Experiment set1IT079 for Pseudomonas putida KT2440

Compare to:

Glucose carbon source (40mM)

200 most important genes:

  gene name fitness t score description  
PP_5185 -5.6 -3.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0293 -5.5 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -5.5 -5.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0422 -5.5 -5.4 Indole-3-glycerol phosphate synthase compare
PP_5015 -5.4 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4678 -5.4 -7.4 Ketol-acid reductoisomerase compare
PP_3511 -5.1 -7.0 Branched-chain-amino-acid aminotransferase compare
PP_1088 -5.1 -9.8 Argininosuccinate synthase compare
PP_0966 -5.1 -7.8 Histidinol dehydrogenase compare
PP_5098 -5.1 -4.9 methionine biosynthesis protein MetW compare
PP_0082 -5.1 -4.9 tryptophan synthase alpha chain compare
PP_0184 -5.0 -7.6 Argininosuccinate lyase compare
PP_0965 -4.9 -8.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0083 -4.9 -3.4 tryptophan synthase beta chain compare
PP_5289 -4.9 -4.7 Acetylglutamate kinase compare
PP_1995 -4.9 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4679 -4.9 -4.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2168 -4.8 -9.2 Transaldolase compare
PP_1988 -4.8 -7.3 3-isopropylmalate dehydrogenase compare
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_5097 -4.7 -10.5 homoserine O-acetyltransferase compare
PP_5014 -4.7 -3.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_0967 -4.7 -9.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0292 -4.7 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4799 -4.7 -3.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4909 -4.6 -6.3 phosphoserine phosphatase compare
PP_0417 -4.6 -14.7 Anthranilate synthase component 1 compare
PP_4890 -4.6 -5.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_1079 -4.6 -6.2 Ornithine carbamoyltransferase compare
PP_0289 -4.5 -7.6 Imidazoleglycerol-phosphate dehydratase compare
PP_0420 -4.5 -9.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4680 -4.5 -10.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1985 -4.3 -5.0 3-isopropylmalate dehydratase large subunit compare
PP_5348 -4.3 -8.6 Transcriptional regulator, LysR family compare
PP_1986 -4.2 -2.9 3-isopropylmalate dehydratase small subunit compare
PP_5346 -4.2 -8.8 pyruvate carboxylase subunit B compare
PP_4723 -4.1 -6.2 Carbamoyl-phosphate synthase large chain compare
PP_0421 -4.0 -9.2 Anthranilate phosphoribosyltransferase compare
PP_1022 -4.0 -7.1 glucose 6-phosphate-1-dehydrogenase compare
PP_5303 -3.9 -6.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2371 -3.9 -4.6 Sulphite reductase hemoprotein, beta subunit compare
PP_4696 -3.9 -8.5 Nitrogen regulation protein NR(I) compare
PP_0691 -3.7 -5.8 Glutamate 5-kinase compare
PP_5347 -3.7 -9.8 pyruvate carboxylase subunit A compare
PP_5128 -3.6 -10.6 Dihydroxy-acid dehydratase compare
PP_2001 -3.5 -8.1 O-succinylhomoserine sulfhydrylase compare
PP_4724 -3.5 -4.2 Carbamoyl-phosphate synthase small chain compare
PP_2327 -3.4 -8.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0760 -3.3 -4.5 conserved membrane protein of unknown function compare
PP_2000 -3.3 -2.2 amidophosphoribosyl transferase compare
PP_4693 -3.3 -7.3 RNA polymerase-binding transcription factor DksA compare
PP_5155 -3.2 -4.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3999 -3.1 -5.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1664 -3.1 -6.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_0164 -2.9 -8.0 conserved protein of unknown function compare
PP_2328 -2.7 -5.8 Phosphoadenosine phosphosulfate reductase compare
PP_2402 -2.7 -3.5 putative Sensor histidine kinase compare
PP_1656 -2.7 -6.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_1025 -2.6 -8.2 2-isopropylmalate synthase compare
PP_0339 -2.4 -3.6 Pyruvate dehydrogenase E1 component compare
PP_4700 -2.2 -4.7 pantothenate synthetase compare
PP_1362 -2.2 -5.5 pyruvate kinase II compare
PP_5095 -2.2 -2.5 pyrroline-5-carboxylate reductase compare
PP_0218 -2.1 -9.9 Sensory box protein compare
PP_1912 -2.1 -5.5 Phosphate acyltransferase compare
PP_2370 -2.0 -2.5 conserved protein of unknown function compare
PP_0065 -1.9 -5.1 NAD-binding component of TrK potassium transporter compare
PP_0291 -1.9 -2.5 conserved protein of unknown function compare
PP_5227 -1.9 -8.5 diaminopimelate decarboxylase compare
PP_0393 -1.8 -3.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4364 -1.8 -4.1 putative Anti-sigma F factor antagonist compare
PP_4227 -1.7 -1.6 conserved protein of unknown function compare
PP_3790 -1.7 -7.5 diaminopimelate epimerase compare
PP_4120 -1.6 -4.8 NADH-quinone oxidoreductase subunit B compare
PP_3417 -1.6 -5.1 D-gluconate transporter compare
PP_4546 -1.6 -5.0 ATP-dependent helicase HrpA compare
PP_5350 -1.5 -4.4 Transcriptional regulator, RpiR family compare
PP_1629 -1.4 -6.4 Protein RecA compare
PP_4004 -1.4 -3.5 DNA translocase FtsK compare
PP_4997 -1.3 -2.0 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4902 -1.3 -2.9 Oligoribonuclease compare
PP_1493 -1.2 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_t12 -1.2 -1.1 tRNA-Thr compare
PP_1770 -1.2 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_0914 -1.2 -6.7 GGDEF domain protein compare
PP_5248 -1.2 -1.7 putative hydrolase compare
PP_1733 -1.1 -2.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_1589 -1.1 -6.6 uridylyltransferase compare
PP_0801 -1.1 -1.5 conserved exported protein of unknown function compare
PP_3880 -1.1 -1.5 conserved exported protein of unknown function compare
PP_5048 -1.1 -3.7 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0809 -1.1 -6.1 disulfide bond formation protein B compare
PP_4943 -1.1 -2.5 putative Glycosyl transferase compare
PP_3411 -1.1 -1.3 conserved protein of unknown function compare
PP_0980 -1.1 -4.3 Probable cytosol aminopeptidase compare
PP_4109 -1.0 -2.6 conserved protein of unknown function compare
PP_2568 -1.0 -1.3 Ring-cleaving dioxygenase compare
PP_1217 -1.0 -4.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4642 -1.0 -1.3 Cyclic diguanosine monophosphate-binding protein compare
PP_5483 -1.0 -1.9 conserved protein of unknown function compare
PP_1216 -1.0 -2.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5035 -1.0 -4.8 Histidine utilization repressor compare
PP_3447 -1.0 -1.5 conserved membrane protein of unknown function compare
PP_3773 -1.0 -2.3 conserved protein of unknown function compare
PP_0575 -1.0 -3.2 conserved membrane protein of unknown function compare
PP_0673 -1.0 -2.3 conserved protein of unknown function compare
PP_0406 -1.0 -2.9 Nucleotidyltransferase family protein compare
PP_0261 -1.0 -3.9 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_2147 -0.9 -2.3 conserved exported protein of unknown function compare
PP_0833 -0.9 -1.9 queuine tRNA-ribosyltransferase compare
PP_5022 -0.9 -1.3 Glutamine transport ATP-binding protein GlnQ compare
PP_1097 -0.9 -1.3 Methionine--tRNA ligase compare
PP_5640 -0.9 -2.3 conserved protein of unknown function compare
PP_4874 -0.9 -1.4 50S ribosomal protein L9 compare
PP_4804 -0.9 -3.2 RlpA-like lipoprotein compare
PP_0236 -0.9 -2.0 NAD(P)H-dependent FMN reductase subunit compare
PP_5327 -0.9 -3.2 putative phosphate ABC transporter, permease subunit compare
PP_1304 -0.9 -5.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3810 -0.9 -1.9 conserved protein of unknown function compare
PP_2378 -0.9 -2.3 Fe/S biogenesis protein NfuA compare
PP_4247 -0.9 -1.2 Exonuclease compare
PP_1045 -0.9 -1.5 Type II secretion pathway protein XcpP compare
PP_5572 -0.9 -2.4 protein of unknown function compare
PP_4695 -0.9 -5.4 Sensory box histidine kinase compare
PP_3328 -0.9 -1.7 putative Ring-cleaving dioxygenase compare
PP_5589 -0.9 -2.3 protein of unknown function containing Rhs repeat-associated core domain compare
PP_5168 -0.9 -2.7 sulfate/thiosulfate import ATP-binding protein compare
PP_3662 -0.9 -4.5 conserved protein of unknown function compare
PP_4917 -0.9 -3.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4045 -0.9 -2.2 conserved protein of unknown function compare
PP_1237 -0.8 -1.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0381 -0.8 -3.2 Coenzyme PQQ synthesis protein F compare
PP_2177 -0.8 -2.9 putative transcriptional regulator compare
PP_5230 -0.8 -2.6 Tyrosine recombinase XerC compare
PP_4098 -0.8 -1.8 UvrABC system protein C compare
PP_1215 -0.8 -1.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_1783 -0.8 -2.4 dTDP-glucose pyrophosphorylase compare
PP_1128 -0.8 -2.4 OmpA family protein compare
PP_2414 -0.8 -1.0 conserved exported protein of unknown function compare
PP_1632 -0.8 -0.9 conserved protein of unknown function compare
PP_4124 -0.8 -3.1 NADH-quinone oxidoreductase subunit G compare
PP_4126 -0.8 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_2280 -0.8 -1.5 conserved protein of unknown function compare
PP_0007 -0.8 -2.4 conserved hypothetical protein compare
PP_3580 -0.8 -1.1 conserved protein of unknown function compare
PP_3814 -0.8 -2.9 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_3766 -0.8 -1.9 Lactoylglutathione lyase compare
PP_2145 -0.8 -2.3 beta-N-acetylglucosaminidase compare
PP_4130 -0.8 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5628 -0.8 -1.8 conserved protein of unknown function compare
PP_3392 -0.8 -1.5 conserved protein of unknown function compare
PP_4131 -0.8 -3.5 NADH-quinone oxidoreductase subunit N compare
PP_3821 -0.8 -4.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5667 -0.8 -2.2 putative microcin B17-like-processing protein, McbC family compare
PP_3649 -0.8 -2.7 Transcriptional regulator, GntR family compare
PP_0086 -0.8 -2.0 conserved protein of unknown function compare
PP_2756 -0.8 -1.9 conserved protein of unknown function compare
PP_0440 -0.8 -1.9 Elongation factor Tu-A compare
PP_4271 -0.7 -0.7 conserved protein of unknown function compare
PP_1435 -0.7 -2.7 DNA repair protein RecO compare
PP_3359 -0.7 -1.8 putative Hydroxycinnamic acid degradation regulator compare
PP_0063 -0.7 -3.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2302 -0.7 -3.1 DNA-binding, ATP-dependent protease compare
PP_5309 -0.7 -3.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2509 -0.7 -1.7 conserved protein of unknown function compare
PP_2863 -0.7 -2.5 conserved membrane protein of unknown function compare
PP_4828 -0.7 -0.6 Precorrin-8X methylmutase compare
PP_4262 -0.7 -1.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0839 -0.7 -2.0 tRNA Cm32/Um32 methyltransferase compare
PP_2144 -0.7 -2.7 Transcriptional regulator, TetR family compare
PP_0685 -0.7 -1.3 conserved protein of unknown function compare
PP_4895 -0.7 -2.3 tRNA dimethylallyltransferase compare
PP_4824 -0.7 -3.8 Sensor histidine kinase/response regulator compare
PP_0653 -0.7 -1.2 conserved protein of unknown function compare
PP_2345 -0.7 -1.9 conserved exported protein of unknown function compare
PP_4254 -0.7 -1.5 conserved protein of unknown function compare
PP_t11 -0.7 -1.4 tRNA-Lys compare
PP_1011 -0.7 -3.7 glucokinase compare
PP_2773 -0.7 -1.2 conserved protein of unknown function compare
PP_0087 -0.7 -1.8 conserved exported protein of unknown function compare
PP_4482 -0.7 -2.0 Transcriptional regulator, AraC family compare
PP_0127 -0.7 -2.3 Thiol:disulfide interchange protein compare
PP_3094 -0.7 -1.5 conserved exported protein of unknown function compare
PP_0378 -0.7 -3.7 Pyrroloquinoline-quinone synthase compare
PP_5556 -0.7 -2.0 putative bacteriophage lysis protein compare
PP_0513 -0.7 -1.3 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_2928 -0.7 -3.6 Saccharopine dehydrogenase compare
PP_4296 -0.7 -1.1 conserved exported protein of unknown function compare
PP_4593 -0.7 -0.9 conserved protein of unknown function compare
PP_2322 -0.7 -2.6 Major outer membrane lipoprotein compare
PP_1428 -0.7 -1.4 Sigma factor AlgU negative regulatory protein compare
PP_5310 -0.7 -2.7 junction-specific ATP-dependent DNA helicase compare
PP_5359 -0.7 -1.9 CobW/P47K family protein compare
PP_4964 -0.7 -1.8 D-erythrose 4-phosphate dehydrogenase compare
PP_5546 -0.7 -0.8 conserved protein of unknown function compare
PP_0123 -0.7 -4.0 DNA polymerase I, 5 compare
PP_3926 -0.7 -1.0 short-chain dehydrogenase compare
PP_3776 -0.6 -3.6 putative permease (RarD protein) compare
PP_1609 -0.6 -1.7 conserved protein of unknown function compare
PP_1864 -0.6 -1.8 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms