Experiment set1IT079 for Pseudomonas sp. RS175

Compare to:

D-Glucosamine Hydrochloride carbon 10 mM

200 most important genes:

  gene name fitness t score description  
PFR28_01389 -6.1 -8.4 D-threonine aldolase conserved
PFR28_02821 -5.7 -16.4 3-isopropylmalate dehydrogenase compare
PFR28_04929 -5.7 -3.9 Histidine biosynthesis bifunctional protein HisB compare
PFR28_03860 -5.6 -5.5 putative murein peptide carboxypeptidase compare
PFR28_05125 -5.6 -8.6 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_04930 -5.5 -8.5 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_04278 -5.3 -13.2 Dihydroxy-acid dehydratase compare
PFR28_02824 -5.2 -7.1 3-isopropylmalate dehydratase large subunit compare
PFR28_02823 -5.0 -3.4 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_01386 -4.9 -4.7 Glutamine transport ATP-binding protein GlnQ compare
PFR28_03697 -4.9 -16.5 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_00187 -4.8 -15.6 Histidinol dehydrogenase compare
PFR28_04986 -4.8 -7.3 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_01366 -4.7 -10.5 Sulfite reductase [ferredoxin] compare
PFR28_04933 -4.5 -4.2 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_01385 -4.4 -13.4 L-cystine transport system permease protein TcyB conserved
PFR28_00186 -4.4 -7.3 ATP phosphoribosyltransferase compare
PFR28_02811 -4.3 -5.9 Amidophosphoribosyltransferase compare
PFR28_04308 -4.3 -3.0 Amino-acid acetyltransferase compare
PFR28_00926 -4.3 -2.9 hypothetical protein compare
PFR28_01383 -4.3 -14.5 Major cell-binding factor conserved
PFR28_03699 -4.2 -6.4 Acetolactate synthase isozyme 3 large subunit compare
PFR28_03217 -4.2 -2.9 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_05016 -4.1 -16.9 Glutamate synthase [NADPH] small chain compare
PFR28_04932 -4.1 -7.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_00305 -4.0 -11.0 2-isopropylmalate synthase compare
PFR28_01384 -4.0 -14.0 Glutamine transport system permease protein GlnP conserved
PFR28_04202 -4.0 -5.5 5,10-methylenetetrahydrofolate reductase compare
PFR28_00403 -3.9 -5.9 Regulator of sigma-E protease RseP compare
PFR28_05015 -3.9 -26.3 Glutamate synthase [NADPH] large chain compare
PFR28_05105 -3.7 -12.4 Phosphoserine phosphatase SerB2 compare
PFR28_00913 -3.7 -10.3 Integration host factor subunit beta compare
PFR28_03718 -3.6 -5.5 Transcriptional regulatory protein ZraR compare
PFR28_00194 -3.6 -14.9 Bifunctional enzyme CysN/CysC compare
PFR28_04834 -3.6 -17.7 L-threonine dehydratase biosynthetic IlvA compare
PFR28_02426 -3.5 -16.2 HTH-type transcriptional regulator MurR compare
PFR28_03363 -3.4 -18.9 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_00193 -3.4 -15.0 Sulfate adenylyltransferase subunit 2 compare
PFR28_03513 -3.4 -5.1 hypothetical protein compare
PFR28_04245 -3.4 -17.4 Homoserine O-succinyltransferase compare
PFR28_02810 -3.3 -15.4 O-succinylhomoserine sulfhydrylase compare
PFR28_05139 -3.3 -3.2 hypothetical protein compare
PFR28_01365 -3.1 -8.2 hypothetical protein compare
PFR28_02719 -3.1 -6.3 Integration host factor subunit alpha compare
PFR28_04246 -3.1 -11.0 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_04985 -3.1 -7.0 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_02603 -3.0 -9.7 Siroheme synthase compare
PFR28_04842 -2.9 -6.4 D-3-phosphoglycerate dehydrogenase compare
PFR28_04436 -2.8 -10.1 hypothetical protein compare
PFR28_03724 -2.8 -9.1 Glucose-6-phosphate isomerase compare
PFR28_03698 -2.8 -10.3 Acetolactate synthase isozyme 3 small subunit compare
PFR28_01060 -2.8 -10.0 HTH-type transcriptional repressor NanR compare
PFR28_00837 -2.8 -5.8 hypothetical protein compare
PFR28_00918 -2.7 -9.7 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
PFR28_03223 -2.4 -12.9 GTP pyrophosphokinase compare
PFR28_00170 -2.4 -8.7 RNase adapter protein RapZ compare
PFR28_04832 -2.3 -10.1 putative phosphatase compare
PFR28_04518 -2.3 -8.7 2-oxoglutarate carboxylase small subunit compare
PFR28_04564 -2.3 -12.2 Aspartate-semialdehyde dehydrogenase compare
PFR28_03218 -2.2 -8.8 Phosphoribosylglycinamide formyltransferase compare
PFR28_03151 -2.2 -3.6 Septum site-determining protein MinC compare
PFR28_02838 -2.2 -11.1 Aromatic-amino-acid aminotransferase compare
PFR28_03412 -2.2 -6.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_02094 -2.2 -1.8 Glycerol-3-phosphate regulon repressor compare
PFR28_04517 -2.2 -12.3 Oxaloacetate decarboxylase alpha chain compare
PFR28_00098 -2.0 -9.1 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_04565 -1.9 -11.0 Protein RarD compare
PFR28_02608 -1.9 -2.6 DNA translocase FtsK compare
PFR28_03414 -1.8 -3.6 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_00196 -1.8 -6.9 Phosphate acetyltransferase compare
PFR28_01930 -1.8 -3.5 HTH-type transcriptional regulator McbR compare
PFR28_03388 -1.8 -10.7 Quinolinate synthase A compare
PFR28_04903 -1.8 -7.7 hypothetical protein compare
PFR28_03012 -1.8 -6.8 Phosphate acyltransferase compare
PFR28_01884 -1.7 -6.7 putative enoyl-CoA hydratase echA8 compare
PFR28_01265 -1.7 -6.1 (R)-benzylsuccinyl-CoA dehydrogenase compare
PFR28_04902 -1.7 -7.2 Inner membrane protein YgaZ compare
PFR28_01118 -1.7 -3.5 hypothetical protein compare
PFR28_04887 -1.6 -3.9 '3'(2'),5'-bisphosphate nucleotidase CysQ' transl_table=11 compare
PFR28_01388 -1.6 -2.0 HTH-type transcriptional regulator XynR compare
PFR28_00356 -1.6 -6.6 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_02846 -1.6 -7.2 Adaptive-response sensory-kinase SasA compare
PFR28_02344 -1.6 -6.6 Chaperone protein HscC compare
PFR28_03423 -1.5 -8.3 Porin D compare
PFR28_04030 -1.5 -11.2 hypothetical protein compare
PFR28_04519 -1.5 -5.7 HTH-type transcriptional activator CmpR compare
PFR28_01387 -1.5 -1.5 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_03596 -1.5 -2.8 Transcriptional regulator MraZ compare
PFR28_04103 -1.5 -7.7 Biotin synthase compare
PFR28_00169 -1.5 -4.3 Phosphocarrier protein NPr compare
PFR28_04071 -1.4 -1.7 Multifunctional CCA protein compare
PFR28_00188 -1.4 -9.2 Histidinol-phosphate aminotransferase compare
PFR28_03282 -1.4 -6.6 Arginine N-succinyltransferase subunit alpha compare
PFR28_04782 -1.4 -9.3 hypothetical protein compare
PFR28_02484 -1.3 -8.7 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_04059 -1.3 -8.3 N-acetylmuramate alpha-1-phosphate uridylyltransferase compare
PFR28_03369 -1.3 -7.3 Glycerol-3-phosphate regulon repressor compare
PFR28_02423 -1.3 -3.6 5-deoxy-glucuronate isomerase compare
PFR28_00560 -1.3 -8.1 Glyceraldehyde-3-phosphate dehydrogenase 1 compare
PFR28_02345 -1.3 -7.8 hypothetical protein compare
PFR28_03413 -1.3 -3.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_03304 -1.3 -1.5 hypothetical protein compare
PFR28_00595 -1.2 -7.1 High-affinity gluconate transporter compare
PFR28_04345 -1.2 -9.7 Polyphosphate kinase compare
PFR28_04325 -1.2 -6.0 5-formyltetrahydrofolate cyclo-ligase compare
PFR28_04435 -1.2 -4.7 ATP-dependent DNA helicase RecG compare
PFR28_01881 -1.2 -3.1 putative oxidoreductase compare
PFR28_02201 -1.2 -2.4 Chaperone SurA compare
PFR28_04865 -1.2 -5.9 Glutamate--cysteine ligase compare
PFR28_03716 -1.1 -3.9 hypothetical protein compare
PFR28_00068 -1.1 -1.0 hypothetical protein compare
PFR28_00325 -1.1 -3.8 Inner membrane protein YpjD compare
PFR28_01230 -1.1 -4.0 Lon protease compare
PFR28_04423 -1.1 -2.9 DNA-directed RNA polymerase subunit omega compare
PFR28_05071 -1.1 -3.3 D-inositol-3-phosphate glycosyltransferase compare
PFR28_00573 -1.0 -6.7 Glucose-6-phosphate 1-dehydrogenase compare
PFR28_04628 -1.0 -2.7 Thiol:disulfide interchange protein DsbA compare
PFR28_03883 -1.0 -4.6 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase compare
PFR28_03420 -1.0 -3.6 hypothetical protein compare
PFR28_02678 -1.0 -2.4 hypothetical protein compare
PFR28_04831 -1.0 -2.2 RNA pyrophosphohydrolase compare
PFR28_00100 -1.0 -4.0 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFR28_03721 -1.0 -3.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFR28_02614 -1.0 -3.9 ATP-dependent Clp protease adapter protein ClpS compare
PFR28_05212 -1.0 -6.3 Sensor histidine kinase RcsC compare
PFR28_01258 -1.0 -3.7 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
PFR28_04958 -1.0 -1.3 hypothetical protein compare
PFR28_00427 -1.0 -7.8 RNA polymerase sigma factor RpoS compare
PFR28_00839 -1.0 -3.8 hypothetical protein compare
PFR28_04931 -0.9 -2.3 hypothetical protein compare
PFR28_03664 -0.9 -2.2 Ribosome-binding ATPase YchF compare
PFR28_01156 -0.9 -3.8 hypothetical protein compare
PFR28_01003 -0.9 -3.0 hypothetical protein compare
PFR28_03182 -0.9 -2.4 Recombination-associated protein RdgC compare
PFR28_01210 -0.9 -6.2 hypothetical protein compare
PFR28_01031 -0.9 -3.3 Sensor protein QseC compare
PFR28_02817 -0.9 -4.8 tRNA pseudouridine synthase A compare
PFR28_05070 -0.9 -1.5 nebramycin 5 compare
PFR28_00633 -0.9 -7.2 HTH-type transcriptional regulator TtgR compare
PFR28_04377 -0.9 -4.0 hypothetical protein compare
PFR28_04689 -0.9 -4.6 Cytochrome c oxidase assembly protein CtaG compare
PFR28_02346 -0.9 -4.1 hypothetical protein compare
PFR28_03255 -0.9 -6.7 Chemotaxis protein methyltransferase Cher2 compare
PFR28_02940 -0.9 -5.8 Phosphoglycolate phosphatase conserved
PFR28_02403 -0.9 -1.6 Na(+)/H(+) antiporter subunit C1 compare
PFR28_01084 -0.9 -2.9 hypothetical protein compare
PFR28_00331 -0.9 -3.2 Tyrosine recombinase XerD compare
PFR28_00851 -0.9 -1.4 Flagellum site-determining protein YlxH compare
PFR28_02427 -0.9 -2.5 hypothetical protein compare
PFR28_00966 -0.9 -6.6 HTH-type transcriptional regulator CysB compare
PFR28_04403 -0.9 -1.5 hypothetical protein compare
PFR28_01110 -0.9 -3.2 Fatty acid oxidation complex subunit alpha compare
PFR28_00126 -0.9 -3.2 Dipeptide transport system permease protein DppC compare
PFR28_00304 -0.9 -1.5 hypothetical protein compare
PFR28_05120 -0.8 -5.7 tRNA dimethylallyltransferase compare
PFR28_02688 -0.8 -1.7 hypothetical protein compare
PFR28_03822 -0.8 -1.4 Acetyltransferase compare
PFR28_00988 -0.8 -5.1 Sensor histidine kinase RcsC compare
PFR28_02254 -0.8 -4.6 Multidrug resistance protein MdtA compare
PFR28_03455 -0.8 -3.3 Pyruvate kinase II compare
PFR28_04485 -0.8 -1.8 Phosphate-specific transport system accessory protein PhoU compare
PFR28_01259 -0.8 -4.9 Methylmalonyl-CoA carboxyltransferase 12S subunit compare
PFR28_04052 -0.8 -6.9 hypothetical protein compare
PFR28_00948 -0.8 -1.8 hypothetical protein compare
PFR28_04378 -0.8 -2.1 Tyrosine recombinase XerC compare
PFR28_00503 -0.8 -1.9 Histidine transport ATP-binding protein HisP compare
PFR28_01855 -0.8 -0.9 Hypoxic response protein 1 compare
PFR28_00535 -0.8 -2.1 hypothetical protein compare
PFR28_02425 -0.8 -2.2 5-dehydro-2-deoxygluconokinase compare
PFR28_03169 -0.8 -4.8 Tail-specific protease compare
PFR28_05078 -0.8 -1.6 hypothetical protein compare
PFR28_04087 -0.8 -3.8 Coenzyme PQQ synthesis protein B compare
PFR28_02210 -0.8 -1.2 cAMP-activated global transcriptional regulator CRP compare
PFR28_01081 -0.7 -3.9 hypothetical protein compare
PFR28_00932 -0.7 -6.8 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase compare
PFR28_03232 -0.7 -2.4 putative protein YfgD compare
PFR28_04521 -0.7 -3.3 HTH-type transcriptional regulator HexR compare
PFR28_01042 -0.7 -1.1 hypothetical protein compare
PFR28_02570 -0.7 -3.4 HTH-type transcriptional regulator CdhR compare
PFR28_04805 -0.7 -2.9 hypothetical protein compare
PFR28_01661 -0.7 -1.4 Delta(1)-pyrroline-2-carboxylate/Delta(1)- piperideine-2-carboxylate reductase compare
PFR28_04056 -0.7 -4.3 Membrane-bound lytic murein transglycosylase F compare
PFR28_01114 -0.7 -3.6 hypothetical protein compare
PFR28_02283 -0.7 -1.8 hypothetical protein compare
PFR28_03244 -0.7 -2.9 Transcriptional regulatory protein PhoP compare
PFR28_02421 -0.7 -4.1 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase compare
PFR28_04335 -0.7 -2.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PFR28_01408 -0.7 -1.8 hypothetical protein compare
PFR28_01587 -0.7 -0.9 hypothetical protein compare
PFR28_00024 -0.7 -2.4 hypothetical protein compare
PFR28_02206 -0.7 -1.9 Biopolymer transport protein ExbD compare
PFR28_00425 -0.7 -5.4 Protein-L-isoaspartate O-methyltransferase compare
PFR28_00960 -0.7 -6.0 hypothetical protein compare
PFR28_00690 -0.7 -2.5 RNA polymerase sigma-H factor compare
PFR28_04366 -0.7 -4.6 Sensory transduction protein LytR compare
PFR28_01173 -0.7 -1.2 hypothetical protein compare
PFR28_05075 -0.7 -5.1 hypothetical protein compare
PFR28_04100 -0.7 -3.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_05046 -0.7 -1.2 hypothetical protein compare
PFR28_04072 -0.7 -2.3 Bifunctional folate synthesis protein compare


Specific Phenotypes

For 16 genes in this experiment

For carbon source D-Glucosamine Hydrochloride in Pseudomonas sp. RS175

For carbon source D-Glucosamine Hydrochloride across organisms