Experiment set1IT078 for Enterobacter asburiae PDN3

Compare to:

M9 with sucrose; no stress control

200 most detrimental genes:

  gene name fitness t score description  
EX28DRAFT_3070 +1.5 2.5 Predicted phosphohydrolases compare
EX28DRAFT_2045 +1.5 1.4 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_0321 +1.3 1.4 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_1307 +1.3 2.0 hypothetical protein compare
EX28DRAFT_0444 +1.2 2.1 Protein-tyrosine-phosphatase compare
EX28DRAFT_1283 +1.2 0.9 hypothetical protein compare
EX28DRAFT_0897 +1.1 1.1 P2-like prophage tail protein X compare
EX28DRAFT_1474 +1.1 1.2 AraC-type DNA-binding domain-containing proteins compare
EX28DRAFT_1167 +1.1 1.0 Uncharacterized conserved protein compare
EX28DRAFT_2646 +1.0 2.4 HNH endonuclease compare
EX28DRAFT_2773 +1.0 2.3 RNA compare
EX28DRAFT_1217 +1.0 2.9 Rhodanese-related sulfurtransferase compare
EX28DRAFT_2400 +1.0 0.9 Cold shock proteins compare
EX28DRAFT_1374 +0.9 0.5 Short-chain dehydrogenases of various substrate specificities compare
EX28DRAFT_0876 +0.9 0.6 hypothetical protein compare
EX28DRAFT_0791 +0.9 1.8 type VI secretion-associated protein, BMA_A0400 family compare
EX28DRAFT_3778 +0.9 2.7 Uncharacterised protein family (UPF0253) compare
EX28DRAFT_3041 +0.9 1.9 hypothetical protein compare
EX28DRAFT_2961 +0.9 1.7 yecA family protein compare
EX28DRAFT_3746 +0.9 4.2 Predicted membrane protein compare
EX28DRAFT_3476 +0.9 0.9 hypothetical protein compare
EX28DRAFT_1218 +0.9 1.2 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
EX28DRAFT_0108 +0.8 0.8 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_2378 +0.8 1.8 ABC-type enterobactin transport system, permease component compare
EX28DRAFT_3507 +0.8 1.1 Response regulator compare
EX28DRAFT_2472 +0.8 0.8 Membrane protein implicated in regulation of membrane protease activity compare
EX28DRAFT_3453 +0.8 0.9 YhcH/YjgK/YiaL family protein compare
EX28DRAFT_3875 +0.8 5.9 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_3245 +0.8 1.1 Predicted NTP binding protein (contains STAS domain) compare
EX28DRAFT_3754 +0.8 0.6 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_2243 +0.8 2.3 cation diffusion facilitator family transporter compare
EX28DRAFT_3732 +0.8 1.6 poly(A) polymerase compare
EX28DRAFT_2277 +0.8 0.9 dinuclear metal center protein, YbgI/SA1388 family compare
EX28DRAFT_2152 +0.8 1.3 Bacterial regulatory proteins, luxR family compare
EX28DRAFT_0612 +0.8 2.6 flagellar export protein FliJ compare
EX28DRAFT_1956 +0.8 0.8 hypothetical protein compare
EX28DRAFT_3877 +0.8 6.2 hypothetical protein compare
EX28DRAFT_1785 +0.8 1.3 Putative hemolysin compare
EX28DRAFT_1342 +0.8 0.9 hypothetical protein compare
EX28DRAFT_0324 +0.8 2.1 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_4065 +0.8 4.0 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_1400 +0.7 1.8 Transcriptional regulators compare
EX28DRAFT_3129 +0.7 1.8 transcriptional regulator, TraR/DksA family compare
EX28DRAFT_2498 +0.7 1.6 Haemolysin expression modulating protein compare
EX28DRAFT_0716 +0.7 1.4 RNA compare
EX28DRAFT_3876 +0.7 5.4 Lipid A core - O-antigen ligase and related enzymes compare
EX28DRAFT_3880 +0.7 6.1 Glycosyltransferase compare
EX28DRAFT_4266 +0.7 1.3 Fe2+/Zn2+ uptake regulation proteins compare
EX28DRAFT_3624 +0.7 2.1 hypothetical protein compare
EX28DRAFT_1695 +0.7 1.7 uncharacterized domain 1 compare
EX28DRAFT_0524 +0.7 2.4 hypothetical protein compare
EX28DRAFT_3967 +0.7 2.0 Domain of unknown function (DUF202) compare
EX28DRAFT_4203 +0.7 1.0 phosphonates metabolism transcriptional regulator PhnF compare
EX28DRAFT_0521 +0.7 1.3 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_4540 +0.7 1.6 Endonuclease V (EC 3.1.21.-) compare
EX28DRAFT_3720 +0.6 2.4 Putative multicopper oxidases compare
EX28DRAFT_0633 +0.6 5.8 two component transcriptional regulator, LuxR family compare
EX28DRAFT_2589 +0.6 0.7 Sigma-S stabilisation anti-adaptor protein compare
EX28DRAFT_1573 +0.6 0.5 hypothetical protein compare
EX28DRAFT_2528 +0.6 2.4 competence protein ComEA helix-hairpin-helix repeat region compare
EX28DRAFT_4134 +0.6 2.0 Fe2+ transport system protein A compare
EX28DRAFT_4301 +0.6 2.8 Protein of unknown function (DUF2500) compare
EX28DRAFT_1870 +0.6 1.5 DinI-like family compare
EX28DRAFT_0601 +0.6 1.3 Protein of unknown function (DUF2525) compare
EX28DRAFT_0918 +0.6 0.8 Ogr/Delta-like zinc finger compare
EX28DRAFT_1280 +0.6 1.4 hypothetical protein compare
EX28DRAFT_2725 +0.6 1.1 hypothetical protein compare
EX28DRAFT_2787 +0.6 0.9 ABC-type metal ion transport system, periplasmic component/surface adhesin compare
EX28DRAFT_3828 +0.6 2.2 Amidases related to nicotinamidase compare
EX28DRAFT_4182 +0.6 1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1384 +0.6 2.3 Predicted ester cyclase compare
EX28DRAFT_0904 +0.6 1.8 hypothetical protein compare
EX28DRAFT_1297 +0.6 1.9 hypothetical protein compare
EX28DRAFT_1177 +0.6 2.1 Domain of unknown function (DUF4406) compare
EX28DRAFT_0882 +0.6 2.7 hypothetical protein compare
EX28DRAFT_3840 +0.6 2.6 Uncharacterized conserved protein compare
EX28DRAFT_4515 +0.6 1.4 hypothetical protein compare
EX28DRAFT_2661 +0.6 1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit compare
EX28DRAFT_3968 +0.6 1.2 Predicted membrane protein compare
EX28DRAFT_2866 +0.6 4.5 Uncharacterized domain of BarA-like signal transduction histidine kinases compare
EX28DRAFT_0667 +0.6 2.2 P pilus assembly protein, chaperone PapD compare
EX28DRAFT_1312 +0.6 1.9 Protein of unknown function (DUF1019) compare
EX28DRAFT_1862 +0.6 0.9 Flagellar biosynthesis/type III secretory pathway chaperone compare
EX28DRAFT_0615 +0.5 0.9 flagellar motor switch protein FliG compare
EX28DRAFT_3452 +0.5 1.7 arginine deiminase (EC 3.5.3.6) compare
EX28DRAFT_4138 +0.5 1.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_0176 +0.5 1.6 Homeodomain-like domain compare
EX28DRAFT_1067 +0.5 1.6 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family compare
EX28DRAFT_1193 +0.5 1.5 diguanylate cyclase (GGDEF) domain compare
EX28DRAFT_1022 +0.5 2.8 cytochrome d oxidase, subunit II (cydB) compare
EX28DRAFT_1804 +0.5 2.3 spermidine/putrescine ABC transporter ATP-binding subunit compare
EX28DRAFT_2020 +0.5 3.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1945 +0.5 1.8 Hydantoin racemase compare
EX28DRAFT_2170 +0.5 0.9 hypothetical protein compare
EX28DRAFT_0632 +0.5 1.0 Protein of unknown function (DUF2594) compare
EX28DRAFT_4173 +0.5 0.8 Predicted redox protein, regulator of disulfide bond formation compare
EX28DRAFT_2884 +0.5 1.4 RNA compare
EX28DRAFT_0518 +0.5 2.2 Bacterial transferase hexapeptide (six repeats) compare
EX28DRAFT_1760 +0.5 1.6 Uncharacterized conserved protein compare
EX28DRAFT_1004 +0.5 2.2 Mg2+ and Co2+ transporters compare
EX28DRAFT_2281 +0.5 2.0 K+-transporting ATPase, B subunit compare
EX28DRAFT_4469 +0.5 2.0 RNA compare
EX28DRAFT_0802 +0.5 2.0 hypothetical protein compare
EX28DRAFT_2489 +0.5 2.0 adenine phosphoribosyltransferase (EC 2.4.2.7) compare
EX28DRAFT_0519 +0.5 2.9 Predicted nucleoside-diphosphate sugar epimerases compare
EX28DRAFT_1685 +0.5 1.6 FeS assembly ATPase SufC compare
EX28DRAFT_0437 +0.5 1.8 two component transcriptional regulator, LytTR family compare
EX28DRAFT_3475 +0.5 1.4 hypothetical protein compare
EX28DRAFT_3771 +0.5 1.6 RNase HII (EC 3.1.26.4) compare
EX28DRAFT_0602 +0.5 0.6 Dextransucrase DSRB compare
EX28DRAFT_3787 +0.5 2.7 D-methionine ABC transporter, ATP-binding protein compare
EX28DRAFT_3854 +0.5 1.0 Transcriptional regulators compare
EX28DRAFT_3815 +0.5 2.1 Sugar kinases, ribokinase family compare
EX28DRAFT_3531 +0.5 2.8 hypothetical protein compare
EX28DRAFT_2649 +0.5 1.1 tRNA compare
EX28DRAFT_2196 +0.5 2.1 Multidrug resistance efflux pump compare
EX28DRAFT_0441 +0.5 0.9 Acetyltransferases compare
EX28DRAFT_4405 +0.5 0.4 ATP-dependent protease HslVU, peptidase subunit compare
EX28DRAFT_1950 +0.5 0.8 OHCU decarboxylase compare
EX28DRAFT_0526 +0.5 1.0 hypothetical protein compare
EX28DRAFT_2258 +0.5 0.5 cytochrome d oxidase, subunit II (cydB) compare
EX28DRAFT_1199 +0.5 1.7 Transcriptional regulator compare
EX28DRAFT_2746 +0.5 0.8 hypothetical protein compare
EX28DRAFT_1684 +0.5 2.4 FeS assembly protein SufD compare
EX28DRAFT_4253 +0.5 0.9 Phage-related lysozyme (muraminidase) compare
EX28DRAFT_1021 +0.5 0.9 Protein of unknown function (DUF2474) compare
EX28DRAFT_1885 +0.5 1.6 hypothetical protein compare
EX28DRAFT_4410 +0.5 1.0 methionine repressor, MetJ compare
EX28DRAFT_1118 +0.5 2.3 transcriptional regulator, RpiR family compare
EX28DRAFT_2161 +0.5 1.8 P pilus assembly protein, pilin FimA compare
EX28DRAFT_2956 +0.5 2.1 glycine cleavage system H protein compare
EX28DRAFT_3550 +0.5 2.0 Predicted acetyltransferase compare
EX28DRAFT_4135 +0.4 0.5 hypothetical protein compare
EX28DRAFT_3233 +0.4 1.2 RNA compare
EX28DRAFT_3096 +0.4 0.7 Hydrogenase/urease accessory protein compare
EX28DRAFT_0256 +0.4 1.9 hypothetical protein compare
EX28DRAFT_0047 +0.4 0.9 Protein of unknown function (DUF1488) compare
EX28DRAFT_1300 +0.4 0.7 hypothetical protein compare
EX28DRAFT_1239 +0.4 0.5 hypothetical protein compare
EX28DRAFT_1365 +0.4 1.9 Transcriptional regulator compare
EX28DRAFT_0155 +0.4 1.0 Sugar phosphate isomerases/epimerases compare
EX28DRAFT_0983 +0.4 1.8 ABC-type sugar transport system, permease component compare
EX28DRAFT_3383 +0.4 0.6 Alpha/beta hydrolase family compare
EX28DRAFT_0516 +0.4 1.6 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_0996 +0.4 1.2 Peroxiredoxin compare
EX28DRAFT_2828 +0.4 0.7 Toxin SymE, type I toxin-antitoxin system compare
EX28DRAFT_4259 +0.4 3.0 alanine racemase compare
EX28DRAFT_3698 +0.4 1.2 guanosine monophosphate reductase, eukaryotic compare
EX28DRAFT_0600 +0.4 0.9 RNA compare
EX28DRAFT_0848 +0.4 0.6 two component transcriptional regulator, LuxR family compare
EX28DRAFT_1546 +0.4 2.0 transporter, basic amino acid/polyamine antiporter (APA) family compare
EX28DRAFT_1619 +0.4 2.3 Predicted dehydrogenases and related proteins compare
EX28DRAFT_2501 +0.4 2.4 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
EX28DRAFT_1200 +0.4 0.8 Acetyltransferases compare
EX28DRAFT_0181 +0.4 1.9 Glycine cleavage system regulatory protein compare
EX28DRAFT_4269 +0.4 0.6 SOS regulatory protein LexA compare
EX28DRAFT_3042 +0.4 1.5 hypothetical protein compare
EX28DRAFT_1554 +0.4 2.1 Peptidase S24-like compare
EX28DRAFT_1800 +0.4 2.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_2164 +0.4 1.4 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) compare
EX28DRAFT_3932 +0.4 1.8 transcriptional regulator, TetR family compare
EX28DRAFT_1139 +0.4 1.4 hypothetical protein compare
EX28DRAFT_1450 +0.4 1.4 Short-chain alcohol dehydrogenase of unknown specificity compare
EX28DRAFT_2738 +0.4 1.1 ADP-ribose pyrophosphatase compare
EX28DRAFT_2370 +0.4 1.7 uncharacterized domain 1 compare
EX28DRAFT_3701 +0.4 0.9 prepilin-type N-terminal cleavage/methylation domain compare
EX28DRAFT_3982 +0.4 2.0 Transcriptional regulators compare
EX28DRAFT_1628 +0.4 0.6 electron transport complex, RnfABCDGE type, E subunit compare
EX28DRAFT_0997 +0.4 1.4 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily compare
EX28DRAFT_2890 +0.4 0.6 tRNA compare
EX28DRAFT_4096 +0.4 1.5 Outer membrane lipoprotein-sorting protein compare
EX28DRAFT_0073 +0.4 0.4 Negative regulator of sigma E activity compare
EX28DRAFT_1453 +0.4 0.9 putative selenium-binding protein YdfZ compare
EX28DRAFT_0282 +0.4 2.0 Arabinose efflux permease compare
EX28DRAFT_0784 +0.4 1.7 Transcriptional regulator compare
EX28DRAFT_1818 +0.4 1.7 Protein of unknown function (DUF1471) compare
EX28DRAFT_0341 +0.4 1.1 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase compare
EX28DRAFT_1415 +0.4 0.9 Enoyl-CoA hydratase/carnithine racemase compare
EX28DRAFT_2541 +0.4 0.5 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_1584 +0.4 0.8 hypothetical protein compare
EX28DRAFT_4382 +0.4 1.5 Predicted branched-chain amino acid permease (azaleucine resistance) compare
EX28DRAFT_0752 +0.4 1.2 outer membrane lipoprotein, Slp family compare
EX28DRAFT_4196 +0.4 1.2 YjcZ-like protein compare
EX28DRAFT_2317 +0.4 2.1 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
EX28DRAFT_2638 +0.4 1.7 hypothetical protein compare
EX28DRAFT_0854 +0.4 0.9 respiratory nitrate reductase, gamma subunit compare
EX28DRAFT_4024 +0.4 1.9 ABC-type ribose transport system, auxiliary component compare
EX28DRAFT_3952 +0.4 1.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
EX28DRAFT_4497 +0.4 2.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3198 +0.4 1.7 Phosphoheptose isomerase compare
EX28DRAFT_2284 +0.4 2.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_0697 +0.4 0.8 ABC-type Mn2+/Zn2+ transport systems, permease components compare
EX28DRAFT_3167 +0.4 1.2 Predicted membrane protein compare
EX28DRAFT_0215 +0.4 1.9 Uncharacterized protein involved in cysteine biosynthesis compare
EX28DRAFT_0631 +0.4 2.3 DNA-binding HTH domain-containing proteins compare
EX28DRAFT_0874 +0.4 1.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4018 +0.4 0.5 Flavodoxins compare
EX28DRAFT_0579 +0.4 0.6 Uncharacterized protein conserved in bacteria (DUF2256) compare
EX28DRAFT_3849 +0.4 0.7 PTS system, mannitol-specific IIC component compare
EX28DRAFT_1984 +0.4 1.2 regulator of competence-specific genes compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in no stress control experiments

For no stress control Sucrose across organisms