3 quinolinate synthetase (EC 2.5.1.72) compare
EX28DRAFT_0132 -1.9 -4.0 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_4170 -1.9 -7.3 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_2043 -1.9 -8.4 transcriptional regulator, AsnC family compare
EX28DRAFT_2702 -1.8 -4.5 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_4419 -1.8 -2.5 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_3711 -1.8 -1.7 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_0620 -1.8 -1.7 Flagellar protein FliT compare
EX28DRAFT_1124 -1.8 -8.6 sucrose-6-phosphate hydrolase compare
EX28DRAFT_2270 -1.7 -1.2 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_4386 -1.7 -2.8 Signal transduction histidine kinase compare
EX28DRAFT_4350 -1.6 -1.3 nitrogen regulation protein NR(I) compare
EX28DRAFT_1121 -1.6 -3.4 Sugar kinases, ribokinase family compare
EX28DRAFT_2240 -1.6 -1.3 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_4156 -1.6 -1.2 ribulose-phosphate 3-epimerase compare
EX28DRAFT_0948 -1.6 -1.5 hypothetical protein compare
EX28DRAFT_1530 -1.5 -1.9 hypothetical protein compare
EX28DRAFT_0167 -1.5 -2.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_0065 -1.5 -1.5 thioredoxin compare
EX28DRAFT_4341 -1.5 -4.0 Protein-disulfide isomerase compare
EX28DRAFT_3675 -1.4 -7.7 transcriptional regulator, LacI family compare
EX28DRAFT_3089 -1.4 -1.1 Transcriptional regulators compare
EX28DRAFT_1122 -1.4 -5.4 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_0861 -1.4 -4.5 Response regulator receiver domain compare
EX28DRAFT_1740 -1.4 -1.1 Phosphotransferase system cellobiose-specific component IIA compare
EX28DRAFT_3643 -1.4 -3.9 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_0071 -1.4 -8.0 L-aspartate oxidase (EC 1.4.3.16) compare
EX28DRAFT_0190 -1.4 -1.4 transcriptional regulator, Spx/MgsR family compare
EX28DRAFT_2849 -1.4 -5.0 uroporphyrin-III C-methyltransferase compare
EX28DRAFT_3375 -1.4 -1.1 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_0531 -1.4 -5.8 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_1986 -1.4 -1.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_3879 -1.3 -4.6 Glycosyltransferase compare
EX28DRAFT_3276 -1.3 -4.9 glutamate synthase small subunit family protein, proteobacterial compare
EX28DRAFT_3702 -1.3 -3.1 nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19) compare
EX28DRAFT_0706 -1.2 -2.7 Entner-Doudoroff aldolase compare
EX28DRAFT_1527 -1.2 -3.3 hypothetical protein compare
EX28DRAFT_1742 -1.2 -3.1 PTS system, lactose/cellobiose family IIB component compare
EX28DRAFT_0769 -1.2 -1.3 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_3275 -1.2 -8.6 Glutamate synthase domain 2 compare
EX28DRAFT_2008 -1.2 -4.0 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_2546 -1.2 -5.8 2-dehydropantoate 2-reductase compare
EX28DRAFT_1300 -1.2 -1.6 hypothetical protein compare
EX28DRAFT_0228 -1.2 -1.5 tRNA compare
EX28DRAFT_1719 -1.2 -1.0 integration host factor, alpha subunit compare
EX28DRAFT_1692 -1.2 -1.1 Biofilm development protein YmgB/AriR compare
EX28DRAFT_3883 -1.1 -2.2 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_0331 -1.1 -3.1 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_0399 -1.1 -2.8 Transcriptional regulator compare
EX28DRAFT_1050 -1.1 -1.2 luciferase family oxidoreductase, group 1 compare
EX28DRAFT_4440 -1.1 -3.8 acetolactate synthase, large subunit (EC 2.2.1.6) compare
EX28DRAFT_4271 -1.1 -0.9 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_3045 -1.1 -2.6 tonB-system energizer ExbB compare
EX28DRAFT_4191 -1.1 -2.4 small GTP-binding protein domain compare
EX28DRAFT_0726 -1.1 -1.8 C-terminal peptidase (prc) compare
EX28DRAFT_2075 -1.0 -2.1 type II secretion system protein H compare
EX28DRAFT_1414 -1.0 -1.2 phenylacetate degradation probable enoyl-CoA hydratase paaB compare
EX28DRAFT_2271 -1.0 -2.2 hypothetical protein compare
EX28DRAFT_0593 -1.0 -7.1 DNA-methyltransferase (dcm) compare
EX28DRAFT_0116 -1.0 -1.9 FeS assembly protein IscX compare
EX28DRAFT_4413 -1.0 -6.1 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
EX28DRAFT_4092 -1.0 -1.7 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase compare
EX28DRAFT_2845 -1.0 -1.2 Protein of unknown function (DUF3561) compare
EX28DRAFT_2945 -1.0 -1.4 tyrosine recombinase XerD compare
EX28DRAFT_2641 -0.9 -2.1 Ash protein family compare
EX28DRAFT_1000 -0.9 -2.3 intracellular protease, PfpI family compare
EX28DRAFT_2225 -0.9 -4.8 3-carboxymuconate cyclase compare
EX28DRAFT_2974 -0.9 -4.9 transketolase, bacterial and yeast compare
EX28DRAFT_0970 -0.9 -1.4 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_3058 -0.9 -2.2 Signal transduction histidine kinase compare
EX28DRAFT_2375 -0.9 -1.9 ABC-type Fe2+-enterobactin transport system, periplasmic component compare
EX28DRAFT_2492 -0.9 -1.6 Protein of unknown function (DUF2496) compare
EX28DRAFT_0594 -0.9 -0.9 T/G mismatch-specific endonuclease (EC 3.1.-.-) compare
EX28DRAFT_4183 -0.9 -2.5 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
EX28DRAFT_2250 -0.9 -1.8 peptidoglycan-associated lipoprotein compare
EX28DRAFT_0434 -0.8 -1.0 hypothetical protein compare
EX28DRAFT_0272 -0.8 -1.2 phosphohistidine phosphatase, SixA compare
EX28DRAFT_4152 -0.8 -0.9 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_3297 -0.8 -2.5 ribonuclease, Rne/Rng family compare
EX28DRAFT_1772 -0.8 -1.5 methionine-R-sulfoxide reductase compare
EX28DRAFT_3729 -0.8 -3.6 pantoate--beta-alanine ligase compare
EX28DRAFT_2938 -0.8 -1.4 tRNA compare
EX28DRAFT_4479 -0.8 -1.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1478 -0.8 -1.2 Pili and flagellar-assembly chaperone, PapD N-terminal domain compare
EX28DRAFT_2532 -0.8 -1.8 RNA compare
EX28DRAFT_0478 -0.8 -2.4 Collagenase and related proteases compare
EX28DRAFT_1471 -0.8 -1.7 Predicted transcriptional regulator compare
EX28DRAFT_0374 -0.8 -1.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4534 -0.8 -2.4 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
EX28DRAFT_3777 -0.8 -1.6 transcriptional antiterminator, Rof compare
EX28DRAFT_2864 -0.8 -3.2 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_1009 -0.8 -0.8 hypothetical protein compare
EX28DRAFT_0081 -0.8 -2.8 DNA replication and repair protein RecO compare
EX28DRAFT_0125 -0.8 -0.6 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_2796 -0.7 -4.0 transcriptional regulator, DeoR family compare
EX28DRAFT_4459 -0.7 -4.3 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_0738 -0.7 -1.6 Predicted membrane protein compare
EX28DRAFT_1895 -0.7 -2.6 Histidinol phosphatase and related hydrolases of the PHP family compare
EX28DRAFT_1278 -0.7 -2.2 hypothetical protein compare
EX28DRAFT_4003 -0.7 -1.3 phosphate ABC transporter, permease protein PstC compare
EX28DRAFT_0926 -0.7 -0.9 Predicted Fe-S-cluster oxidoreductase compare
EX28DRAFT_0323 -0.7 -3.3 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_3566 -0.7 -1.7 Uncharacterized conserved protein compare
EX28DRAFT_2348 -0.7 -0.7 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_2255 -0.7 -1.8 tol-pal system-associated acyl-CoA thioesterase compare
EX28DRAFT_2371 -0.7 -1.4 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
EX28DRAFT_1497 -0.7 -0.9 hypothetical protein compare
EX28DRAFT_0305 -0.7 -3.4 Isopentenyldiphosphate isomerase compare
EX28DRAFT_4405 -0.7 -0.5 ATP-dependent protease HslVU, peptidase subunit compare
EX28DRAFT_0058 -0.7 -2.4 23S compare
EX28DRAFT_3708 -0.7 -0.9 Transcriptional regulators compare
EX28DRAFT_1761 -0.7 -3.5 NUDIX domain compare
EX28DRAFT_0545 -0.7 -1.2 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_2907 -0.7 -1.5 Bacterial protein of unknown function (DUF903) compare
EX28DRAFT_2472 -0.7 -0.5 Membrane protein implicated in regulation of membrane protease activity compare
EX28DRAFT_4531 -0.7 -4.0 thiazole biosynthesis protein ThiH compare
EX28DRAFT_3645 -0.7 -1.1 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_1295 -0.7 -0.8 Protein of unknown function (DUF2570) compare
EX28DRAFT_0205 -0.7 -4.2 sulfate/thiosulfate-binding protein compare
EX28DRAFT_2378 -0.7 -0.7 ABC-type enterobactin transport system, permease component compare
EX28DRAFT_3259 -0.7 -4.0 Predicted P-loop-containing kinase compare
EX28DRAFT_4383 -0.7 -3.4 transcriptional regulator, XRE family with cupin sensor compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in no stress control experiments

For no stress control Sucrose across organisms