Experiment set1IT077 for Magnetospirillum magneticum AMB-1

Compare to:

without_iron3

200 most important genes:

  gene name fitness t score description  
AMB_RS21290 -2.3 -2.9 DUF4139 domain-containing protein compare
AMB_RS20120 -2.3 -4.3 VOC family protein compare
AMB_RS00010 -2.1 -4.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
AMB_RS03205 -2.0 -4.2 DNA recombination/repair protein RecA compare
AMB_RS14035 -2.0 -6.7 endopeptidase La compare
AMB_RS11640 -1.8 -3.4 UbiX family flavin prenyltransferase compare
AMB_RS07745 -1.6 -4.3 disulfide bond formation protein B compare
AMB_RS11740 -1.6 -11.1 ubiquinone-binding protein compare
AMB_RS16130 -1.5 -2.4 phosphoglycerate dehydrogenase compare
AMB_RS22325 -1.5 -7.8 4Fe-4S binding domain-containing protein compare
AMB_RS22800 -1.5 -2.6 glutathione synthase compare
AMB_RS22490 -1.5 -2.8 YdcF family protein compare
AMB_RS19790 -1.4 -5.5 NAD(P)-dependent oxidoreductase compare
AMB_RS07010 -1.4 -6.1 ATP-dependent helicase compare
AMB_RS01190 -1.4 -5.4 UbiD family decarboxylase compare
AMB_RS22315 -1.3 -5.4 membrane protein compare
AMB_RS01830 -1.3 -0.6 hypothetical protein compare
AMB_RS19880 -1.3 -3.8 site-specific tyrosine recombinase XerD compare
AMB_RS19545 -1.3 -3.2 elongation factor 4 compare
AMB_RS16100 -1.2 -4.7 RNA polymerase sigma factor RpoH compare
AMB_RS15295 -1.2 -2.2 iron donor protein CyaY compare
AMB_RS12320 -1.2 -3.2 septal ring lytic transglycosylase RlpA family protein compare
AMB_RS18110 -1.1 -1.9 cAMP-binding protein compare
AMB_RS16080 -1.1 -2.4 tRNA-Glu compare
AMB_RS00355 -1.1 -6.1 radical SAM protein compare
AMB_RS20350 -1.1 -4.2 aspartate 1-decarboxylase compare
AMB_RS14175 -1.1 -1.7 COQ9 family protein compare
AMB_RS09095 -1.0 -4.1 hypothetical protein compare
AMB_RS05435 -1.0 -2.7 ABC transporter permease compare
AMB_RS18590 -1.0 -2.1 glycosyltransferase family 2 protein compare
AMB_RS22810 -1.0 -1.2 hypothetical protein compare
AMB_RS07865 -1.0 -5.1 ATP-dependent chaperone ClpB compare
AMB_RS21265 -1.0 -3.5 c-type cytochrome biogenesis protein CcmI compare
AMB_RS21455 -1.0 -4.1 XRE family transcriptional regulator compare
AMB_RS24580 -1.0 -3.8 hypothetical protein compare
AMB_RS03835 -0.9 -2.0 YicC family protein compare
AMB_RS21385 -0.9 -4.9 helix-turn-helix transcriptional regulator compare
AMB_RS11195 -0.9 -0.9 sulfate adenylyltransferase subunit 2 compare
AMB_RS02660 -0.9 -3.6 SCO family protein compare
AMB_RS01325 -0.8 -2.3 phosphatase PAP2 family protein compare
AMB_RS15180 -0.8 -5.1 hypothetical protein compare
AMB_RS21430 -0.8 -0.7 hypothetical protein compare
AMB_RS23090 -0.8 -2.6 NAD(P)-dependent oxidoreductase compare
AMB_RS15550 -0.8 -4.7 copper chaperone PCu(A)C compare
AMB_RS14240 -0.8 -2.4 hypothetical protein compare
AMB_RS01605 -0.8 -2.1 aspartate aminotransferase family protein compare
AMB_RS07115 -0.8 -2.2 Lrp/AsnC family transcriptional regulator compare
AMB_RS23195 -0.8 -2.3 ABC transporter ATP-binding protein compare
AMB_RS01745 -0.8 -1.6 hypothetical protein compare
AMB_RS12615 -0.8 -4.1 phytoene/squalene synthetase compare
AMB_RS24000 -0.8 -1.9 glycosyltransferase family 1 protein compare
AMB_RS13920 -0.7 -1.7 molybdopterin-guanine dinucleotide biosynthesis protein B compare
AMB_RS17450 -0.7 -2.2 DUF1987 domain-containing protein compare
AMB_RS00815 -0.7 -5.0 hypothetical protein compare
AMB_RS02485 -0.7 -2.1 hypothetical protein compare
AMB_RS21210 -0.7 -3.3 hydroxyacylglutathione hydrolase compare
AMB_RS12395 -0.7 -1.9 succinate dehydrogenase assembly factor 2 compare
AMB_RS00810 -0.7 -3.6 hypothetical protein compare
AMB_RS17980 -0.7 -2.7 biopolymer transporter ExbD compare
AMB_RS00800 -0.7 -3.8 nucleoside-diphosphate-sugar pyrophosphorylase compare
AMB_RS13510 -0.7 -2.4 cytochrome C protein NapC compare
AMB_RS02240 -0.7 -1.4 surface lipoprotein compare
AMB_RS15200 -0.7 -5.2 hypothetical protein compare
AMB_RS11725 -0.7 -2.9 hypothetical protein compare
AMB_RS14595 -0.7 -2.9 acetoin utilization protein compare
AMB_RS01225 -0.7 -3.1 tRNA pseudouridine(38-40) synthase TruA compare
AMB_RS04885 -0.7 -1.6 hypothetical protein compare
AMB_RS11390 -0.7 -2.8 NYN domain-containing protein compare
AMB_RS12785 -0.7 -2.5 murein transglycosylase compare
AMB_RS11295 -0.7 -2.5 hypothetical protein compare
AMB_RS02690 -0.7 -2.6 dihydropyrimidine dehydrogenase subunit A compare
AMB_RS19875 -0.7 -1.3 hypothetical protein compare
AMB_RS20020 -0.7 -1.1 cell division protein ZapE compare
AMB_RS14525 -0.7 -0.7 xylanase/chitin deacetylase compare
AMB_RS22320 -0.6 -5.1 carbohydrate porin compare
AMB_RS01330 -0.6 -2.4 glycosyltransferase family 39 protein compare
AMB_RS17400 -0.6 -3.3 esterase compare
AMB_RS12405 -0.6 -3.4 UPF0016 domain-containing protein compare
AMB_RS00795 -0.6 -4.8 LPS biosynthesis protein compare
AMB_RS23890 -0.6 -2.4 hypothetical protein compare
AMB_RS04800 -0.6 -1.5 DUF2384 domain-containing protein compare
AMB_RS01305 -0.6 -4.3 protocatechuate 4,5-dioxygenase subunit alpha compare
AMB_RS06660 -0.6 -2.2 hypothetical protein compare
AMB_RS12355 -0.6 -0.7 ABC transporter ATP-binding protein compare
AMB_RS14815 -0.6 -2.5 CbbQ/NirQ/NorQ/GpvN family protein compare
AMB_RS24445 -0.6 -2.3 hypothetical protein compare
AMB_RS03725 -0.6 -2.5 DNA helicase II compare
AMB_RS03655 -0.6 -3.0 hypothetical protein compare
AMB_RS17445 -0.6 -1.3 hypothetical protein compare
AMB_RS16160 -0.6 -1.5 hypothetical protein compare
AMB_RS20055 -0.6 -2.1 MerR family transcriptional regulator compare
AMB_RS21050 -0.6 -1.0 CoA pyrophosphatase compare
AMB_RS19160 -0.6 -2.1 methyltransferase domain-containing protein compare
AMB_RS14270 -0.6 -1.4 response regulator compare
AMB_RS17795 -0.6 -0.6 hypothetical protein compare
AMB_RS20145 -0.6 -1.4 chromosome segregation ATPase compare
AMB_RS06155 -0.6 -1.6 hypothetical protein compare
AMB_RS06380 -0.6 -1.3 C4-dicarboxylate ABC transporter compare
AMB_RS10580 -0.6 -1.4 hypothetical protein compare
AMB_RS21725 -0.6 -2.0 hemerythrin compare
AMB_RS23015 -0.6 -2.1 septum formation protein Maf compare
AMB_RS12920 -0.6 -2.4 exo-beta-1,3-glucanase compare
AMB_RS17345 -0.6 -1.8 rubredoxin compare
AMB_RS10985 -0.6 -2.0 hypothetical protein compare
AMB_RS15185 -0.6 -2.7 cytochrome c-552 precursor compare
AMB_RS06290 -0.6 -2.0 hypothetical protein compare
AMB_RS07875 -0.6 -2.5 homocitrate synthase compare
AMB_RS04910 -0.6 -1.2 hypothetical protein compare
AMB_RS01895 -0.5 -2.0 hypothetical protein compare
AMB_RS08115 -0.5 -3.2 carbon-nitrogen hydrolase family protein compare
AMB_RS00805 -0.5 -4.4 haloacid dehalogenase compare
AMB_RS14025 -0.5 -1.5 tRNA-Val compare
AMB_RS24585 -0.5 -2.3 hypothetical protein compare
AMB_RS21955 -0.5 -1.8 hypothetical protein compare
AMB_RS11780 -0.5 -1.7 glutamate synthase subunit beta compare
AMB_RS20750 -0.5 -2.8 YbaB/EbfC family nucleoid-associated protein compare
AMB_RS04215 -0.5 -2.3 bacterioferritin compare
AMB_RS02655 -0.5 -3.9 sulfite exporter TauE/SafE family protein compare
AMB_RS15930 -0.5 -1.6 hypothetical protein compare
AMB_RS07240 -0.5 -3.7 PAS domain-containing sensor histidine kinase compare
AMB_RS02835 -0.5 -1.1 two-component sensor histidine kinase compare
AMB_RS06130 -0.5 -1.6 hypothetical protein compare
AMB_RS10555 -0.5 -1.4 DNA repair protein RadA compare
AMB_RS03510 -0.5 -3.4 flagellin-like protein compare
AMB_RS22150 -0.5 -0.8 MarR family transcriptional regulator compare
AMB_RS09570 -0.5 -1.8 baseplate assembly protein compare
AMB_RS22480 -0.5 -1.3 cell division ATP-binding protein FtsE compare
AMB_RS09775 -0.5 -1.2 DUF2815 domain-containing protein compare
AMB_RS13815 -0.5 -1.5 hypothetical protein compare
AMB_RS18330 -0.5 -3.0 glycosyl transferase family protein compare
AMB_RS19565 -0.5 -2.1 peptidase M23 compare
AMB_RS22580 -0.5 -3.4 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
AMB_RS19255 -0.5 -3.4 excinuclease ABC subunit UvrB compare
AMB_RS13415 -0.5 -3.2 sulfurtransferase FdhD compare
AMB_RS15560 -0.5 -1.0 hemerythrin compare
AMB_RS16430 -0.5 -1.5 hypothetical protein compare
AMB_RS17350 -0.5 -0.9 rubrerythrin compare
AMB_RS09565 -0.5 -2.5 hypothetical protein compare
AMB_RS14805 -0.5 -2.6 hypothetical protein compare
AMB_RS22085 -0.5 -4.7 cytochrome c oxidase accessory protein CcoG compare
AMB_RS07105 -0.5 -1.6 Lrp/AsnC family transcriptional regulator compare
AMB_RS21445 -0.5 -3.3 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha compare
AMB_RS04280 -0.5 -3.9 polyhydroxyalkanoate synthesis repressor PhaR compare
AMB_RS07570 -0.5 -0.9 hypothetical protein compare
AMB_RS20015 -0.5 -3.8 exopolyphosphatase compare
AMB_RS12590 -0.5 -2.7 tetratricopeptide repeat protein compare
AMB_RS22970 -0.5 -1.2 hypothetical protein compare
AMB_RS18015 -0.5 -1.8 ABC transporter ATP-binding protein compare
AMB_RS15095 -0.5 -1.4 LamB/YcsF family protein compare
AMB_RS01930 -0.5 -1.0 DUF4172 domain-containing protein compare
AMB_RS24330 -0.5 -1.2 DNA-binding protein compare
AMB_RS17335 -0.5 -0.7 N-acyl-L-homoserine lactone synthetase compare
AMB_RS17295 -0.5 -0.5 PilZ domain-containing protein compare
AMB_RS24350 -0.5 -0.8 hypothetical protein compare
AMB_RS03045 -0.5 -0.3 hydrogen peroxide-inducible genes activator compare
AMB_RS07600 -0.5 -2.0 hypothetical protein compare
AMB_RS04325 -0.5 -2.1 TetR/AcrR family transcriptional regulator compare
AMB_RS19210 -0.5 -2.1 hypothetical protein compare
AMB_RS06630 -0.5 -2.0 hypothetical protein compare
AMB_RS19310 -0.5 -1.3 hypothetical protein compare
AMB_RS00855 -0.4 -2.5 helix-turn-helix domain-containing protein compare
AMB_RS21025 -0.4 -3.5 DUF3422 domain-containing protein compare
AMB_RS15610 -0.4 -2.7 hypothetical protein compare
AMB_RS03470 -0.4 -2.7 enoyl-CoA hydratase compare
AMB_RS17585 -0.4 -2.8 type I secretion system ATPase compare
AMB_RS17995 -0.4 -2.9 hypothetical protein compare
AMB_RS15620 -0.4 -2.3 RluA family pseudouridine synthase compare
AMB_RS03015 -0.4 -2.1 hypothetical protein compare
AMB_RS02675 -0.4 -1.6 YcgN family cysteine cluster protein compare
AMB_RS06755 -0.4 -0.9 hypothetical protein compare
AMB_RS24670 -0.4 -2.7 DUF2813 domain-containing protein compare
AMB_RS01700 -0.4 -1.7 hypothetical protein compare
AMB_RS07555 -0.4 -0.8 DUF1566 domain-containing protein compare
AMB_RS21710 -0.4 -1.8 hypothetical protein compare
AMB_RS17100 -0.4 -1.9 sulfate permease and related transporter compare
AMB_RS02685 -0.4 -3.6 glutamate synthase large subunit compare
AMB_RS12410 -0.4 -2.9 excinuclease ABC subunit UvrA compare
AMB_RS10350 -0.4 -1.2 DNA polymerase III subunit epsilon compare
AMB_RS22770 -0.4 -1.2 radical SAM protein compare
AMB_RS23950 -0.4 -2.4 hemerythrin compare
AMB_RS23555 -0.4 -1.4 HD domain-containing protein compare
AMB_RS10430 -0.4 -2.2 hypothetical protein compare
AMB_RS09990 -0.4 -1.8 hypothetical protein compare
AMB_RS04230 -0.4 -1.0 acyl-CoA thioesterase compare
AMB_RS08320 -0.4 -1.6 Ni,Fe-hydrogenase I large subunit compare
AMB_RS13430 -0.4 -1.3 molecular chaperone TorD compare
AMB_RS04655 -0.4 -1.4 hypothetical protein compare
AMB_RS02650 -0.4 -2.1 uroporphyrinogen-III C-methyltransferase compare
AMB_RS00850 -0.4 -2.2 LD-carboxypeptidase compare
AMB_RS10540 -0.4 -2.3 KR domain-containing protein compare
AMB_RS04630 -0.4 -0.5 tRNA-Met compare
AMB_RS12290 -0.4 -1.3 MBL fold metallo-hydrolase compare
AMB_RS03405 -0.4 -0.5 LysR family transcriptional regulator compare
AMB_RS06005 -0.4 -1.0 hypothetical protein compare
AMB_RS03495 -0.4 -2.5 alpha/beta hydrolase compare
AMB_RS13205 -0.4 -2.7 polyamine ABC transporter ATP-binding protein compare
AMB_RS02445 -0.4 -2.1 hydrolase compare
AMB_RS19340 -0.4 -0.8 EamA family transporter compare
AMB_RS11065 -0.4 -2.2 hypothetical protein compare
AMB_RS05625 -0.4 -1.6 phosphate ABC transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Magnetospirillum magneticum AMB-1 in magnetic pulldown experiments

For magnetic pulldown Iron across organisms