Experiment set1IT077 for Variovorax sp. OAS795

Compare to:

D,L-Malic Acid carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS14955 -7.1 -8.4 response regulator compare
ABID97_RS04610 -6.9 -6.7 potassium transporter Kup compare
ABID97_RS06575 -6.1 -7.2 trehalose-phosphatase compare
ABID97_RS07390 -6.0 -5.1 rhodanese-like domain-containing protein compare
ABID97_RS23225 -6.0 -15.5 glutamate synthase-related protein compare
ABID97_RS01565 -5.7 -9.9 DNA starvation/stationary phase protection protein compare
ABID97_RS17970 -5.4 -4.8 protein TolQ compare
ABID97_RS16690 -5.1 -7.0 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS16595 -5.1 -5.9 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS16535 -5.0 -6.9 arginine/lysine/ornithine decarboxylase compare
ABID97_RS15380 -5.0 -9.1 nitrite/sulfite reductase compare
ABID97_RS05260 -5.0 -1.9 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS23935 -5.0 -3.2 twin transmembrane helix small protein compare
ABID97_RS05250 -4.9 -4.8 anthranilate synthase component I compare
ABID97_RS16600 -4.9 -9.3 CysB family HTH-type transcriptional regulator compare
ABID97_RS08425 -4.8 -3.3 tryptophan synthase subunit alpha compare
ABID97_RS07410 -4.7 -9.2 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS24170 -4.7 -5.6 ATP-binding protein compare
ABID97_RS08570 -4.7 -4.6 ferrous iron transporter B compare
ABID97_RS07775 -4.7 -4.9 phosphoribosylglycinamide formyltransferase compare
ABID97_RS02855 -4.6 -11.5 sensor histidine kinase N-terminal domain-containing protein compare
ABID97_RS07000 -4.6 -9.4 threonine ammonia-lyase, biosynthetic compare
ABID97_RS06515 -4.6 -10.0 SDR family oxidoreductase compare
ABID97_RS09180 -4.5 -3.1 DNA polymerase I compare
ABID97_RS14965 -4.5 -8.2 DegQ family serine endoprotease compare
ABID97_RS16695 -4.5 -15.5 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS09905 -4.5 -16.8 YncE family protein compare
ABID97_RS09915 -4.5 -8.0 sterol desaturase family protein compare
ABID97_RS19495 -4.4 -4.3 glucan biosynthesis protein D compare
ABID97_RS23665 -4.4 -2.7 DNA-directed RNA polymerase subunit omega compare
ABID97_RS07430 -4.4 -9.9 pantoate--beta-alanine ligase compare
ABID97_RS20615 -4.4 -6.9 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS25340 -4.3 -7.2 apolipoprotein N-acyltransferase compare
ABID97_RS23425 -4.3 -2.9 tRNA-Pro compare
ABID97_RS02420 -4.2 -10.5 protealysin inhibitor emfourin compare
ABID97_RS14260 -4.2 -8.4 FtsH protease activity modulator HflK compare
ABID97_RS02600 -4.0 -2.8 homoserine O-acetyltransferase compare
ABID97_RS17265 -4.0 -5.2 two-component system response regulator OmpR compare
ABID97_RS02850 -4.0 -11.5 response regulator transcription factor compare
ABID97_RS25015 -3.9 -3.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS03680 -3.9 -8.9 lysophospholipid transporter LplT compare
ABID97_RS14975 -3.8 -4.0 hypothetical protein compare
ABID97_RS05370 -3.7 -4.4 ATP-binding protein compare
ABID97_RS14265 -3.7 -9.2 protease modulator HflC compare
ABID97_RS07415 -3.7 -13.7 quinolinate synthase NadA compare
ABID97_RS06345 -3.7 -3.6 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS23290 -3.6 -9.8 penicillin-binding protein 1A compare
ABID97_RS10295 -3.6 -1.9 winged helix-turn-helix transcriptional regulator compare
ABID97_RS23220 -3.5 -1.7 glutamate synthase subunit beta compare
ABID97_RS05365 -3.5 -4.2 DUF4390 domain-containing protein compare
ABID97_RS04760 -3.5 -2.4 SPOR domain-containing protein compare
ABID97_RS12180 -3.5 -2.4 hypothetical protein compare
ABID97_RS17590 -3.4 -14.4 endopeptidase La compare
ABID97_RS04885 -3.4 -17.5 YbdK family carboxylate-amine ligase compare
ABID97_RS03805 -3.3 -1.7 ATP-binding protein compare
ABID97_RS10885 -3.3 -5.0 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS23455 -3.3 -3.2 hypothetical protein compare
ABID97_RS01955 -3.3 -8.9 FadR/GntR family transcriptional regulator compare
ABID97_RS13990 -3.3 -3.9 amino acid aminotransferase compare
ABID97_RS07435 -3.3 -10.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS08330 -3.3 -16.3 RNA polymerase sigma factor RpoE compare
ABID97_RS15375 -3.2 -4.8 DUF934 domain-containing protein compare
ABID97_RS24920 -3.2 -2.3 Holliday junction branch migration protein RuvA compare
ABID97_RS07440 -3.2 -9.1 L-aspartate oxidase compare
ABID97_RS15465 -3.2 -15.3 sulfate ABC transporter substrate-binding protein compare
ABID97_RS15665 -3.2 -7.3 [protein-PII] uridylyltransferase compare
ABID97_RS23450 -3.1 -3.7 MBOAT family protein compare
ABID97_RS05755 -3.1 -2.1 glycosyltransferase compare
ABID97_RS05280 -3.0 -2.0 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS17270 -3.0 -9.7 ATP-binding protein compare
ABID97_RS10705 -2.9 -5.9 H-NS histone family protein compare
ABID97_RS07630 -2.9 -3.9 cytochrome o ubiquinol oxidase subunit III compare
ABID97_RS23440 -2.9 -13.7 A24 family peptidase compare
ABID97_RS05750 -2.9 -2.8 glycosyltransferase compare
ABID97_RS09910 -2.8 -7.3 polysaccharide deacetylase family protein compare
ABID97_RS04890 -2.8 -5.9 cation:proton antiporter compare
ABID97_RS04765 -2.8 -1.9 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS04500 -2.8 -1.9 HPr(Ser) kinase/phosphatase compare
ABID97_RS08435 -2.7 -1.9 phosphoribosylanthranilate isomerase compare
ABID97_RS27785 -2.7 -10.4 TetR/AcrR family transcriptional regulator compare
ABID97_RS06450 -2.7 -1.8 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS14870 -2.6 -12.6 DUF3106 domain-containing protein compare
ABID97_RS21150 -2.6 -9.8 FAD-dependent oxidoreductase compare
ABID97_RS06460 -2.6 -1.8 sigma 54-interacting transcriptional regulator compare
ABID97_RS03800 -2.6 -3.0 O-antigen ligase family protein compare
ABID97_RS03910 -2.6 -2.4 orotate phosphoribosyltransferase compare
ABID97_RS05740 -2.6 -4.2 glycosyltransferase family A protein compare
ABID97_RS15370 -2.6 -13.5 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS05275 -2.6 -2.4 anthranilate phosphoribosyltransferase compare
ABID97_RS16985 -2.6 -4.2 transcriptional repressor LexA compare
ABID97_RS05765 -2.5 -3.0 UDP-glucose 4-epimerase GalE compare
ABID97_RS26545 -2.5 -1.3 alpha/beta fold hydrolase compare
ABID97_RS18495 -2.5 -1.6 DUF2889 domain-containing protein compare
ABID97_RS07500 -2.4 -2.8 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS21925 -2.4 -12.2 heme-binding beta-barrel domain-containing protein compare
ABID97_RS24730 -2.4 -3.2 Fis family transcriptional regulator compare
ABID97_RS10880 -2.4 -2.3 Mth938-like domain-containing protein compare
ABID97_RS06275 -2.3 -2.1 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS08710 -2.3 -7.1 polynucleotide adenylyltransferase PcnB compare
ABID97_RS19065 -2.3 -5.9 GntR family transcriptional regulator compare
ABID97_RS15360 -2.2 -6.4 GTP-binding protein compare
ABID97_RS17895 -2.2 -8.7 transcriptional regulator NrdR compare
ABID97_RS17850 -2.2 -1.1 tetratricopeptide repeat protein compare
ABID97_RS20095 -2.2 -2.5 DNA topoisomerase IV subunit B compare
ABID97_RS06520 -2.2 -1.5 SAM-dependent methyltransferase compare
ABID97_RS13860 -2.1 -7.1 hypothetical protein compare
ABID97_RS21645 -2.1 -3.8 SPOR domain-containing protein compare
ABID97_RS07615 -2.1 -5.1 ATP-binding protein compare
ABID97_RS14625 -2.1 -5.7 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS17635 -2.1 -3.4 presqualene diphosphate synthase HpnD compare
ABID97_RS29030 -2.1 -1.9 3-isopropylmalate dehydratase small subunit compare
ABID97_RS10720 -2.1 -5.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABID97_RS08480 -2.0 -1.4 citrate synthase compare
ABID97_RS20905 -2.0 -2.6 hypothetical protein compare
ABID97_RS07610 -2.0 -1.3 response regulator transcription factor compare
ABID97_RS15365 -2.0 -5.0 sulfate adenylyltransferase subunit CysD compare
ABID97_RS01650 -2.0 -1.3 orotidine-5'-phosphate decarboxylase compare
ABID97_RS00255 -2.0 -11.3 type IV pilus twitching motility protein PilT compare
ABID97_RS10210 -2.0 -1.3 TfoX/Sxy family protein compare
ABID97_RS25565 -2.0 -4.3 NADP-dependent oxidoreductase compare
ABID97_RS07640 -2.0 -10.4 ubiquinol oxidase subunit II compare
ABID97_RS15490 -2.0 -5.7 FMNH2-dependent alkanesulfonate monooxygenase compare
ABID97_RS16915 -2.0 -8.1 ATP-dependent Clp protease adapter ClpS compare
ABID97_RS08430 -2.0 -1.3 tryptophan synthase subunit beta compare
ABID97_RS08445 -1.9 -7.8 FimV/HubP family polar landmark protein compare
ABID97_RS23710 -1.9 -8.4 RNase adapter RapZ compare
ABID97_RS14665 -1.9 -3.1 UvrD-helicase domain-containing protein compare
ABID97_RS08365 -1.9 -3.2 ribonuclease III compare
ABID97_RS05670 -1.9 -1.8 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS10695 -1.9 -5.6 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS02140 -1.9 -8.5 sugar transferase compare
ABID97_RS07170 -1.8 -9.1 hemolysin family protein compare
ABID97_RS25570 -1.8 -4.5 alkene reductase compare
ABID97_RS10430 -1.8 -3.5 CerR family C-terminal domain-containing protein compare
ABID97_RS14160 -1.8 -6.1 cell division protein ZapE compare
ABID97_RS00315 -1.8 -10.2 TetR family transcriptional regulator compare
ABID97_RS16935 -1.8 -2.2 DUF192 domain-containing protein compare
ABID97_RS17200 -1.8 -12.9 ribonuclease R compare
ABID97_RS08220 -1.8 -9.7 phosphoenolpyruvate carboxylase compare
ABID97_RS20405 -1.8 -4.8 MarR family transcriptional regulator compare
ABID97_RS05700 -1.8 -10.0 GDP-mannose 4,6-dehydratase compare
ABID97_RS19540 -1.8 -6.4 phosphoethanolamine--lipid A transferase compare
ABID97_RS20020 -1.7 -1.7 LacI family DNA-binding transcriptional regulator compare
ABID97_RS10635 -1.7 -8.1 excinuclease ABC subunit UvrC compare
ABID97_RS17595 -1.7 -7.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS02145 -1.7 -7.3 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS18255 -1.7 -1.2 hypothetical protein compare
ABID97_RS07635 -1.7 -10.3 cytochrome o ubiquinol oxidase subunit I compare
ABID97_RS01420 -1.7 -10.6 cyclopropane-fatty-acyl-phospholipid synthase family protein compare
ABID97_RS14925 -1.7 -8.7 arginyltransferase compare
ABID97_RS15470 -1.7 -2.4 NADPH-dependent FMN reductase compare
ABID97_RS15505 -1.6 -1.0 ATP-binding cassette domain-containing protein compare
ABID97_RS21165 -1.6 -3.9 energy-dependent translational throttle protein EttA compare
ABID97_RS02135 -1.6 -6.0 GspH/FimT family pseudopilin compare
ABID97_RS23655 -1.6 -5.6 YicC/YloC family endoribonuclease compare
ABID97_RS06420 -1.6 -7.9 ATP-binding protein compare
ABID97_RS18205 -1.6 -2.7 XRE family transcriptional regulator compare
ABID97_RS14575 -1.6 -9.4 polyphosphate kinase 1 compare
ABID97_RS07380 -1.6 -5.1 S41 family peptidase compare
ABID97_RS10735 -1.6 -4.5 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
ABID97_RS15620 -1.6 -5.7 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABID97_RS04505 -1.6 -2.6 ferric iron uptake transcriptional regulator compare
ABID97_RS24945 -1.6 -7.1 cation diffusion facilitator family transporter compare
ABID97_RS25345 -1.6 -5.4 transporter associated domain-containing protein compare
ABID97_RS02110 -1.6 -10.4 type IV pilus modification protein PilV compare
ABID97_RS10690 -1.5 -9.2 GlsB/YeaQ/YmgE family stress response membrane protein compare
ABID97_RS17560 -1.5 -3.5 hypothetical protein compare
ABID97_RS12140 -1.5 -4.4 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS23430 -1.5 -7.9 type IV-A pilus assembly ATPase PilB compare
ABID97_RS28990 -1.5 -5.8 aspartate 1-decarboxylase compare
ABID97_RS06415 -1.5 -8.9 sigma-54 dependent transcriptional regulator compare
ABID97_RS00540 -1.5 -7.1 HAMP domain-containing sensor histidine kinase compare
ABID97_RS10815 -1.5 -10.3 phosphoenolpyruvate synthase compare
ABID97_RS02130 -1.5 -8.6 type IV pilin protein compare
ABID97_RS23435 -1.5 -9.1 type II secretion system F family protein compare
ABID97_RS07015 -1.5 -8.4 OsmC family protein compare
ABID97_RS23270 -1.5 -7.1 pilus assembly protein PilP compare
ABID97_RS22595 -1.5 -4.7 3',5'-nucleoside bisphosphate phosphatase compare
ABID97_RS01840 -1.5 -9.1 DUF1631 family protein compare
ABID97_RS02200 -1.4 -11.4 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS08360 -1.4 -3.6 DUF4845 domain-containing protein compare
ABID97_RS16580 -1.4 -2.5 leucyl aminopeptidase compare
ABID97_RS17135 -1.4 -7.2 RIP metalloprotease RseP compare
ABID97_RS02125 -1.4 -11.5 PilC/PilY family type IV pilus protein compare
ABID97_RS02155 -1.4 -7.5 glycosyltransferase family 4 protein compare
ABID97_RS20390 -1.4 -3.7 DHA2 family efflux MFS transporter permease subunit compare
ABID97_RS07405 -1.4 -7.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS08130 -1.4 -1.2 DUF3297 family protein compare
ABID97_RS23230 -1.4 -7.1 transposase compare
ABID97_RS05850 -1.4 -2.6 TetR/AcrR family transcriptional regulator compare
ABID97_RS09935 -1.4 -5.9 hypothetical protein compare
ABID97_RS03415 -1.4 -4.8 histidine utilization repressor compare
ABID97_RS16705 -1.3 -8.7 ribonuclease G compare
ABID97_RS13980 -1.3 -0.8 RnfABCDGE type electron transport complex subunit B compare
ABID97_RS09595 -1.3 -1.8 Arc family DNA-binding protein compare
ABID97_RS14890 -1.3 -4.3 acetolactate synthase small subunit compare
ABID97_RS20980 -1.3 -1.2 transcriptional repressor compare
ABID97_RS06255 -1.3 -3.0 cell division protein FtsA compare
ABID97_RS02455 -1.3 -3.5 nucleotidyltransferase family protein compare
ABID97_RS16925 -1.3 -3.5 cell envelope biogenesis protein TolA compare


Specific Phenotypes

For 21 genes in this experiment

For carbon source D,L-Malic Acid in Variovorax sp. OAS795

For carbon source D,L-Malic Acid across organisms