Experiment set1IT079 for Serratia liquefaciens MT49

Compare to:

Potassium dichromate 20 uM, anaerobic

200 most important genes:

  gene name fitness t score description  
IAI46_13260 -4.5 -4.3 FNR family transcription factor compare
IAI46_02130 -4.3 -8.7 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
IAI46_00735 -4.2 -6.4 DNA helicase II compare
IAI46_18460 -3.7 -5.0 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI46_20730 -3.5 -2.4 site-specific tyrosine recombinase XerD compare
IAI46_24645 -3.4 -7.2 6-phosphofructokinase compare
IAI46_02135 -3.2 -15.2 anaerobic ribonucleoside-triphosphate reductase compare
IAI46_00725 -3.2 -2.2 tyrosine recombinase XerC compare
IAI46_24770 -3.1 -3.6 polysaccharide deacetylase family protein compare
IAI46_24755 -3.1 -8.1 O-antigen ligase family protein compare
IAI46_24750 -3.0 -2.1 glycosyltransferase compare
IAI46_23090 -2.9 -14.0 glucose-6-phosphate isomerase compare
IAI46_17750 -2.8 -5.6 acetate kinase compare
IAI46_24760 -2.8 -4.7 glycosyltransferase compare
IAI46_20670 -2.6 -2.3 Hpt domain-containing protein compare
IAI46_23690 -2.5 -2.4 adenine-specific DNA-methyltransferase compare
IAI46_18770 -2.5 -4.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI46_17810 -2.5 -11.4 amidophosphoribosyltransferase compare
IAI46_24985 -2.4 -8.2 DNA polymerase I compare
IAI46_25195 -2.4 -2.2 phosphate signaling complex protein PhoU compare
IAI46_00640 -2.3 -6.3 ECA oligosaccharide polymerase compare
IAI46_24785 -2.3 -2.2 glycosyltransferase compare
IAI46_01360 -2.3 -12.3 phosphoribosylamine--glycine ligase compare
IAI46_24945 -2.3 -2.2 ribosome-dependent GTPase TypA compare
IAI46_01365 -2.2 -12.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI46_01620 -2.2 -3.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI46_25250 -2.2 -4.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI46_08610 -2.0 -11.6 formate C-acetyltransferase compare
IAI46_03015 -2.0 -5.3 two-component system response regulator ArcA compare
IAI46_03840 -2.0 -4.3 recombinase RecA compare
IAI46_24665 -2.0 -5.4 envelope stress sensor histidine kinase CpxA compare
IAI46_19475 -1.9 -13.3 phosphoribosylformylglycinamidine synthase compare
IAI46_05375 -1.8 -2.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI46_17755 -1.8 -3.8 phosphate acetyltransferase compare
IAI46_08605 -1.8 -5.8 pyruvate formate lyase 1-activating protein compare
IAI46_15050 -1.7 -2.4 hypothetical protein compare
IAI46_00630 -1.6 -5.5 lipid III flippase WzxE compare
IAI46_21210 -1.6 -6.1 RNA polymerase-binding protein DksA compare
IAI46_01955 -1.6 -7.2 polyribonucleotide nucleotidyltransferase compare
IAI46_16460 -1.5 -2.0 glycogen synthesis protein compare
IAI46_18885 -1.5 -5.4 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI46_11305 -1.4 -1.7 DUF1289 domain-containing protein compare
IAI46_08060 -1.4 -2.1 glycosyltransferase family 4 protein compare
IAI46_23240 -1.4 -4.2 shikimate dehydrogenase compare
IAI46_22335 -1.4 -8.3 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI46_06505 -1.3 -2.0 6-phosphogluconolactonase compare
IAI46_09740 -1.3 -4.7 dihydroorotase compare
IAI46_20595 -1.3 -1.8 hypothetical protein compare
IAI46_10800 -1.3 -4.9 carboxy terminal-processing peptidase compare
IAI46_05385 -1.3 -1.3 peptidylprolyl isomerase B compare
IAI46_13920 -1.3 -2.6 DUF1471 domain-containing protein compare
IAI46_07450 -1.2 -1.5 Lrp/AsnC family transcriptional regulator compare
IAI46_23630 -1.2 -1.4 PTS lactose/cellobiose transporter subunit IIA compare
IAI46_11930 -1.2 -1.5 AprI/Inh family metalloprotease inhibitor compare
IAI46_17450 -1.2 -2.6 transcriptional regulator RcsB compare
IAI46_24690 -1.2 -5.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
IAI46_14170 -1.2 -1.6 DUF1937 family protein compare
IAI46_02940 -1.2 -5.7 phosphoserine phosphatase compare
IAI46_08615 -1.2 -1.9 formate transporter FocA compare
IAI46_16165 -1.2 -1.6 3-oxoadipyl-CoA thiolase compare
IAI46_18090 -1.1 -2.3 cytochrome c maturation protein CcmE compare
IAI46_21375 -1.1 -3.2 SprT family zinc-dependent metalloprotease compare
IAI46_20900 -1.1 -5.1 phosphoglycerate dehydrogenase compare
IAI46_14850 -1.1 -2.7 DUF2627 domain-containing protein compare
IAI46_25110 -1.1 -3.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI46_19600 -1.1 -3.8 ATP-dependent RNA helicase SrmB compare
IAI46_08640 -1.1 -5.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
IAI46_08635 -1.1 -4.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI46_10285 -1.1 -1.3 peptide chain release factor N(5)-glutamine methyltransferase compare
IAI46_02875 -1.1 -4.8 peptide chain release factor 3 compare
IAI46_03985 -1.1 -5.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI46_18025 -1.1 -4.2 chorismate synthase compare
IAI46_16945 -1.0 -2.4 DNA oxidative demethylase AlkB compare
IAI46_18865 -1.0 -1.4 E3 ubiquitin--protein ligase compare
IAI46_05010 -1.0 -2.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
IAI46_12725 -1.0 -1.2 TetR/AcrR family transcriptional regulator compare
IAI46_09830 -1.0 -4.5 PTS glucose transporter subunit IIBC compare
IAI46_14465 -1.0 -1.6 hypothetical protein compare
IAI46_17000 -1.0 -1.1 citrate lyase acyl carrier protein compare
IAI46_24150 -1.0 -1.6 inorganic phosphate transporter PitA compare
IAI46_08430 -1.0 -2.3 heavy metal-binding domain-containing protein compare
IAI46_14520 -1.0 -2.3 septum site-determining protein MinD compare
IAI46_20705 -1.0 -1.9 tRNA-Gly compare
IAI46_24960 -1.0 -4.4 nitrogen regulation protein NR(I) compare
IAI46_24535 -1.0 -4.7 bifunctional aspartate kinase/homoserine dehydrogenase II compare
IAI46_18425 -1.0 -1.8 DUF3820 family protein compare
IAI46_19260 -1.0 -4.1 outer membrane protein assembly factor BamB compare
IAI46_09375 -1.0 -1.6 TraR/DksA family transcriptional regulator compare
IAI46_03080 -0.9 -2.6 molecular chaperone DnaJ compare
IAI46_09575 -0.9 -1.7 hypothetical protein compare
IAI46_24905 -0.9 -4.4 ATP-dependent DNA helicase RecG compare
IAI46_01960 -0.9 -5.2 lipoprotein NlpI compare
IAI46_05500 -0.9 -1.1 fimbrial protein compare
IAI46_19570 -0.9 -3.1 SoxR-reducing system protein RseC compare
IAI46_23505 -0.9 -2.6 peptidylprolyl isomerase compare
IAI46_08130 -0.9 -1.6 ABC transporter ATP-binding protein compare
IAI46_03695 -0.9 -4.5 phosphoadenylyl-sulfate reductase compare
IAI46_07745 -0.9 -2.3 molecular chaperone compare
IAI46_24965 -0.9 -2.3 YshB family small membrane protein compare
IAI46_06015 -0.8 -1.8 PhoH family protein compare
IAI46_19345 -0.8 -2.2 iron-sulfur cluster assembly protein IscA compare
IAI46_07290 -0.8 -2.0 NUDIX hydrolase compare
IAI46_05175 -0.8 -1.3 50S ribosomal protein L36 compare
IAI46_17110 -0.8 -2.0 ABC transporter substrate-binding protein compare
IAI46_12810 -0.8 -2.2 LysR family transcriptional regulator compare
IAI46_16420 -0.8 -1.6 DMT family transporter compare
IAI46_01520 -0.8 -0.9 entericidin A/B family lipoprotein compare
IAI46_17115 -0.8 -2.4 DUF496 family protein compare
IAI46_11485 -0.8 -1.9 electron transport complex subunit RsxB compare
IAI46_05335 -0.8 -2.8 co-chaperone YbbN compare
IAI46_06585 -0.8 -2.2 molybdopterin synthase catalytic subunit MoaE compare
IAI46_18745 -0.8 -4.0 M15 family metallopeptidase compare
IAI46_13175 -0.8 -1.9 flagellar brake protein compare
IAI46_03190 -0.8 -4.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI46_09300 -0.8 -1.8 AlpA family phage regulatory protein compare
IAI46_11080 -0.8 -1.9 ABC transporter substrate-binding protein compare
IAI46_03195 -0.8 -5.9 carbamoyl-phosphate synthase large subunit compare
IAI46_15835 -0.7 -2.2 flagellar hook-basal body complex protein FliE compare
IAI46_01970 -0.7 -2.3 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI46_13935 -0.7 -1.2 LapA family protein compare
IAI46_25160 -0.7 -1.7 F0F1 ATP synthase subunit epsilon compare
IAI46_17550 -0.7 -3.0 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
IAI46_06450 -0.7 -2.3 molybdenum-dependent transcriptional regulator compare
IAI46_10795 -0.7 -1.8 RNA chaperone ProQ compare
IAI46_16065 -0.7 -1.3 transcription modulator YdgT compare
IAI46_24695 -0.7 -2.9 protein-export chaperone SecB compare
IAI46_19280 -0.7 -2.1 cytoskeleton protein RodZ compare
IAI46_13505 -0.7 -1.6 phage shock protein operon transcriptional activator compare
IAI46_24525 -0.7 -4.3 phosphoenolpyruvate carboxylase compare
IAI46_05780 -0.7 -2.0 fumarylacetoacetate hydrolase family protein compare
IAI46_15990 -0.7 -1.6 flagellar protein FlhE compare
IAI46_10945 -0.7 -2.1 hypothetical protein compare
IAI46_19870 -0.7 -2.3 DUF4440 domain-containing protein compare
IAI46_04955 -0.7 -2.0 YajQ family cyclic di-GMP-binding protein compare
IAI46_06575 -0.7 -1.9 cyclic pyranopterin monophosphate synthase MoaC compare
IAI46_11135 -0.7 -2.1 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
IAI46_12410 -0.7 -0.9 SDR family NAD(P)-dependent oxidoreductase compare
IAI46_18630 -0.7 -1.3 transketolase compare
IAI46_07090 -0.7 -2.3 acetyltransferase compare
IAI46_19175 -0.7 -1.9 enoyl-CoA hydratase/isomerase family protein compare
IAI46_08325 -0.7 -2.2 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase compare
IAI46_17840 -0.7 -3.0 tRNA pseudouridine(38-40) synthase TruA compare
IAI46_19990 -0.7 -1.3 transcriptional repressor MprA compare
IAI46_12235 -0.6 -2.0 sigma 54-interacting transcriptional regulator compare
IAI46_22855 -0.6 -1.4 DUF1471 domain-containing protein compare
IAI46_00015 -0.6 -3.8 DNA replication/repair protein RecF compare
IAI46_07125 -0.6 -0.8 SDR family oxidoreductase compare
IAI46_25010 -0.6 -4.3 molybdenum cofactor guanylyltransferase MobA compare
IAI46_06375 -0.6 -0.9 tRNA-Lys compare
IAI46_12585 -0.6 -1.5 hypothetical protein compare
IAI46_08805 -0.6 -2.3 quinone-dependent dihydroorotate dehydrogenase compare
IAI46_11580 -0.6 -1.7 DeoR/GlpR transcriptional regulator compare
IAI46_14555 -0.6 -0.9 RidA family protein compare
IAI46_11100 -0.6 -1.5 glutathione peroxidase compare
IAI46_20270 -0.6 -0.8 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI46_16340 -0.6 -2.5 AAA family ATPase compare
IAI46_03600 -0.6 -5.0 GTP diphosphokinase compare
IAI46_20455 -0.6 -1.0 RNA pyrophosphohydrolase compare
IAI46_03235 -0.6 -1.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI46_10885 -0.6 -1.6 manganese/iron ABC transporter ATP-binding protein compare
IAI46_23655 -0.6 -5.1 nitrite reductase large subunit compare
IAI46_23700 -0.6 -2.1 3-dehydroquinate synthase compare
IAI46_17845 -0.6 -1.6 aspartate-semialdehyde dehydrogenase compare
IAI46_13975 -0.6 -1.3 YciN family protein compare
IAI46_11980 -0.6 -1.5 helix-turn-helix transcriptional regulator compare
IAI46_14495 -0.6 -1.8 CsbD family protein compare
IAI46_10550 -0.6 -2.5 HTH-type transcriptional regulator PuuR compare
IAI46_06965 -0.6 -1.6 ABC transporter ATP-binding protein compare
IAI46_01200 -0.6 -0.9 tRNA-Thr compare
IAI46_16350 -0.6 -1.1 1,2-phenylacetyl-CoA epoxidase subunit A compare
IAI46_16700 -0.6 -2.5 ABC transporter permease compare
IAI46_09205 -0.6 -3.0 UvrY/SirA/GacA family response regulator transcription factor compare
IAI46_01535 -0.6 -2.2 fumarate reductase subunit FrdD compare
IAI46_07070 -0.6 -1.5 TetR/AcrR family transcriptional regulator compare
IAI46_22480 -0.6 -0.9 PTS IIA-like nitrogen regulatory protein PtsN compare
IAI46_11265 -0.6 -1.0 ribonuclease T compare
IAI46_15375 -0.6 -1.9 alpha/beta hydrolase compare
IAI46_11855 -0.6 -1.3 sulfite exporter TauE/SafE family protein compare
IAI46_10585 -0.6 -1.9 hypothetical protein compare
IAI46_13310 -0.6 -1.2 carboxypeptidase M32 compare
IAI46_12210 -0.6 -1.3 TIGR00645 family protein compare
IAI46_12160 -0.6 -2.3 hypothetical protein compare
IAI46_08455 -0.6 -1.0 DUF1294 domain-containing protein compare
IAI46_05885 -0.6 -2.1 fluoride efflux transporter CrcB compare
IAI46_18120 -0.6 -1.9 tRNA-Arg compare
IAI46_11870 -0.6 -2.1 FAD-dependent urate hydroxylase HpxO compare
IAI46_16085 -0.6 -1.9 LysR family transcriptional regulator compare
IAI46_10730 -0.6 -1.4 hypothetical protein compare
IAI46_04745 -0.6 -2.0 carbohydrate kinase family protein compare
IAI46_06795 -0.6 -2.0 LysE family transporter compare
IAI46_11340 -0.6 -1.5 transcriptional regulator SlyA compare
IAI46_24970 -0.6 -4.5 oxygen-independent coproporphyrinogen III oxidase compare
IAI46_20035 -0.6 -2.0 YfiM family lipoprotein compare
IAI46_14540 -0.6 -1.1 Slp family lipoprotein compare
IAI46_09825 -0.5 -2.4 metal-dependent hydrolase compare
IAI46_07980 -0.5 -0.8 dCTP deaminase compare
IAI46_15525 -0.5 -4.0 nitrate reductase subunit alpha compare
IAI46_18445 -0.5 -2.1 cysteine synthase A compare
IAI46_01400 -0.5 -2.5 DUF485 domain-containing protein compare
IAI46_24845 -0.5 -3.3 orotate phosphoribosyltransferase compare


Specific Phenotypes

None in this experiment

For Serratia liquefaciens MT49 in stress experiments

For stress Potassium dichromate across organisms