Experiment set1IT079 for Rhizobium sp. OAE497

Compare to:

Carnitine Hydrochloride carbon source

200 most important genes:

  gene name fitness t score description  
ABIE40_RS19355 -6.9 -4.7 thioredoxin compare
ABIE40_RS19040 -6.2 -4.3 3-isopropylmalate dehydratase small subunit compare
ABIE40_RS18380 -6.2 -12.5 3-isopropylmalate dehydratase large subunit compare
ABIE40_RS17525 -6.1 -3.2 lipoprotein compare
ABIE40_RS18590 -6.0 -13.5 homoserine O-succinyltransferase compare
ABIE40_RS02340 -6.0 -10.8 O-succinylhomoserine sulfhydrylase compare
ABIE40_RS19415 -5.8 -15.5 phosphoenolpyruvate carboxykinase compare
ABIE40_RS09095 -5.8 -4.0 PAS domain-containing sensor histidine kinase compare
ABIE40_RS19050 -5.8 -10.4 3-isopropylmalate dehydrogenase compare
ABIE40_RS13330 -5.7 -11.7 2-isopropylmalate synthase compare
ABIE40_RS06555 -5.7 -3.0 phosphoribosylglycinamide formyltransferase compare
ABIE40_RS09545 -5.5 -3.3 anthranilate phosphoribosyltransferase compare
ABIE40_RS11950 -5.5 -8.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE40_RS17530 -5.4 -3.7 diaminopimelate decarboxylase compare
ABIE40_RS16320 -5.3 -3.7 histidinol-phosphatase compare
ABIE40_RS09660 -5.3 -14.0 AI-2E family transporter compare
ABIE40_RS18920 -5.2 -6.4 glutamate 5-kinase compare
ABIE40_RS03665 -5.2 -3.6 ATP phosphoribosyltransferase compare
ABIE40_RS10725 -5.1 -3.5 adenosylcobinamide-GDP ribazoletransferase compare
ABIE40_RS01970 -5.1 -3.5 acetylglutamate kinase compare
ABIE40_RS03660 -5.1 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
ABIE40_RS02325 -5.1 -3.5 ornithine carbamoyltransferase compare
ABIE40_RS20460 -5.1 -3.5 precorrin-3B synthase compare
ABIE40_RS19435 -5.1 -2.7 phosphoribosyl-ATP diphosphatase compare
ABIE40_RS11150 -4.9 -6.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABIE40_RS10720 -4.9 -3.0 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE40_RS02725 -4.9 -6.7 histidinol dehydrogenase compare
ABIE40_RS19460 -4.9 -3.4 imidazoleglycerol-phosphate dehydratase HisB compare
ABIE40_RS11105 -4.8 -3.3 cobyrinate a,c-diamide synthase compare
ABIE40_RS06930 -4.8 -3.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE40_RS00245 -4.8 -8.6 prephenate dehydratase compare
ABIE40_RS19330 -4.7 -3.2 phosphoribosylanthranilate isomerase compare
ABIE40_RS09150 -4.7 -18.1 nitrite/sulfite reductase compare
ABIE40_RS13410 -4.7 -3.2 anthranilate synthase compare
ABIE40_RS16070 -4.5 -3.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE40_RS20440 -4.5 -3.1 cobalt-precorrin-6A reductase compare
ABIE40_RS17565 -4.5 -2.9 ABC transporter permease compare
ABIE40_RS20435 -4.4 -3.0 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
ABIE40_RS10180 -4.4 -4.3 phosphoribosylformylglycinamidine synthase subunit PurL compare
ABIE40_RS01930 -4.4 -2.3 succinyl-diaminopimelate desuccinylase compare
ABIE40_RS17595 -4.4 -3.0 histidinol-phosphate transaminase compare
ABIE40_RS14980 -4.3 -3.0 glycoside hydrolase family 16 protein compare
ABIE40_RS09360 -4.3 -4.2 excinuclease ABC subunit UvrA compare
ABIE40_RS06270 -4.2 -8.1 amidophosphoribosyltransferase compare
ABIE40_RS17650 -4.2 -4.9 cobaltochelatase subunit CobS compare
ABIE40_RS19130 -4.1 -2.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE40_RS20455 -4.1 -2.1 precorrin-8X methylmutase compare
ABIE40_RS20430 -4.1 -2.8 precorrin-4 C(11)-methyltransferase compare
ABIE40_RS04215 -4.0 -4.0 sensor domain-containing phosphodiesterase compare
ABIE40_RS06730 -4.0 -5.9 riboflavin synthase compare
ABIE40_RS18925 -4.0 -7.1 glutamate-5-semialdehyde dehydrogenase compare
ABIE40_RS08005 -4.0 -2.7 dihydroxy-acid dehydratase compare
ABIE40_RS14985 -4.0 -2.4 glycosyltransferase compare
ABIE40_RS14955 -4.0 -12.4 sugar transferase compare
ABIE40_RS03405 -3.9 -2.7 anti-sigma factor compare
ABIE40_RS14990 -3.9 -12.4 glycosyltransferase family 2 protein compare
ABIE40_RS12135 -3.9 -2.7 methionine synthase compare
ABIE40_RS16645 -3.9 -15.4 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS19440 -3.8 -6.8 imidazole glycerol phosphate synthase subunit HisF compare
ABIE40_RS11495 -3.8 -7.7 acetolactate synthase 3 large subunit compare
ABIE40_RS06560 -3.8 -6.2 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE40_RS19480 -3.7 -2.5 DUF1402 family protein compare
ABIE40_RS19450 -3.7 -5.6 imidazole glycerol phosphate synthase subunit HisH compare
ABIE40_RS02320 -3.7 -6.1 aspartate aminotransferase family protein compare
ABIE40_RS11175 -3.7 -7.7 cobyric acid synthase compare
ABIE40_RS09540 -3.6 -7.9 peptidylprolyl isomerase compare
ABIE40_RS17645 -3.6 -3.5 cobaltochelatase subunit CobT compare
ABIE40_RS05430 -3.6 -2.5 phosphoribosylamine--glycine ligase compare
ABIE40_RS09725 -3.6 -6.2 phosphoribosyl-AMP cyclohydrolase compare
ABIE40_RS11095 -3.5 -5.3 adenosylcobinamide-phosphate synthase CbiB compare
ABIE40_RS17590 -3.4 -2.4 prephenate/arogenate dehydrogenase family protein compare
ABIE40_RS11155 -3.4 -9.2 cobaltochelatase subunit CobN compare
ABIE40_RS12925 -3.4 -12.1 pyridoxal phosphate-dependent aminotransferase compare
ABIE40_RS10155 -3.4 -2.0 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE40_RS08425 -3.4 -3.8 iron-sulfur cluster insertion protein ErpA compare
ABIE40_RS16655 -3.3 -6.1 creatininase family protein compare
ABIE40_RS20465 -3.3 -3.9 precorrin-6A synthase (deacetylating) compare
ABIE40_RS19645 -3.3 -12.0 acyltransferase compare
ABIE40_RS19445 -3.3 -3.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE40_RS16570 -3.2 -4.1 tetratricopeptide repeat protein compare
ABIE40_RS10390 -3.2 -2.6 2Fe-2S iron-sulfur cluster-binding protein compare
ABIE40_RS09090 -3.2 -9.1 nitrogen regulation protein NR(I) compare
ABIE40_RS10200 -3.2 -2.1 Grx4 family monothiol glutaredoxin compare
ABIE40_RS20445 -3.2 -1.4 precorrin-3B C(17)-methyltransferase compare
ABIE40_RS15345 -3.2 -10.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS08635 -3.1 -13.9 class I poly(R)-hydroxyalkanoic acid synthase compare
ABIE40_RS09170 -3.1 -6.2 cytochrome c biogenesis CcdA family protein compare
ABIE40_RS05545 -3.0 -3.2 Dabb family protein compare
ABIE40_RS00580 -3.0 -2.8 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE40_RS06710 -2.9 -3.6 L,D-transpeptidase family protein compare
ABIE40_RS06775 -2.9 -3.3 DUF177 domain-containing protein compare
ABIE40_RS14940 -2.9 -10.2 acyltransferase compare
ABIE40_RS06050 -2.8 -6.2 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE40_RS11605 -2.8 -11.3 AsmA-like C-terminal region-containing protein compare
ABIE40_RS05665 -2.8 -3.3 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS06725 -2.8 -5.8 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD compare
ABIE40_RS09155 -2.8 -7.0 DUF934 domain-containing protein compare
ABIE40_RS11165 -2.7 -1.9 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABIE40_RS07320 -2.7 -1.3 DUF3572 domain-containing protein compare
ABIE40_RS19365 -2.7 -3.6 double-strand break repair protein AddB compare
ABIE40_RS15010 -2.6 -9.1 metallophosphoesterase compare
ABIE40_RS03485 -2.4 -10.8 MAPEG family protein compare
ABIE40_RS00930 -2.4 -6.8 ABC transporter permease compare
ABIE40_RS04770 -2.4 -7.3 TetR/AcrR family transcriptional regulator compare
ABIE40_RS09140 -2.4 -6.6 siroheme synthase CysG compare
ABIE40_RS15890 -2.4 -6.3 fructose bisphosphate aldolase compare
ABIE40_RS26335 -2.4 -6.0 sigma-54 dependent transcriptional regulator compare
ABIE40_RS20635 -2.4 -2.9 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
ABIE40_RS00625 -2.3 -8.5 ABC transporter permease compare
ABIE40_RS20450 -2.3 -2.2 precorrin-2 C(20)-methyltransferase compare
ABIE40_RS19245 -2.3 -3.4 Maf-like protein compare
ABIE40_RS08980 -2.3 -4.5 transcriptional repressor LexA compare
ABIE40_RS18880 -2.3 -10.8 UDP-glucose 4-epimerase GalE compare
ABIE40_RS11910 -2.3 -8.9 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
ABIE40_RS00935 -2.3 -6.6 ABC transporter substrate-binding protein compare
ABIE40_RS09425 -2.3 -4.5 peptidylprolyl isomerase compare
ABIE40_RS01860 -2.3 -9.0 RNA polymerase factor sigma-54 compare
ABIE40_RS18640 -2.3 -8.3 M48 family metalloprotease compare
ABIE40_RS05670 -2.3 -4.2 membrane protein compare
ABIE40_RS17560 -2.2 -3.3 cell division ATP-binding protein FtsE compare
ABIE40_RS10100 -2.2 -6.4 branched-chain amino acid ABC transporter substrate-binding protein compare
ABIE40_RS11060 -2.2 -4.3 lipid A biosynthesis lauroyl acyltransferase compare
ABIE40_RS19260 -2.2 -2.8 DNA polymerase III subunit epsilon compare
ABIE40_RS19360 -2.2 -4.7 double-strand break repair helicase AddA compare
ABIE40_RS05155 -2.2 -3.9 DUF5330 domain-containing protein compare
ABIE40_RS08970 -2.1 -7.5 citrate synthase compare
ABIE40_RS05660 -2.1 -2.6 response regulator transcription factor compare
ABIE40_RS17450 -2.1 -7.0 YqaA family protein compare
ABIE40_RS08645 -2.1 -5.4 LL-diaminopimelate aminotransferase compare
ABIE40_RS15855 -2.1 -1.5 cell division protein ZapA compare
ABIE40_RS26345 -2.0 -11.2 dicarboxylate/amino acid:cation symporter compare
ABIE40_RS22100 -2.0 -1.5 helix-turn-helix domain-containing protein compare
ABIE40_RS00630 -2.0 -6.6 ABC transporter ATP-binding protein compare
ABIE40_RS18055 -2.0 -3.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABIE40_RS30535 -2.0 -1.5 hypothetical protein compare
ABIE40_RS12360 -2.0 -9.9 DUF5131 family protein compare
ABIE40_RS18970 -2.0 -2.4 murein hydrolase activator EnvC compare
ABIE40_RS04470 -1.9 -9.9 sulfate adenylyltransferase subunit CysD compare
ABIE40_RS11960 -1.9 -2.2 energy-dependent translational throttle protein EttA compare
ABIE40_RS01055 -1.9 -4.8 translation elongation factor 4 compare
ABIE40_RS00340 -1.9 -3.1 30S ribosome-binding factor RbfA compare
ABIE40_RS19615 -1.8 -1.9 DUF1109 domain-containing protein compare
ABIE40_RS08500 -1.8 -2.2 preprotein translocase subunit YajC compare
ABIE40_RS09770 -1.8 -4.9 D-alanyl-D-alanine carboxypeptidase compare
ABIE40_RS27585 -1.8 -1.7 hypothetical protein compare
ABIE40_RS04475 -1.8 -8.0 phosphoadenylyl-sulfate reductase compare
ABIE40_RS18690 -1.8 -7.0 acetyl-CoA C-acetyltransferase compare
ABIE40_RS05165 -1.8 -3.6 peptidoglycan-binding protein compare
ABIE40_RS08835 -1.7 -2.2 alpha/beta fold hydrolase compare
ABIE40_RS10590 -1.7 -1.8 hypothetical protein compare
ABIE40_RS15620 -1.7 -1.9 tol-pal system-associated acyl-CoA thioesterase compare
ABIE40_RS19100 -1.7 -6.2 lytic transglycosylase domain-containing protein compare
ABIE40_RS10345 -1.7 -4.5 RNA polymerase-binding protein DksA compare
ABIE40_RS06720 -1.7 -1.6 transcriptional regulator NrdR compare
ABIE40_RS09320 -1.7 -10.2 extracellular solute-binding protein compare
ABIE40_RS09720 -1.7 -3.0 GTP cyclohydrolase I FolE compare
ABIE40_RS00620 -1.7 -7.0 microcin C ABC transporter permease YejB compare
ABIE40_RS00725 -1.6 -4.0 DNA cytosine methyltransferase compare
ABIE40_RS19700 -1.6 -2.8 MBL fold metallo-hydrolase compare
ABIE40_RS19395 -1.6 -2.3 PTS sugar transporter subunit IIA compare
ABIE40_RS08140 -1.6 -8.7 vitamin B12-dependent ribonucleotide reductase compare
ABIE40_RS10035 -1.6 -2.7 DUF3971 domain-containing protein compare
ABIE40_RS16060 -1.6 -3.0 DUF465 domain-containing protein compare
ABIE40_RS19455 -1.6 -1.1 DUF2628 domain-containing protein compare
ABIE40_RS07475 -1.5 -1.9 NADH:ubiquinone oxidoreductase subunit NDUFA12 compare
ABIE40_RS10420 -1.5 -5.2 MCE family protein compare
ABIE40_RS00460 -1.5 -2.5 transglycosylase domain-containing protein compare
ABIE40_RS08485 -1.5 -4.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABIE40_RS30510 -1.4 -1.5 CBS domain-containing protein compare
ABIE40_RS04465 -1.4 -8.2 sulfate adenylyltransferase subunit CysN compare
ABIE40_RS08935 -1.4 -1.6 RIP metalloprotease RseP compare
ABIE40_RS26340 -1.4 -6.8 ATP-binding protein compare
ABIE40_RS18800 -1.4 -7.3 glucoamylase family protein compare
ABIE40_RS07105 -1.4 -1.5 DNA-binding protein HupB compare
ABIE40_RS10705 -1.4 -9.0 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS13370 -1.4 -7.3 CDF family cation efflux transporter EmfA compare
ABIE40_RS10415 -1.4 -6.6 ABC-type transport auxiliary lipoprotein family protein compare
ABIE40_RS15650 -1.4 -5.1 TIGR00282 family metallophosphoesterase compare
ABIE40_RS10430 -1.3 -7.4 MlaE family lipid ABC transporter permease subunit compare
ABIE40_RS01355 -1.3 -5.4 phospholipid N-methyltransferase PmtA compare
ABIE40_RS02525 -1.3 -7.8 peptidoglycan-binding protein compare
ABIE40_RS02305 -1.3 -4.4 phosphate signaling complex protein PhoU compare
ABIE40_RS04820 -1.3 -2.2 TetR family transcriptional regulator compare
ABIE40_RS26785 -1.3 -2.0 CsbD family protein compare
ABIE40_RS07335 -1.3 -1.1 50S ribosomal protein L33 compare
ABIE40_RS06575 -1.3 -6.4 RNA degradosome polyphosphate kinase compare
ABIE40_RS19495 -1.3 -7.4 L,D-transpeptidase compare
ABIE40_RS17000 -1.2 -3.3 ABC transporter ATP-binding protein compare
ABIE40_RS10425 -1.2 -3.4 ABC transporter ATP-binding protein compare
ABIE40_RS22085 -1.2 -1.6 putative quinol monooxygenase compare
ABIE40_RS01705 -1.2 -4.9 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
ABIE40_RS15920 -1.2 -0.6 50S ribosomal protein L31 compare
ABIE40_RS09085 -1.2 -3.9 nitrogen regulation protein NR(II) compare
ABIE40_RS04180 -1.2 -2.5 hypothetical protein compare
ABIE40_RS10535 -1.2 -7.8 L,D-transpeptidase family protein compare
ABIE40_RS27110 -1.2 -2.0 helix-turn-helix transcriptional regulator compare
ABIE40_RS26865 -1.2 -1.7 hypothetical protein compare
ABIE40_RS10140 -1.2 -1.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS17010 -1.2 -5.0 sugar ABC transporter permease compare
ABIE40_RS01680 -1.2 -5.3 helix-turn-helix domain-containing protein compare


Specific Phenotypes

None in this experiment

For Rhizobium sp. OAE497 in carbon source experiments

For carbon source Carnitine Hydrochloride across organisms