Experiment set1IT078 for Rhizobium sp. OAE497

Compare to:

Carnitine Hydrochloride carbon source

200 most detrimental genes:

  gene name fitness t score description  
ABIE40_RS29455 +1.3 4.6 dienelactone hydrolase family protein compare
ABIE40_RS13835 +1.3 2.1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
ABIE40_RS30825 +1.2 2.0 cytochrome c oxidase subunit II compare
ABIE40_RS29115 +1.1 1.8 DUF3606 domain-containing protein compare
ABIE40_RS29835 +1.1 1.6 transposase compare
ABIE40_RS08015 +1.1 2.4 type II toxin-antitoxin system PemK/MazF family toxin compare
ABIE40_RS14650 +1.1 2.4 urea ABC transporter ATP-binding protein UrtD compare
ABIE40_RS27440 +1.0 2.2 DUF4112 domain-containing protein compare
ABIE40_RS27215 +1.0 1.5 3'-5' exonuclease compare
ABIE40_RS12230 +1.0 1.5 carboxymuconolactone decarboxylase family protein compare
ABIE40_RS27900 +1.0 2.6 S4 domain-containing protein compare
ABIE40_RS26185 +1.0 3.0 pseudoazurin compare
ABIE40_RS13195 +0.9 1.5 metalloregulator ArsR/SmtB family transcription factor compare
ABIE40_RS05200 +0.9 1.7 hypothetical protein compare
ABIE40_RS21975 +0.9 2.8 LysR substrate-binding domain-containing protein compare
ABIE40_RS18680 +0.9 0.9 hypothetical protein compare
ABIE40_RS10280 +0.9 1.6 hypothetical protein compare
ABIE40_RS30895 +0.9 0.7 cytochrome o ubiquinol oxidase subunit IV compare
ABIE40_RS01945 +0.9 2.4 calcium-binding protein compare
ABIE40_RS30450 +0.8 2.0 DUF3606 domain-containing protein compare
ABIE40_RS06055 +0.8 1.8 DUF3563 family protein compare
ABIE40_RS08510 +0.8 3.0 Mth938-like domain-containing protein compare
ABIE40_RS17600 +0.8 2.1 class I SAM-dependent methyltransferase compare
ABIE40_RS17265 +0.8 2.7 hypothetical protein compare
ABIE40_RS05395 +0.8 3.0 hypothetical protein compare
ABIE40_RS30455 +0.8 1.3 hypothetical protein compare
ABIE40_RS17800 +0.8 2.2 arginase compare
ABIE40_RS17270 +0.8 2.7 S1C family serine protease compare
ABIE40_RS03315 +0.8 1.7 DUF4174 domain-containing protein compare
ABIE40_RS07990 +0.8 2.2 DUF2809 domain-containing protein compare
ABIE40_RS20585 +0.8 1.0 ANTAR domain-containing protein compare
ABIE40_RS05180 +0.8 4.7 TetR/AcrR family transcriptional regulator compare
ABIE40_RS29170 +0.8 1.9 type II toxin-antitoxin system RelE/ParE family toxin compare
ABIE40_RS20645 +0.8 1.4 GntR family transcriptional regulator compare
ABIE40_RS23075 +0.8 1.1 RT0821/Lpp0805 family surface protein compare
ABIE40_RS07520 +0.7 3.4 metalloregulator ArsR/SmtB family transcription factor compare
ABIE40_RS27335 +0.7 1.9 hypothetical protein compare
ABIE40_RS18210 +0.7 0.9 sigma-70 family RNA polymerase sigma factor compare
ABIE40_RS11750 +0.7 3.3 chemotaxis protein CheW compare
ABIE40_RS24760 +0.7 1.6 DeoR/GlpR family DNA-binding transcription regulator compare
ABIE40_RS04975 +0.7 1.7 AAA family ATPase compare
ABIE40_RS20655 +0.7 2.2 substrate-binding domain-containing protein compare
ABIE40_RS03300 +0.7 1.8 phasin compare
ABIE40_RS17365 +0.7 2.2 Flp family type IVb pilin compare
ABIE40_RS28045 +0.7 0.5 hypothetical protein compare
ABIE40_RS26005 +0.7 2.7 hypothetical protein compare
ABIE40_RS03685 +0.7 1.0 hypothetical protein compare
ABIE40_RS16890 +0.7 2.4 LysR family transcriptional regulator compare
ABIE40_RS07265 +0.7 3.6 methylmalonyl-CoA epimerase compare
ABIE40_RS26150 +0.7 1.0 hypothetical protein compare
ABIE40_RS17200 +0.7 2.7 endonuclease/exonuclease/phosphatase family protein compare
ABIE40_RS05025 +0.7 1.5 MucR family transcriptional regulator compare
ABIE40_RS27510 +0.7 2.6 hypothetical protein compare
ABIE40_RS09930 +0.7 3.1 copper chaperone PCu(A)C compare
ABIE40_RS01530 +0.7 2.2 LysR family transcriptional regulator compare
ABIE40_RS07820 +0.7 4.8 type II toxin-antitoxin system RelE/ParE family toxin compare
ABIE40_RS22770 +0.6 1.4 hypothetical protein compare
ABIE40_RS29650 +0.6 1.8 SDR family oxidoreductase compare
ABIE40_RS27350 +0.6 2.4 hypothetical protein compare
ABIE40_RS20315 +0.6 0.9 type II toxin-antitoxin system VapB family antitoxin compare
ABIE40_RS00070 +0.6 3.6 sugar phosphate isomerase/epimerase family protein compare
ABIE40_RS06440 +0.6 2.4 Gfo/Idh/MocA family oxidoreductase compare
ABIE40_RS02925 +0.6 0.8 hypothetical protein compare
ABIE40_RS27930 +0.6 0.7 nuclear transport factor 2 family protein compare
ABIE40_RS07675 +0.6 2.3 hypothetical protein compare
ABIE40_RS30060 +0.6 1.6 hypothetical protein compare
ABIE40_RS05595 +0.6 1.3 DUF3168 domain-containing protein compare
ABIE40_RS03640 +0.6 1.5 BrnT family toxin compare
ABIE40_RS01245 +0.6 1.4 2'-5' RNA ligase family protein compare
ABIE40_RS26820 +0.6 1.3 DUF982 domain-containing protein compare
ABIE40_RS11935 +0.6 1.2 class I SAM-dependent methyltransferase compare
ABIE40_RS20260 +0.6 1.1 cytochrome b compare
ABIE40_RS24675 +0.6 1.5 phosphogluconate dehydrogenase C-terminal domain-containing protein compare
ABIE40_RS08270 +0.6 3.4 GNAT family N-acetyltransferase compare
ABIE40_RS19970 +0.6 1.9 L-rhamnose mutarotase compare
ABIE40_RS05585 +0.6 2.0 head-tail connector protein compare
ABIE40_RS29155 +0.6 0.9 transport-associated protein compare
ABIE40_RS11730 +0.6 2.2 50S ribosomal protein L11 methyltransferase compare
ABIE40_RS25010 +0.6 2.8 hypothetical protein compare
ABIE40_RS17075 +0.6 2.3 L-arabinose ABC transporter permease AraH compare
ABIE40_RS28120 +0.6 1.0 MFS transporter compare
ABIE40_RS14415 +0.6 0.8 hemin uptake protein HemP compare
ABIE40_RS15415 +0.6 2.0 tripartite tricarboxylate transporter TctB family protein compare
ABIE40_RS29850 +0.6 1.1 IS110 family transposase compare
ABIE40_RS00050 +0.6 3.6 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS01790 +0.6 1.0 type II toxin-antitoxin system RelB/DinJ family antitoxin compare
ABIE40_RS01545 +0.6 2.4 SRPBCC domain-containing protein compare
ABIE40_RS08025 +0.6 1.2 YkvA family protein compare
ABIE40_RS24245 +0.6 1.2 helix-turn-helix domain-containing protein compare
ABIE40_RS05800 +0.6 1.8 Lrp/AsnC family transcriptional regulator compare
ABIE40_RS09120 +0.6 2.2 hypothetical protein compare
ABIE40_RS12075 +0.6 2.5 ABC transporter ATP-binding protein compare
ABIE40_RS26890 +0.5 0.8 DUF983 domain-containing protein compare
ABIE40_RS15130 +0.5 3.2 phosphodiesterase compare
ABIE40_RS16545 +0.5 2.1 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS23605 +0.5 1.7 hypothetical protein compare
ABIE40_RS14635 +0.5 0.9 urease subunit gamma compare
ABIE40_RS24015 +0.5 2.2 ABC transporter permease compare
ABIE40_RS15720 +0.5 2.1 hypothetical protein compare
ABIE40_RS06620 +0.5 1.0 HNH endonuclease signature motif containing protein compare
ABIE40_RS27255 +0.5 0.8 hypothetical protein compare
ABIE40_RS17140 +0.5 2.8 ABC transporter ATP-binding protein compare
ABIE40_RS27995 +0.5 2.1 cupin domain-containing protein compare
ABIE40_RS23055 +0.5 2.4 DUF5666 domain-containing protein compare
ABIE40_RS04885 +0.5 3.0 HIT family protein compare
ABIE40_RS27490 +0.5 0.7 hypothetical protein compare
ABIE40_RS00260 +0.5 1.9 YafY family protein compare
ABIE40_RS25745 +0.5 1.4 four-carbon acid sugar kinase family protein compare
ABIE40_RS29515 +0.5 0.5 hypothetical protein compare
ABIE40_RS14455 +0.5 1.1 NepR family anti-sigma factor compare
ABIE40_RS07405 +0.5 2.7 hypothetical protein compare
ABIE40_RS06530 +0.5 2.5 NUDIX domain-containing protein compare
ABIE40_RS07810 +0.5 2.8 phosphatase PAP2 family protein compare
ABIE40_RS10435 +0.5 1.2 N-acetyl-D-Glu racemase DgcA compare
ABIE40_RS10220 +0.5 1.6 hypothetical protein compare
ABIE40_RS20320 +0.5 1.4 sigma-70 family RNA polymerase sigma factor compare
ABIE40_RS00435 +0.5 2.2 hypothetical protein compare
ABIE40_RS30285 +0.5 0.5 co-chaperone GroES compare
ABIE40_RS22805 +0.5 1.3 ATP-binding cassette domain-containing protein compare
ABIE40_RS09630 +0.5 1.4 antitoxin MazE family protein compare
ABIE40_RS22150 +0.5 1.4 hypothetical protein compare
ABIE40_RS06520 +0.5 2.8 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ compare
ABIE40_RS29260 +0.5 1.5 SDR family NAD(P)-dependent oxidoreductase compare
ABIE40_RS03030 +0.5 2.5 flagellin compare
ABIE40_RS27910 +0.5 2.4 GlxA family transcriptional regulator compare
ABIE40_RS26505 +0.5 2.2 trehalase-like domain-containing protein compare
ABIE40_RS17100 +0.5 2.5 isoprenylcysteine carboxylmethyltransferase family protein compare
ABIE40_RS07635 +0.5 1.4 hypothetical protein compare
ABIE40_RS14435 +0.5 1.3 heme ABC transporter ATP-binding protein compare
ABIE40_RS30050 +0.5 2.3 hypothetical protein compare
ABIE40_RS30655 +0.5 0.9 hypothetical protein compare
ABIE40_RS29195 +0.5 0.7 SOS response-associated peptidase family protein compare
ABIE40_RS30235 +0.5 2.0 cupin compare
ABIE40_RS17950 +0.5 1.0 tyrosine recombinase XerC compare
ABIE40_RS15030 +0.5 2.2 Rrf2 family transcriptional regulator compare
ABIE40_RS02980 +0.5 1.1 flagellar hook-basal body complex protein FliE compare
ABIE40_RS12295 +0.5 1.4 hypothetical protein compare
ABIE40_RS12620 +0.5 1.7 molybdopterin-binding protein compare
ABIE40_RS28065 +0.5 0.8 hypothetical protein compare
ABIE40_RS04005 +0.5 1.0 DnaJ C-terminal domain-containing protein compare
ABIE40_RS08180 +0.5 1.8 GFA family protein compare
ABIE40_RS17350 +0.5 1.4 glutaredoxin 3 compare
ABIE40_RS29530 +0.5 2.1 hypothetical protein compare
ABIE40_RS02175 +0.5 2.4 ABC transporter permease compare
ABIE40_RS08085 +0.5 2.0 LysR family transcriptional regulator compare
ABIE40_RS01770 +0.5 1.8 hypothetical protein compare
ABIE40_RS08290 +0.5 1.7 ChrR family anti-sigma-E factor compare
ABIE40_RS27475 +0.5 0.7 PRC-barrel domain-containing protein compare
ABIE40_RS15460 +0.5 2.5 response regulator compare
ABIE40_RS00130 +0.5 3.4 glucuronate isomerase compare
ABIE40_RS13115 +0.5 1.1 adenine phosphoribosyltransferase compare
ABIE40_RS28875 +0.4 1.0 hypothetical protein compare
ABIE40_RS27015 +0.4 0.6 ATP-dependent DNA ligase compare
ABIE40_RS03600 +0.4 1.8 HAD family hydrolase compare
ABIE40_RS05650 +0.4 2.3 hypothetical protein compare
ABIE40_RS29640 +0.4 2.3 dihydroorotase family protein compare
ABIE40_RS28020 +0.4 1.3 hypothetical protein compare
ABIE40_RS22795 +0.4 1.4 ABC transporter permease compare
ABIE40_RS26620 +0.4 1.2 DUF1236 domain-containing protein compare
ABIE40_RS05105 +0.4 1.0 class I SAM-dependent methyltransferase compare
ABIE40_RS24560 +0.4 1.8 ABC-F family ATP-binding cassette domain-containing protein compare
ABIE40_RS22255 +0.4 1.8 nuclear transport factor 2 family protein compare
ABIE40_RS27725 +0.4 0.8 DUF1236 domain-containing protein compare
ABIE40_RS25100 +0.4 2.0 LysR family transcriptional regulator compare
ABIE40_RS22515 +0.4 1.7 TetR/AcrR family transcriptional regulator compare
ABIE40_RS13245 +0.4 0.7 CoA pyrophosphatase compare
ABIE40_RS00080 +0.4 3.0 Gfo/Idh/MocA family oxidoreductase compare
ABIE40_RS29765 +0.4 1.4 tyrosine-type recombinase/integrase compare
ABIE40_RS03870 +0.4 1.0 metalloregulator ArsR/SmtB family transcription factor compare
ABIE40_RS10250 +0.4 1.2 cupin domain-containing protein compare
ABIE40_RS26040 +0.4 0.8 TetR/AcrR family transcriptional regulator compare
ABIE40_RS15425 +0.4 1.8 sigma-54 dependent transcriptional regulator compare
ABIE40_RS23205 +0.4 1.4 chromate transporter compare
ABIE40_RS17260 +0.4 3.4 ATP-dependent chaperone ClpB compare
ABIE40_RS08830 +0.4 1.1 zinc-finger domain-containing protein compare
ABIE40_RS15700 +0.4 1.2 SH3 domain-containing protein compare
ABIE40_RS22740 +0.4 1.8 DUF305 domain-containing protein compare
ABIE40_RS20160 +0.4 1.9 isochorismatase family cysteine hydrolase compare
ABIE40_RS22850 +0.4 2.0 hypothetical protein compare
ABIE40_RS29480 +0.4 0.8 hypothetical protein compare
ABIE40_RS01980 +0.4 2.1 anti-sigma factor compare
ABIE40_RS17325 +0.4 2.5 amidase compare
ABIE40_RS08000 +0.4 2.6 protein-methionine-sulfoxide reductase catalytic subunit MsrP compare
ABIE40_RS17310 +0.4 0.8 hypothetical protein compare
ABIE40_RS14095 +0.4 1.2 30S ribosomal protein S21 compare
ABIE40_RS19650 +0.4 1.2 3-carboxy-cis,cis-muconate cycloisomerase compare
ABIE40_RS09840 +0.4 2.6 DMT family transporter compare
ABIE40_RS15270 +0.4 2.8 sugar ABC transporter permease compare
ABIE40_RS26450 +0.4 1.5 mandelate racemase/muconate lactonizing enzyme family protein compare
ABIE40_RS27530 +0.4 0.9 hypothetical protein compare
ABIE40_RS09960 +0.4 1.5 DUF982 domain-containing protein compare
ABIE40_RS28620 +0.4 2.1 FAD-dependent oxidoreductase compare
ABIE40_RS26295 +0.4 1.4 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS29695 +0.4 1.9 HNH endonuclease compare
ABIE40_RS07410 +0.4 1.6 DUF6105 family protein compare
ABIE40_RS14745 +0.4 1.5 GNAT family N-acetyltransferase compare
ABIE40_RS18545 +0.4 1.0 acyl carrier protein compare
ABIE40_RS15265 +0.4 2.4 carbohydrate ABC transporter permease compare
ABIE40_RS27485 +0.4 1.4 response regulator compare
ABIE40_RS27870 +0.4 1.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Rhizobium sp. OAE497 in carbon source experiments

For carbon source Carnitine Hydrochloride across organisms