Experiment set1IT079 for Serratia liquefaciens MT49

Compare to:

Potassium dichromate 20 uM, anaerobic

200 most detrimental genes:

  gene name fitness t score description  
IAI46_24465 +1.2 4.6 HTH-type transcriptional repressor FabR compare
IAI46_01120 +1.2 6.0 NAD(P)H-flavin reductase compare
IAI46_12310 +1.0 2.5 alcohol dehydrogenase AdhP compare
IAI46_05905 +1.0 2.3 lipoyl(octanoyl) transferase LipB compare
IAI46_17700 +0.9 4.4 NADH-quinone oxidoreductase subunit C/D compare
IAI46_18550 +0.9 1.5 YaiI/YqxD family protein compare
IAI46_09355 +0.9 1.1 hypothetical protein compare
IAI46_23205 +0.9 1.7 5S ribosomal RNA compare
IAI46_10445 +0.9 2.0 NUDIX hydrolase compare
IAI46_14005 +0.8 4.2 hypothetical protein compare
IAI46_15315 +0.8 2.0 succinylglutamate desuccinylase compare
IAI46_09360 +0.8 2.9 Pyocin large subunit compare
IAI46_05020 +0.8 5.7 endopeptidase La compare
IAI46_17990 +0.7 2.0 hypothetical protein compare
IAI46_02445 +0.7 2.4 hypothetical protein compare
IAI46_11400 +0.7 1.5 DUF3811 domain-containing protein compare
IAI46_14560 +0.7 1.8 multidrug/spermidine efflux SMR transporter subunit MdtI compare
IAI46_14880 +0.7 1.9 fosfomycin resistance glutathione transferase compare
IAI46_00700 +0.7 5.0 class I adenylate cyclase compare
IAI46_04965 +0.7 4.0 protoheme IX farnesyltransferase compare
IAI46_07435 +0.7 1.7 carboxymuconolactone decarboxylase family protein compare
IAI46_14600 +0.7 4.7 murein DD-endopeptidase MepM compare
IAI46_04980 +0.7 5.4 cytochrome o ubiquinol oxidase subunit I compare
IAI46_14385 +0.7 1.5 GNAT family N-acetyltransferase compare
IAI46_10625 +0.7 1.7 HutD family protein compare
IAI46_13335 +0.7 2.3 FMN-dependent NADH-azoreductase compare
IAI46_04985 +0.7 3.9 cytochrome o ubiquinol oxidase subunit II compare
IAI46_10935 +0.7 1.2 hypothetical protein compare
IAI46_11235 +0.7 1.8 LysR family transcriptional regulator compare
IAI46_08930 +0.6 2.3 acyltransferase family protein compare
IAI46_10655 +0.6 1.4 hydrolase compare
IAI46_12305 +0.6 1.5 hypothetical protein compare
IAI46_03890 +0.6 2.7 DedA family protein compare
IAI46_11890 +0.6 2.4 c-type cytochrome compare
IAI46_01910 +0.6 0.7 preprotein translocase subunit SecG compare
IAI46_20515 +0.6 2.0 helix-turn-helix transcriptional regulator compare
IAI46_12765 +0.6 2.6 cytochrome c compare
IAI46_07625 +0.6 1.9 hypothetical protein compare
IAI46_09895 +0.6 2.4 thiamine kinase compare
IAI46_15115 +0.6 2.4 hypothetical protein compare
IAI46_22260 +0.6 1.5 phage holin family protein compare
IAI46_12615 +0.6 1.6 hypothetical protein compare
IAI46_05760 +0.6 1.8 RidA family protein compare
IAI46_17885 +0.6 2.0 tripartite tricarboxylate transporter TctB family protein compare
IAI46_18900 +0.6 2.6 phosphate ABC transporter ATP-binding protein compare
IAI46_11475 +0.6 1.8 helix-turn-helix domain-containing protein compare
IAI46_06295 +0.6 3.7 cytochrome ubiquinol oxidase subunit I compare
IAI46_15220 +0.6 2.2 hypothetical protein compare
IAI46_24700 +0.6 2.0 glutaredoxin 3 compare
IAI46_15335 +0.6 2.6 aspartate aminotransferase family protein compare
IAI46_13710 +0.6 2.6 hypothetical protein compare
IAI46_04975 +0.6 2.8 cytochrome o ubiquinol oxidase subunit III compare
IAI46_18720 +0.6 3.0 GNAT family N-acetyltransferase compare
IAI46_12980 +0.6 2.7 ABC-F family ATP-binding cassette domain-containing protein compare
IAI46_12660 +0.6 1.5 NAD(P)H-dependent oxidoreductase compare
IAI46_11775 +0.6 1.8 ROK family transcriptional regulator compare
IAI46_01780 +0.6 2.3 gamma-glutamylcyclotransferase compare
IAI46_15950 +0.6 1.7 flagellar hook assembly protein FlgD compare
IAI46_06610 +0.6 2.4 secretion protein HlyD compare
IAI46_18125 +0.6 2.3 DUF2058 domain-containing protein compare
IAI46_13030 +0.6 2.4 elongation factor G compare
IAI46_02385 +0.6 1.5 hypothetical protein compare
IAI46_11185 +0.6 1.4 pyruvate kinase PykF compare
IAI46_11320 +0.6 1.5 superoxide dismutase family protein compare
IAI46_09095 +0.6 1.7 antibiotic biosynthesis monooxygenase compare
IAI46_06300 +0.5 2.9 cytochrome d ubiquinol oxidase subunit II compare
IAI46_07875 +0.5 0.8 hypothetical protein compare
IAI46_11810 +0.5 1.5 isochorismatase family protein compare
IAI46_15295 +0.5 1.2 hypothetical protein compare
IAI46_19160 +0.5 2.2 lipoprotein compare
IAI46_10820 +0.5 2.3 DNA-binding transcriptional regulator KdgR compare
IAI46_09635 +0.5 1.6 helix-turn-helix transcriptional regulator compare
IAI46_11295 +0.5 1.9 NAD(P)-dependent oxidoreductase compare
IAI46_17490 +0.5 3.1 SDR family oxidoreductase compare
IAI46_12320 +0.5 1.9 sigma-54-dependent Fis family transcriptional regulator compare
IAI46_07680 +0.5 2.0 response regulator transcription factor compare
IAI46_16120 +0.5 3.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
IAI46_12240 +0.5 2.1 Gfo/Idh/MocA family oxidoreductase compare
IAI46_18515 +0.5 3.1 Dyp-type peroxidase compare
IAI46_09135 +0.5 2.2 Ldh family oxidoreductase compare
IAI46_11010 +0.5 1.7 vitamin B12 ABC transporter ATP-binding protein BtuD compare
IAI46_12665 +0.5 1.4 aldehyde dehydrogenase family protein compare
IAI46_02590 +0.5 3.1 hypothetical protein compare
IAI46_09165 +0.5 2.1 FAD-dependent oxidoreductase compare
IAI46_05935 +0.5 1.6 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
IAI46_19740 +0.5 1.8 DEAD/DEAH box helicase family protein compare
IAI46_16050 +0.5 2.6 flagellar motor stator protein MotA compare
IAI46_15005 +0.5 1.7 hypothetical protein compare
IAI46_23915 +0.5 2.2 glycerol-3-phosphate dehydrogenase compare
IAI46_10450 +0.5 1.6 hypothetical protein compare
IAI46_12330 +0.5 1.1 GNAT family N-acetyltransferase compare
IAI46_15955 +0.5 1.9 flagellar basal body rod protein FlgC compare
IAI46_10500 +0.5 1.8 hypothetical protein compare
IAI46_03025 +0.5 1.8 thr operon leader peptide compare
IAI46_15250 +0.5 0.9 hypothetical protein compare
IAI46_08810 +0.5 1.7 cell division protein ZapC compare
IAI46_14310 +0.5 1.7 tRNA 2-selenouridine(34) synthase MnmH compare
IAI46_13715 +0.5 1.6 antitermination protein compare
IAI46_12610 +0.5 1.3 alpha/beta hydrolase compare
IAI46_13180 +0.5 1.8 N-formylglutamate amidohydrolase compare
IAI46_13500 +0.5 1.4 phage shock protein PspA compare
IAI46_21630 +0.5 2.4 SMI1/KNR4 family protein compare
IAI46_24255 +0.5 3.4 response regulator compare
IAI46_03340 +0.5 1.5 3-isopropylmalate dehydratase small subunit compare
IAI46_08495 +0.5 1.7 macrolide transporter subunit MacA compare
IAI46_16325 +0.5 1.4 hypothetical protein compare
IAI46_19180 +0.5 1.2 helix-turn-helix transcriptional regulator compare
IAI46_12195 +0.5 0.8 CopG family transcriptional regulator compare
IAI46_05835 +0.5 1.9 VOC family protein compare
IAI46_11680 +0.5 1.4 LysR family transcriptional regulator compare
IAI46_00570 +0.5 2.2 exopolyphosphatase compare
IAI46_10895 +0.5 1.4 type V toxin-antitoxin system endoribonuclease antitoxin GhoS compare
IAI46_09880 +0.5 1.9 purine nucleoside phosphoramidase compare
IAI46_18170 +0.5 1.6 membrane protein YpdK compare
IAI46_21570 +0.4 2.8 helix-turn-helix transcriptional regulator compare
IAI46_01885 +0.4 2.3 ribosome assembly RNA-binding protein YhbY compare
IAI46_16110 +0.4 1.5 acetaldehyde dehydrogenase (acetylating) compare
IAI46_16570 +0.4 2.2 YtfJ family protein compare
IAI46_19120 +0.4 1.1 TIM barrel protein compare
IAI46_00685 +0.4 3.1 uroporphyrinogen-III C-methyltransferase compare
IAI46_03305 +0.4 0.8 thiamine ABC transporter ATP-binding protein ThiQ compare
IAI46_06650 +0.4 1.4 tRNA dihydrouridine(16) synthase DusC compare
IAI46_17235 +0.4 1.5 1-phosphofructokinase compare
IAI46_13155 +0.4 2.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
IAI46_12095 +0.4 1.3 LLM class flavin-dependent oxidoreductase compare
IAI46_22295 +0.4 2.4 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
IAI46_14295 +0.4 1.1 pyrimidine (deoxy)nucleoside triphosphate diphosphatase compare
IAI46_08360 +0.4 1.8 30S ribosomal protein S6--L-glutamate ligase compare
IAI46_07275 +0.4 2.1 FAD-dependent oxidoreductase compare
IAI46_08980 +0.4 1.8 DNA/RNA non-specific endonuclease compare
IAI46_19820 +0.4 1.3 N-acetyltransferase compare
IAI46_05870 +0.4 1.7 transcription antiterminator/RNA stability regulator CspE compare
IAI46_19315 +0.4 2.3 enhanced serine sensitivity protein SseB compare
IAI46_09565 +0.4 2.2 hypothetical protein compare
IAI46_23760 +0.4 2.3 ribosome-associated heat shock protein Hsp15 compare
IAI46_15690 +0.4 1.8 sodium-potassium/proton antiporter ChaA compare
IAI46_03885 +0.4 2.6 fructose-1-phosphate/6-phosphogluconate phosphatase compare
IAI46_05695 +0.4 1.6 toxin compare
IAI46_22865 +0.4 2.7 3-oxoacyl-ACP reductase FabG compare
IAI46_18870 +0.4 1.9 GlsB/YeaQ/YmgE family stress response membrane protein compare
IAI46_11325 +0.4 2.6 FUSC family protein compare
IAI46_03970 +0.4 1.2 pheA operon leader peptide PheL compare
IAI46_16960 +0.4 2.2 DUF86 domain-containing protein compare
IAI46_14010 +0.4 1.4 threonylcarbamoyl-AMP synthase compare
IAI46_15090 +0.4 1.5 hypothetical protein compare
IAI46_16410 +0.4 1.8 phenylacetic acid degradation protein PaaY compare
IAI46_03475 +0.4 1.9 DUF721 domain-containing protein compare
IAI46_06695 +0.4 2.1 fimbrial protein compare
IAI46_12630 +0.4 1.8 D-serine transporter DsdX compare
IAI46_24315 +0.4 1.1 4-oxalocrotonate tautomerase family protein compare
IAI46_19225 +0.4 2.2 MFS transporter compare
IAI46_04970 +0.4 1.2 cytochrome o ubiquinol oxidase subunit IV compare
IAI46_18810 +0.4 1.4 TOBE domain-containing protein compare
IAI46_08045 +0.4 0.8 hypothetical protein compare
IAI46_09110 +0.4 2.0 5-aminolevulinate synthase compare
IAI46_05035 +0.4 1.4 helix-hairpin-helix domain-containing protein compare
IAI46_17685 +0.4 2.2 NADH-quinone oxidoreductase subunit NuoG compare
IAI46_00555 +0.4 3.1 insulinase family protein compare
IAI46_18420 +0.4 2.5 bile acid:sodium symporter compare
IAI46_15285 +0.4 1.5 DUF5405 family protein compare
IAI46_05745 +0.4 0.8 gamma-glutamylcyclotransferase compare
IAI46_19735 +0.4 1.1 histidine kinase compare
IAI46_19745 +0.4 1.9 hypothetical protein compare
IAI46_09315 +0.4 1.7 DNA methyltransferase compare
IAI46_09805 +0.4 1.1 aminodeoxychorismate lyase compare
IAI46_05320 +0.4 1.7 NfeD family protein compare
IAI46_13480 +0.4 2.0 YcjX family protein compare
IAI46_12275 +0.4 1.7 ABC transporter permease subunit compare
IAI46_14650 +0.4 0.8 zinc ribbon domain-containing protein compare
IAI46_20700 +0.4 1.9 hypothetical protein compare
IAI46_11760 +0.4 1.3 carbohydrate ABC transporter permease compare
IAI46_11465 +0.4 1.0 electron transport complex subunit RsxG compare
IAI46_15830 +0.4 1.2 Tn3 family transposase compare
IAI46_19780 +0.4 1.6 DUF3302 domain-containing protein compare
IAI46_09370 +0.4 1.7 hypothetical protein compare
IAI46_13045 +0.4 1.5 NAD-dependent succinate-semialdehyde dehydrogenase compare
IAI46_16865 +0.4 1.4 sugar glycosyltransferase compare
IAI46_09400 +0.4 1.2 hypothetical protein compare
IAI46_16135 +0.4 2.1 aminopeptidase P family protein compare
IAI46_12285 +0.4 1.0 Lrp/AsnC family transcriptional regulator compare
IAI46_05720 +0.4 1.3 DoxX family protein compare
IAI46_14145 +0.4 1.5 cardiolipin synthase compare
IAI46_19750 +0.4 1.8 MBL fold metallo-hydrolase compare
IAI46_08510 +0.4 1.7 ATP-dependent Clp protease adapter ClpS compare
IAI46_14840 +0.4 1.5 peptidoglycan editing factor PgeF compare
IAI46_06660 +0.4 1.1 winged helix-turn-helix domain-containing protein compare
IAI46_12785 +0.4 1.2 MFS transporter compare
IAI46_11700 +0.4 2.1 MFS transporter compare
IAI46_07190 +0.4 2.3 FAD/NAD(P)-binding protein compare
IAI46_22535 +0.4 1.8 DUF4311 domain-containing protein compare
IAI46_16080 +0.4 1.4 pyroglutamyl-peptidase I compare
IAI46_20955 +0.4 1.5 YhcH/YjgK/YiaL family protein compare
IAI46_09425 +0.4 1.4 hypothetical protein compare
IAI46_16220 +0.4 2.5 magnesium-translocating P-type ATPase compare
IAI46_18510 +0.4 2.6 sulfate ABC transporter substrate-binding protein compare
IAI46_24625 +0.4 1.2 DUF805 domain-containing protein compare
IAI46_09800 +0.4 1.5 beta-ketoacyl-ACP synthase II compare
IAI46_14195 +0.4 1.2 oligopeptide ABC transporter permease OppC compare
IAI46_20285 +0.4 1.5 flavodoxin compare
IAI46_02700 +0.4 2.2 DUF3156 family protein compare


Specific Phenotypes

None in this experiment

For Serratia liquefaciens MT49 in stress experiments

For stress Potassium dichromate across organisms