Experiment set1IT078 for Enterobacter asburiae PDN3

Compare to:

M9 with sucrose; no stress control

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_2851 -5.4 -4.9 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_4544 -4.8 -2.2 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_0534 -4.6 -9.1 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_0535 -4.6 -8.7 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_4153 -4.5 -4.1 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_1497 -4.3 -2.0 hypothetical protein compare
EX28DRAFT_0046 -4.3 -4.1 shikimate dehydrogenase compare
EX28DRAFT_3668 -4.1 -10.8 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_0538 -4.0 -9.9 histidinol-phosphate aminotransferase compare
EX28DRAFT_4446 -3.9 -9.1 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_4443 -3.8 -13.7 dihydroxy-acid dehydratase compare
EX28DRAFT_0536 -3.8 -4.3 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_2916 -3.8 -11.3 diaminopimelate decarboxylase compare
EX28DRAFT_2027 -3.7 -5.3 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_4493 -3.7 -11.0 Transcriptional regulator compare
EX28DRAFT_2701 -3.7 -11.5 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_3314 -3.6 -1.2 Factor for inversion stimulation Fis, transcriptional activator compare
EX28DRAFT_2651 -3.6 -8.6 glutamate 5-kinase compare
EX28DRAFT_2585 -3.5 -3.7 pyrroline-5-carboxylate reductase compare
EX28DRAFT_4422 -3.5 -10.8 argininosuccinate lyase compare
EX28DRAFT_3614 -3.5 -13.2 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_2548 -3.3 -7.5 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_3667 -3.3 -3.2 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_4347 -3.3 -1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0933 -3.3 -13.0 tryptophan synthase, beta subunit compare
EX28DRAFT_0533 -3.3 -7.8 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_0537 -3.2 -10.4 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_3669 -3.2 -6.6 3-isopropylmalate dehydrogenase compare
EX28DRAFT_3711 -3.2 -1.4 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_4331 -3.1 -9.5 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_0934 -3.1 -14.9 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_3046 -3.1 -9.8 cystathionine beta-lyase, bacterial compare
EX28DRAFT_4411 -3.1 -11.4 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_0932 -3.1 -5.4 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_4444 -3.0 -9.5 threonine ammonia-lyase, biosynthetic, long form compare
EX28DRAFT_2650 -3.0 -9.5 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_2699 -3.0 -7.5 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_4420 -2.9 -2.3 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_2272 -2.9 -12.4 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_4421 -2.8 -1.6 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_2846 -2.8 -6.0 adenylyl-sulfate kinase compare
EX28DRAFT_2893 -2.8 -8.0 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_3224 -2.8 -4.7 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_3646 -2.8 -7.4 4-hydroxythreonine-4-phosphate dehydrogenase compare
EX28DRAFT_2265 -2.8 -2.9 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_3710 -2.8 -7.6 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_0539 -2.8 -7.5 histidinol dehydrogenase compare
EX28DRAFT_2917 -2.8 -5.5 Transcriptional regulator compare
EX28DRAFT_3616 -2.8 -4.6 threonine synthase compare
EX28DRAFT_3670 -2.7 -7.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_0540 -2.7 -7.8 ATP phosphoribosyltransferase compare
EX28DRAFT_3671 -2.7 -3.5 RNA compare
EX28DRAFT_4419 -2.7 -2.2 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_2531 -2.6 -3.5 endopeptidase La compare
EX28DRAFT_2853 -2.6 -7.6 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_1841 -2.5 -1.3 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_0167 -2.5 -2.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_4445 -2.4 -5.5 Transcriptional regulator compare
EX28DRAFT_4418 -2.4 -8.3 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_0214 -2.4 -4.9 cysteine synthase A compare
EX28DRAFT_0935 -2.4 -8.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_0092 -2.4 -2.4 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_4478 -2.4 -5.4 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_2848 -2.3 -9.8 sulfate adenylyltransferase, small subunit compare
EX28DRAFT_4442 -2.2 -5.7 branched-chain amino acid aminotransferase, group I compare
EX28DRAFT_2852 -2.2 -9.2 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_0936 -2.2 -5.7 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_4156 -2.2 -2.7 ribulose-phosphate 3-epimerase compare
EX28DRAFT_0284 -2.1 -8.5 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_2847 -2.1 -11.4 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_0292 -2.1 -3.5 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_3461 -2.1 -5.6 ornithine carbamoyltransferase compare
EX28DRAFT_2849 -2.0 -7.7 uroporphyrin-III C-methyltransferase compare
EX28DRAFT_2252 -2.0 -2.7 TolA protein compare
EX28DRAFT_1050 -2.0 -2.1 luciferase family oxidoreductase, group 1 compare
EX28DRAFT_0111 -2.0 -2.7 FeS cluster assembly scaffold IscU compare
EX28DRAFT_3613 -1.9 -5.1 RNA compare
EX28DRAFT_0272 -1.8 -2.3 phosphohistidine phosphatase, SixA compare
EX28DRAFT_3647 -1.8 -4.6 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_3401 -1.8 -1.9 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_0228 -1.7 -1.7 tRNA compare
EX28DRAFT_1121 -1.7 -3.5 Sugar kinases, ribokinase family compare
EX28DRAFT_0769 -1.7 -1.3 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_1123 -1.7 -7.1 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_3375 -1.7 -1.5 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_2702 -1.7 -5.0 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_0494 -1.7 -1.4 Protein-tyrosine-phosphatase compare
EX28DRAFT_2043 -1.7 -7.2 transcriptional regulator, AsnC family compare
EX28DRAFT_1124 -1.6 -8.7 sucrose-6-phosphate hydrolase compare
EX28DRAFT_1382 -1.6 -1.5 transcriptional regulator, TetR family compare
EX28DRAFT_3426 -1.5 -1.4 conserved hypothetical protein EF_0831/AHA_3912 compare
EX28DRAFT_2250 -1.5 -2.8 peptidoglycan-associated lipoprotein compare
EX28DRAFT_4170 -1.5 -7.0 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_0922 -1.5 -2.3 TonB family C-terminal domain compare
EX28DRAFT_0647 -1.5 -1.7 Ferritin-like protein compare
EX28DRAFT_2958 -1.4 -0.9 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_2938 -1.4 -2.0 tRNA compare
EX28DRAFT_2245 -1.3 -5.0 quinolinate synthetase (EC 2.5.1.72) compare
EX28DRAFT_3275 -1.3 -9.0 Glutamate synthase domain 2 compare
EX28DRAFT_1347 -1.3 -2.5 transcriptional regulator, DeoR family compare
EX28DRAFT_1740 -1.3 -1.0 Phosphotransferase system cellobiose-specific component IIA compare
EX28DRAFT_0399 -1.3 -2.6 Transcriptional regulator compare
EX28DRAFT_3852 -1.2 -1.5 Protein of unknown function (DUF2810) compare
EX28DRAFT_3879 -1.2 -3.5 Glycosyltransferase compare
EX28DRAFT_1650 -1.2 -1.9 ribonuclease T compare
EX28DRAFT_0469 -1.2 -1.9 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
EX28DRAFT_0190 -1.2 -1.2 transcriptional regulator, Spx/MgsR family compare
EX28DRAFT_3883 -1.1 -2.7 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_2175 -1.1 -1.6 hypothetical protein compare
EX28DRAFT_4273 -1.1 -3.0 carbohydrate kinase, thermoresistant glucokinase family compare
EX28DRAFT_0132 -1.1 -2.7 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_4440 -1.1 -3.2 acetolactate synthase, large subunit (EC 2.2.1.6) compare
EX28DRAFT_3708 -1.1 -1.3 Transcriptional regulators compare
EX28DRAFT_3276 -1.1 -3.5 glutamate synthase small subunit family protein, proteobacterial compare
EX28DRAFT_0531 -1.1 -4.7 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_4341 -1.1 -3.0 Protein-disulfide isomerase compare
EX28DRAFT_3611 -1.1 -0.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_1396 -1.1 -0.9 Amidases related to nicotinamidase compare
EX28DRAFT_0545 -1.1 -2.5 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_0861 -1.0 -4.6 Response regulator receiver domain compare
EX28DRAFT_0125 -1.0 -0.7 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_1692 -1.0 -1.0 Biofilm development protein YmgB/AriR compare
EX28DRAFT_0286 -1.0 -1.4 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_0038 -1.0 -0.9 K+ transport systems, NAD-binding component compare
EX28DRAFT_4386 -1.0 -1.6 Signal transduction histidine kinase compare
EX28DRAFT_1122 -1.0 -4.5 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_0998 -1.0 -2.9 Predicted carboxypeptidase compare
EX28DRAFT_0076 -0.9 -1.6 elongation factor 4 compare
EX28DRAFT_4271 -0.9 -0.7 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_1031 -0.9 -1.0 Protein of unknown function (DUF2566) compare
EX28DRAFT_0948 -0.9 -0.9 hypothetical protein compare
EX28DRAFT_3675 -0.9 -4.9 transcriptional regulator, LacI family compare
EX28DRAFT_0779 -0.9 -1.9 hypothetical protein compare
EX28DRAFT_4152 -0.9 -1.0 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_2492 -0.9 -1.6 Protein of unknown function (DUF2496) compare
EX28DRAFT_2255 -0.9 -1.9 tol-pal system-associated acyl-CoA thioesterase compare
EX28DRAFT_3045 -0.9 -1.5 tonB-system energizer ExbB compare
EX28DRAFT_1620 -0.9 -1.1 hypothetical protein compare
EX28DRAFT_2546 -0.9 -3.8 2-dehydropantoate 2-reductase compare
EX28DRAFT_4482 -0.9 -1.6 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) compare
EX28DRAFT_4158 -0.9 -2.5 tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
EX28DRAFT_2985 -0.9 -3.2 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_3643 -0.9 -1.4 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_0071 -0.9 -5.0 L-aspartate oxidase (EC 1.4.3.16) compare
EX28DRAFT_2425 -0.8 -1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0843 -0.8 -1.3 nitrate ABC transporter, permease protein compare
EX28DRAFT_1986 -0.8 -0.6 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_0274 -0.8 -2.5 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific compare
EX28DRAFT_4181 -0.8 -1.2 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
EX28DRAFT_0065 -0.8 -0.9 thioredoxin compare
EX28DRAFT_2348 -0.8 -0.7 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_4350 -0.8 -0.8 nitrogen regulation protein NR(I) compare
EX28DRAFT_0434 -0.8 -0.9 hypothetical protein compare
EX28DRAFT_3729 -0.8 -4.0 pantoate--beta-alanine ligase compare
EX28DRAFT_1438 -0.8 -1.2 Transcriptional regulators compare
EX28DRAFT_0594 -0.8 -0.8 T/G mismatch-specific endonuclease (EC 3.1.-.-) compare
EX28DRAFT_1059 -0.8 -1.3 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog compare
EX28DRAFT_0901 -0.8 -0.7 hypothetical protein compare
EX28DRAFT_0208 -0.8 -2.9 sulfate ABC transporter, ATP-binding protein compare
EX28DRAFT_0593 -0.8 -5.8 DNA-methyltransferase (dcm) compare
EX28DRAFT_0207 -0.8 -3.9 sulfate ABC transporter, permease protein CysW compare
EX28DRAFT_2316 -0.8 -2.1 RNA compare
EX28DRAFT_1941 -0.8 -1.1 Protein of unknown function (DUF4089) compare
EX28DRAFT_3566 -0.8 -1.7 Uncharacterized conserved protein compare
EX28DRAFT_3730 -0.8 -2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
EX28DRAFT_1404 -0.8 -3.3 Predicted kinase compare
EX28DRAFT_0678 -0.8 -2.1 P pilus assembly protein, chaperone PapD compare
EX28DRAFT_1309 -0.8 -2.0 hypothetical protein compare
EX28DRAFT_0374 -0.8 -1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0706 -0.8 -1.5 Entner-Doudoroff aldolase compare
EX28DRAFT_1895 -0.8 -2.8 Histidinol phosphatase and related hydrolases of the PHP family compare
EX28DRAFT_4413 -0.8 -3.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
EX28DRAFT_2424 -0.7 -2.7 transcriptional regulator, TetR family compare
EX28DRAFT_3434 -0.7 -1.3 addiction module antitoxin, RelB/DinJ family compare
EX28DRAFT_3297 -0.7 -2.9 ribonuclease, Rne/Rng family compare
EX28DRAFT_2836 -0.7 -2.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4380 -0.7 -0.7 Protein of unknown function (DUF1471) compare
EX28DRAFT_1915 -0.7 -2.4 pyrimidine utilization protein B compare
EX28DRAFT_3282 -0.7 -1.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4383 -0.7 -4.1 transcriptional regulator, XRE family with cupin sensor compare
EX28DRAFT_4160 -0.7 -2.4 uroporphyrin-III C-methyltransferase compare
EX28DRAFT_2128 -0.7 -1.6 Glutathione S-transferase compare
EX28DRAFT_2996 -0.7 -1.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2519 -0.7 -1.3 nitrogen regulatory protein P-II family compare
EX28DRAFT_0081 -0.7 -2.4 DNA replication and repair protein RecO compare
EX28DRAFT_3605 -0.7 -1.7 Fructose-2,6-bisphosphatase compare
EX28DRAFT_3901 -0.7 -3.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_1932 -0.7 -1.7 Mg/Co/Ni transporter MgtE (contains CBS domain) compare
EX28DRAFT_1508 -0.7 -1.5 Membrane transporters of cations and cationic drugs compare
EX28DRAFT_1881 -0.7 -4.9 Membrane glycosyltransferase compare
EX28DRAFT_3449 -0.7 -1.1 Predicted membrane protein compare
EX28DRAFT_2509 -0.7 -1.8 transcriptional regulator, LacI family compare
EX28DRAFT_3777 -0.7 -1.8 transcriptional antiterminator, Rof compare
EX28DRAFT_2267 -0.7 -2.0 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_0291 -0.7 -0.8 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_2532 -0.7 -2.3 RNA compare
EX28DRAFT_3377 -0.7 -2.3 rRNA methylase, putative, group 3 compare
EX28DRAFT_0142 -0.7 -3.2 hypothetical protein compare
EX28DRAFT_0166 -0.7 -3.9 polyphosphate kinase 1 compare
EX28DRAFT_3415 -0.7 -3.2 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in no stress control experiments

For no stress control Sucrose across organisms