Experiment set1IT078 for Pseudomonas putida KT2440

Compare to:

Glucose carbon source (40mM)

200 most important genes:

  gene name fitness t score description  
PP_0293 -5.7 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3511 -5.6 -5.4 Branched-chain-amino-acid aminotransferase compare
PP_0082 -5.4 -3.8 tryptophan synthase alpha chain compare
PP_1985 -5.4 -3.7 3-isopropylmalate dehydratase large subunit compare
PP_0292 -5.4 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1088 -5.2 -10.0 Argininosuccinate synthase compare
PP_0422 -5.1 -6.1 Indole-3-glycerol phosphate synthase compare
PP_4680 -5.1 -7.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -5.1 -4.9 Acetylglutamate kinase compare
PP_4890 -5.1 -4.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_0184 -5.0 -8.3 Argininosuccinate lyase compare
PP_4678 -5.0 -11.2 Ketol-acid reductoisomerase compare
PP_0290 -5.0 -7.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2168 -4.9 -9.9 Transaldolase compare
PP_1995 -4.9 -8.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0966 -4.9 -9.3 Histidinol dehydrogenase compare
PP_4999 -4.9 -3.3 dihydroorotase-like protein compare
PP_0691 -4.8 -5.7 Glutamate 5-kinase compare
PP_5015 -4.8 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5014 -4.8 -3.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_5185 -4.7 -7.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1988 -4.7 -7.8 3-isopropylmalate dehydrogenase compare
PP_0083 -4.7 -5.6 tryptophan synthase beta chain compare
PP_0967 -4.7 -10.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0289 -4.7 -8.4 Imidazoleglycerol-phosphate dehydratase compare
PP_1079 -4.7 -6.4 Ornithine carbamoyltransferase compare
PP_0417 -4.7 -14.9 Anthranilate synthase component 1 compare
PP_0420 -4.6 -9.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0965 -4.5 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4799 -4.5 -4.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2327 -4.4 -7.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4909 -4.3 -7.2 phosphoserine phosphatase compare
PP_1986 -4.3 -3.0 3-isopropylmalate dehydratase small subunit compare
PP_5097 -4.3 -12.0 homoserine O-acetyltransferase compare
PP_4723 -4.3 -5.8 Carbamoyl-phosphate synthase large chain compare
PP_4693 -4.2 -9.8 RNA polymerase-binding transcription factor DksA compare
PP_5303 -4.2 -6.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4696 -4.1 -8.7 Nitrogen regulation protein NR(I) compare
PP_0421 -4.1 -9.4 Anthranilate phosphoribosyltransferase compare
PP_5347 -4.0 -10.6 pyruvate carboxylase subunit A compare
PP_1664 -4.0 -6.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_5346 -3.9 -9.7 pyruvate carboxylase subunit B compare
PP_5128 -3.8 -8.2 Dihydroxy-acid dehydratase compare
PP_5155 -3.8 -5.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5098 -3.7 -8.6 methionine biosynthesis protein MetW compare
PP_4679 -3.6 -6.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2001 -3.4 -10.2 O-succinylhomoserine sulfhydrylase compare
PP_2371 -3.3 -5.8 Sulphite reductase hemoprotein, beta subunit compare
PP_4700 -3.3 -5.0 pantothenate synthetase compare
PP_3999 -3.2 -5.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4724 -3.2 -4.3 Carbamoyl-phosphate synthase small chain compare
PP_2370 -3.2 -4.1 conserved protein of unknown function compare
PP_5348 -3.1 -9.1 Transcriptional regulator, LysR family compare
PP_1022 -3.0 -8.0 glucose 6-phosphate-1-dehydrogenase compare
PP_2000 -2.9 -2.8 amidophosphoribosyl transferase compare
PP_0291 -2.8 -4.0 conserved protein of unknown function compare
PP_0393 -2.7 -4.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0339 -2.6 -3.5 Pyruvate dehydrogenase E1 component compare
PP_1656 -2.6 -6.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_5095 -2.6 -2.9 pyrroline-5-carboxylate reductase compare
PP_1025 -2.5 -8.1 2-isopropylmalate synthase compare
PP_5350 -2.4 -5.5 Transcriptional regulator, RpiR family compare
PP_0760 -2.3 -2.8 conserved membrane protein of unknown function compare
PP_0164 -2.2 -8.2 conserved protein of unknown function compare
PP_1362 -2.1 -5.1 pyruvate kinase II compare
PP_4701 -2.1 -1.6 glucose-6-phosphate isomerase compare
PP_1912 -2.1 -5.4 Phosphate acyltransferase compare
PP_0218 -2.0 -9.6 Sensory box protein compare
PP_2328 -2.0 -5.2 Phosphoadenosine phosphosulfate reductase compare
PP_3790 -1.9 -7.9 diaminopimelate epimerase compare
PP_3417 -1.8 -5.8 D-gluconate transporter compare
PP_t29 -1.8 -2.8 tRNA-Ala compare
PP_0065 -1.6 -4.8 NAD-binding component of TrK potassium transporter compare
PP_4964 -1.4 -3.5 D-erythrose 4-phosphate dehydrogenase compare
PP_2402 -1.4 -2.8 putative Sensor histidine kinase compare
PP_2302 -1.4 -6.2 DNA-binding, ATP-dependent protease compare
PP_4296 -1.4 -2.0 conserved exported protein of unknown function compare
PP_4122 -1.4 -2.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5621 -1.3 -2.4 protein of unknown function compare
PP_5227 -1.3 -6.9 diaminopimelate decarboxylase compare
PP_4364 -1.3 -4.0 putative Anti-sigma F factor antagonist compare
PP_4098 -1.3 -1.8 UvrABC system protein C compare
PP_5230 -1.2 -3.6 Tyrosine recombinase XerC compare
PP_1825 -1.2 -3.8 conserved exported protein of unknown function compare
PP_4120 -1.2 -4.0 NADH-quinone oxidoreductase subunit B compare
PP_4642 -1.2 -1.5 Cyclic diguanosine monophosphate-binding protein compare
PP_4917 -1.1 -3.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3447 -1.1 -1.7 conserved membrane protein of unknown function compare
PP_5176 -1.1 -2.9 conserved protein of unknown function compare
PP_1589 -1.1 -6.4 uridylyltransferase compare
PP_1783 -1.1 -3.1 dTDP-glucose pyrophosphorylase compare
PP_1493 -1.1 -3.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1304 -1.1 -5.9 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4004 -1.1 -3.5 DNA translocase FtsK compare
PP_1629 -1.1 -5.5 Protein RecA compare
PP_5216 -1.1 -1.8 exopolyphosphatase compare
PP_5609 -1.1 -2.5 conserved protein of unknown function compare
PP_3241 -1.1 -1.3 conserved exported protein of unknown function compare
PP_5628 -1.0 -2.8 conserved protein of unknown function compare
PP_1128 -1.0 -3.0 OmpA family protein compare
PP_0377 -1.0 -1.5 coenzyme PQQ synthesis protein D compare
PP_0261 -1.0 -3.9 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1826 -1.0 -2.5 Hydrolase, isochorismatase family compare
PP_0087 -1.0 -2.6 conserved exported protein of unknown function compare
PP_2309 -1.0 -1.4 conserved protein of unknown function compare
PP_4804 -1.0 -3.0 RlpA-like lipoprotein compare
PP_0980 -1.0 -4.4 Probable cytosol aminopeptidase compare
PP_2681 -1.0 -1.8 coenzyme PQQ synthesis protein D compare
PP_1097 -1.0 -1.3 Methionine--tRNA ligase compare
PP_0673 -0.9 -1.2 conserved protein of unknown function compare
PP_2929 -0.9 -5.2 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1994 -0.9 -2.2 tRNA pseudouridine (38-40)synthase compare
PP_1237 -0.9 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2972 -0.9 -1.8 conserved protein of unknown function compare
PP_5310 -0.9 -4.3 junction-specific ATP-dependent DNA helicase compare
PP_3903 -0.9 -2.0 conserved protein of unknown function compare
PP_1310 -0.9 -1.6 conserved hypothetical protein compare
PP_1512 -0.9 -2.7 conserved protein of unknown function compare
PP_3649 -0.9 -3.2 Transcriptional regulator, GntR family compare
PP_1834 -0.9 -2.4 conserved protein of unknown function compare
PP_5329 -0.9 -2.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4424 -0.9 -1.8 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2878 -0.9 -1.7 conserved protein of unknown function compare
PP_5331 -0.9 -2.0 Long-chain acyl-CoA thioester hydrolase compare
PP_4129 -0.8 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4902 -0.8 -2.1 Oligoribonuclease compare
PP_0848 -0.8 -1.4 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1217 -0.8 -3.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4546 -0.8 -3.3 ATP-dependent helicase HrpA compare
PP_1999 -0.8 -1.9 membrane protein required for colicin V production compare
PP_4136 -0.8 -1.1 Transcriptional regulator, LuxR family compare
PP_3307 -0.8 -1.7 conserved protein of unknown function compare
PP_4379 -0.8 -2.6 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0575 -0.8 -2.6 conserved membrane protein of unknown function compare
PP_5022 -0.8 -1.6 Glutamine transport ATP-binding protein GlnQ compare
PP_0406 -0.8 -2.7 Nucleotidyltransferase family protein compare
PP_0513 -0.8 -2.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4500 -0.8 -2.5 TrpH family protein compare
PP_0127 -0.8 -2.6 Thiol:disulfide interchange protein compare
PP_1568 -0.8 -0.9 conserved protein of unknown function compare
PP_4503 -0.8 -1.1 DNA-binding response regulator compare
PP_0276 -0.8 -1.0 Transcriptional regulator, Cro/CI family compare
PP_3117 -0.8 -2.1 putative protein involved in error-prone processing of DNA lesions compare
PP_2793 -0.8 -1.3 Acyl-CoA dehydrogenase family protein compare
PP_0833 -0.8 -1.7 queuine tRNA-ribosyltransferase compare
PP_5198 -0.8 -2.6 conserved protein of unknown function compare
PP_5035 -0.8 -4.0 Histidine utilization repressor compare
PP_5309 -0.8 -3.5 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2322 -0.8 -3.0 Major outer membrane lipoprotein compare
PP_3239 -0.7 -1.8 putative cointegrate resolution protein T Tn4652 compare
PP_4952 -0.7 -1.4 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_0119 -0.7 -1.8 putative zinc uptake regulation protein ZUR compare
PP_3880 -0.7 -1.2 conserved exported protein of unknown function compare
PP_1366 -0.7 -1.2 Transcriptional regulator MvaT, P16 subunit compare
PP_0832 -0.7 -2.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4131 -0.7 -3.5 NADH-quinone oxidoreductase subunit N compare
PP_4529 -0.7 -2.0 conserved protein of unknown function compare
PP_2136 -0.7 -2.5 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4824 -0.7 -3.9 Sensor histidine kinase/response regulator compare
PP_4102 -0.7 -1.5 conserved protein of unknown function compare
PP_4695 -0.7 -4.3 Sensory box histidine kinase compare
PP_3738 -0.7 -2.1 putative Transcriptional regulator VanR compare
PP_2880 -0.7 -1.8 Transcriptional regulator, TetR family compare
PP_3443 -0.7 -4.1 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_3662 -0.7 -3.3 conserved protein of unknown function compare
PP_0809 -0.7 -4.3 disulfide bond formation protein B compare
PP_1482 -0.7 -2.5 polyamine ABC transporter, permease protein compare
PP_4699 -0.7 -2.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0123 -0.7 -4.4 DNA polymerase I, 5 compare
PP_4121 -0.7 -3.1 NADH-quinone oxidoreductase subunit C/D compare
PP_5048 -0.7 -2.9 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1548 -0.7 -1.6 conserved protein of unknown function compare
PP_4392 -0.7 -3.8 chemotaxis protein methyltransferase compare
PP_1833 -0.7 -2.2 conserved protein of unknown function compare
PP_2070 -0.7 -1.4 Transcriptional regulator, AraC family compare
PP_4690 -0.7 -2.1 Rieske 2Fe-2S family protein compare
PP_1478 -0.7 -2.9 putative Xenobiotic reductase compare
PP_3227 -0.7 -2.3 Transcriptional regulator, LysR family compare
PP_4541 -0.7 -2.7 peptidyl-prolyl cis-trans isomerase A (rotamase A) compare
PP_2345 -0.7 -2.0 conserved exported protein of unknown function compare
PP_1609 -0.6 -1.4 conserved protein of unknown function compare
PP_4018 -0.6 -1.8 Acetyltransferase, GNAT family compare
PP_1231 -0.6 -2.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5114 -0.6 -1.3 putative adenine methyltransferase compare
PP_2144 -0.6 -2.5 Transcriptional regulator, TetR family compare
PP_1654 -0.6 -1.9 cysteine synthase B compare
PP_0888 -0.6 -1.7 Photosynthetic apparatus regulatory protein RegA compare
PP_4045 -0.6 -1.2 conserved protein of unknown function compare
PP_2016 -0.6 -2.1 conserved protein of unknown function compare
PP_2441 -0.6 -1.7 conserved protein of unknown function compare
PP_1011 -0.6 -3.3 glucokinase compare
PP_3789 -0.6 -3.0 putative Efflux transporter compare
PP_3444 -0.6 -2.6 Glyoxalase family protein compare
PP_2340 -0.6 -2.1 conserved protein of unknown function compare
PP_5000 -0.6 -1.3 peptidase component of the ATP-dependent HslVU protease compare
PP_0914 -0.6 -4.1 GGDEF domain protein compare
PP_0313 -0.6 -1.5 putative electron transfer flavoprotein beta subunit compare
PP_1012 -0.6 -2.5 DNA-binding response regulator compare
PP_0834 -0.6 -0.9 Sec translocation complex subunit YajC compare
PP_5028 -0.6 -2.1 proline iminopeptidase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms