Experiment set1IT077 for Serratia liquefaciens MT49

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Nickel (II) chloride hexahydrate 80 uM, anaerobic

200 most important genes:

  gene name fitness t score description  
IAI46_13260 -5.4 -3.7 FNR family transcription factor compare
IAI46_11930 -3.1 -2.1 AprI/Inh family metalloprotease inhibitor compare
IAI46_00725 -2.6 -2.5 tyrosine recombinase XerC compare
IAI46_18460 -2.5 -6.2 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI46_04935 -2.4 -2.0 exodeoxyribonuclease VII small subunit compare
IAI46_06375 -2.4 -2.0 tRNA-Lys compare
IAI46_12410 -2.3 -2.2 SDR family NAD(P)-dependent oxidoreductase compare
IAI46_20730 -2.1 -3.0 site-specific tyrosine recombinase XerD compare
IAI46_07980 -2.1 -2.6 dCTP deaminase compare
IAI46_25110 -2.0 -4.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI46_00610 -1.9 -2.2 dTDP-glucose 4,6-dehydratase compare
IAI46_24760 -1.9 -4.9 glycosyltransferase compare
IAI46_23090 -1.8 -11.1 glucose-6-phosphate isomerase compare
IAI46_20270 -1.8 -2.2 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI46_00735 -1.8 -7.7 DNA helicase II compare
IAI46_17755 -1.7 -3.6 phosphate acetyltransferase compare
IAI46_17680 -1.7 -2.0 NADH-quinone oxidoreductase subunit NuoH compare
IAI46_10730 -1.6 -2.9 hypothetical protein compare
IAI46_17750 -1.5 -4.2 acetate kinase compare
IAI46_23690 -1.5 -2.3 adenine-specific DNA-methyltransferase compare
IAI46_20455 -1.5 -2.1 RNA pyrophosphohydrolase compare
IAI46_24755 -1.5 -7.6 O-antigen ligase family protein compare
IAI46_25250 -1.5 -3.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI46_17810 -1.5 -7.5 amidophosphoribosyltransferase compare
IAI46_13995 -1.5 -3.4 23S rRNA pseudouridine(2605) synthase RluB compare
IAI46_08610 -1.5 -8.5 formate C-acetyltransferase compare
IAI46_23500 -1.4 -1.5 SlyX family protein compare
IAI46_25195 -1.4 -1.8 phosphate signaling complex protein PhoU compare
IAI46_05520 -1.4 -1.4 transposase compare
IAI46_10935 -1.4 -1.4 hypothetical protein compare
IAI46_08185 -1.4 -4.0 imidazole glycerol phosphate synthase subunit HisF compare
IAI46_06585 -1.4 -2.1 molybdopterin synthase catalytic subunit MoaE compare
IAI46_11220 -1.4 -1.6 peptidase inhibitor I78 family protein compare
IAI46_20670 -1.3 -1.4 Hpt domain-containing protein compare
IAI46_09235 -1.3 -2.7 hypothetical protein compare
IAI46_05350 -1.3 -1.6 ABC transporter ATP-binding protein compare
IAI46_02130 -1.3 -3.8 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
IAI46_19600 -1.2 -3.4 ATP-dependent RNA helicase SrmB compare
IAI46_24985 -1.2 -5.4 DNA polymerase I compare
IAI46_07070 -1.2 -2.4 TetR/AcrR family transcriptional regulator compare
IAI46_13935 -1.2 -1.5 LapA family protein compare
IAI46_12890 -1.2 -1.0 SidA/IucD/PvdA family monooxygenase compare
IAI46_08605 -1.2 -4.5 pyruvate formate lyase 1-activating protein compare
IAI46_08130 -1.1 -1.7 ABC transporter ATP-binding protein compare
IAI46_02940 -1.1 -5.6 phosphoserine phosphatase compare
IAI46_06555 -1.1 -1.2 DUF2132 domain-containing protein compare
IAI46_01815 -1.1 -3.2 transcriptional regulator ArgR compare
IAI46_11260 -1.1 -1.5 Grx4 family monothiol glutaredoxin compare
IAI46_03235 -1.1 -3.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI46_11690 -1.1 -2.5 ATP-dependent dethiobiotin synthetase BioD compare
IAI46_14465 -1.1 -1.6 hypothetical protein compare
IAI46_02835 -1.1 -1.4 tRNA-Leu compare
IAI46_09505 -1.1 -1.3 hypothetical protein compare
IAI46_01955 -1.1 -5.4 polyribonucleotide nucleotidyltransferase compare
IAI46_12160 -1.1 -3.3 hypothetical protein compare
IAI46_13175 -1.0 -1.9 flagellar brake protein compare
IAI46_18525 -1.0 -2.5 DUF2919 domain-containing protein compare
IAI46_17145 -1.0 -1.7 DNA polymerase II compare
IAI46_08685 -1.0 -2.0 cold-shock protein compare
IAI46_06965 -1.0 -2.4 ABC transporter ATP-binding protein compare
IAI46_20900 -1.0 -4.4 phosphoglycerate dehydrogenase compare
IAI46_08635 -1.0 -4.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI46_02135 -1.0 -6.9 anaerobic ribonucleoside-triphosphate reductase compare
IAI46_24645 -1.0 -3.7 6-phosphofructokinase compare
IAI46_05545 -1.0 -1.4 hypothetical protein compare
IAI46_24695 -1.0 -4.6 protein-export chaperone SecB compare
IAI46_12005 -1.0 -1.5 hypothetical protein compare
IAI46_09730 -1.0 -1.6 hypothetical protein compare
IAI46_17000 -1.0 -1.9 citrate lyase acyl carrier protein compare
IAI46_08060 -1.0 -1.5 glycosyltransferase family 4 protein compare
IAI46_15510 -0.9 -2.6 respiratory nitrate reductase subunit gamma compare
IAI46_11335 -0.9 -1.7 DUF1656 domain-containing protein compare
IAI46_11420 -0.9 -2.3 RidA family protein compare
IAI46_09300 -0.9 -1.8 AlpA family phage regulatory protein compare
IAI46_06285 -0.9 -1.0 ADP-forming succinate--CoA ligase subunit beta compare
IAI46_19990 -0.9 -2.8 transcriptional repressor MprA compare
IAI46_10215 -0.9 -1.0 helix-turn-helix transcriptional regulator compare
IAI46_06145 -0.9 -3.7 alpha-D-glucose phosphate-specific phosphoglucomutase compare
IAI46_10735 -0.9 -2.9 DUF1480 family protein compare
IAI46_12105 -0.9 -1.9 LysR family transcriptional regulator compare
IAI46_03255 -0.9 -1.9 peptidylprolyl isomerase SurA compare
IAI46_18770 -0.9 -2.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI46_08455 -0.9 -1.1 DUF1294 domain-containing protein compare
IAI46_14880 -0.9 -1.6 fosfomycin resistance glutathione transferase compare
IAI46_12455 -0.9 -1.2 FCD domain-containing protein compare
IAI46_06570 -0.9 -2.3 molybdenum cofactor biosynthesis protein B compare
IAI46_13110 -0.9 -2.2 L-2-amino-thiazoline-4-carboxylic acid hydrolase compare
IAI46_14870 -0.9 -1.8 DUF4060 family protein compare
IAI46_14060 -0.9 -1.3 YkgJ family cysteine cluster protein compare
IAI46_11980 -0.9 -2.0 helix-turn-helix transcriptional regulator compare
IAI46_14385 -0.9 -1.2 GNAT family N-acetyltransferase compare
IAI46_07830 -0.9 -4.4 molybdopterin molybdotransferase MoeA compare
IAI46_11815 -0.8 -1.9 Asp/Glu racemase compare
IAI46_06565 -0.8 -2.3 GTP 3',8-cyclase MoaA compare
IAI46_04955 -0.8 -2.0 YajQ family cyclic di-GMP-binding protein compare
IAI46_13910 -0.8 -1.6 stress response translation initiation inhibitor YciH compare
IAI46_18035 -0.8 -2.7 endonuclease SmrB compare
IAI46_23660 -0.8 -2.5 nitrite reductase small subunit NirD compare
IAI46_23505 -0.8 -1.8 peptidylprolyl isomerase compare
IAI46_08535 -0.8 -1.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI46_23240 -0.8 -2.5 shikimate dehydrogenase compare
IAI46_06645 -0.8 -1.2 D-2-hydroxyacid dehydrogenase family protein compare
IAI46_07825 -0.8 -2.6 molybdopterin-synthase adenylyltransferase MoeB compare
IAI46_22335 -0.8 -5.1 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI46_09885 -0.8 -2.1 YcfL family protein compare
IAI46_06275 -0.8 -1.2 2-oxoglutarate dehydrogenase E1 component compare
IAI46_15290 -0.8 -1.0 hypothetical protein compare
IAI46_10830 -0.8 -2.9 2-aminoethylphosphonate--pyruvate transaminase compare
IAI46_19450 -0.8 -1.5 nitrogen regulatory protein P-II compare
IAI46_17840 -0.8 -3.0 tRNA pseudouridine(38-40) synthase TruA compare
IAI46_20920 -0.8 -2.7 arginine exporter ArgO compare
IAI46_14680 -0.8 -1.6 hypothetical protein compare
IAI46_12365 -0.7 -1.4 LysR family transcriptional regulator compare
IAI46_11475 -0.7 -1.8 helix-turn-helix domain-containing protein compare
IAI46_07745 -0.7 -2.5 molecular chaperone compare
IAI46_11105 -0.7 -2.8 3-deoxy-7-phosphoheptulonate synthase compare
IAI46_10385 -0.7 -2.1 cupin domain-containing protein compare
IAI46_05370 -0.7 -2.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI46_24590 -0.7 -1.1 septal ring assembly protein ZapB compare
IAI46_25010 -0.7 -4.0 molybdenum cofactor guanylyltransferase MobA compare
IAI46_07755 -0.7 -2.7 fimbrial protein compare
IAI46_13635 -0.7 -2.0 hypothetical protein compare
IAI46_10285 -0.7 -1.2 peptide chain release factor N(5)-glutamine methyltransferase compare
IAI46_24690 -0.7 -3.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
IAI46_10205 -0.7 -1.4 pseudouridine-5'-phosphate glycosidase compare
IAI46_11080 -0.7 -1.9 ABC transporter substrate-binding protein compare
IAI46_11855 -0.7 -1.4 sulfite exporter TauE/SafE family protein compare
IAI46_02875 -0.7 -3.1 peptide chain release factor 3 compare
IAI46_14510 -0.7 -1.7 YcgL domain-containing protein compare
IAI46_24945 -0.7 -1.3 ribosome-dependent GTPase TypA compare
IAI46_15485 -0.7 -2.7 molecular chaperone compare
IAI46_19475 -0.7 -5.4 phosphoribosylformylglycinamidine synthase compare
IAI46_15010 -0.7 -2.4 hypothetical protein compare
IAI46_20015 -0.7 -1.4 thioredoxin TrxC compare
IAI46_04265 -0.7 -2.1 amino acid ABC transporter ATP-binding protein compare
IAI46_01360 -0.7 -4.3 phosphoribosylamine--glycine ligase compare
IAI46_09830 -0.7 -2.4 PTS glucose transporter subunit IIBC compare
IAI46_08640 -0.7 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
IAI46_08960 -0.7 -1.2 hypothetical protein compare
IAI46_13980 -0.7 -1.8 protease SohB compare
IAI46_10585 -0.7 -2.0 hypothetical protein compare
IAI46_18540 -0.7 -2.0 N-acetylmuramoyl-L-alanine amidase AmiA compare
IAI46_15515 -0.7 -2.5 nitrate reductase molybdenum cofactor assembly chaperone compare
IAI46_05175 -0.7 -1.1 50S ribosomal protein L36 compare
IAI46_07810 -0.6 -1.8 transcriptional regulator CynR compare
IAI46_14370 -0.6 -1.7 hypothetical protein compare
IAI46_14530 -0.6 -1.9 ribonuclease D compare
IAI46_13975 -0.6 -1.8 YciN family protein compare
IAI46_14590 -0.6 -2.3 leucine-rich repeat domain-containing protein compare
IAI46_14815 -0.6 -1.6 PTS mannose/fructose/sorbose transporter subunit IIC compare
IAI46_01960 -0.6 -3.7 lipoprotein NlpI compare
IAI46_22855 -0.6 -1.4 DUF1471 domain-containing protein compare
IAI46_10395 -0.6 -1.2 two-component system response regulator PhoP compare
IAI46_14010 -0.6 -2.0 threonylcarbamoyl-AMP synthase compare
IAI46_14650 -0.6 -0.9 zinc ribbon domain-containing protein compare
IAI46_21470 -0.6 -1.6 oxidative damage protection protein compare
IAI46_23700 -0.6 -2.1 3-dehydroquinate synthase compare
IAI46_25160 -0.6 -1.7 F0F1 ATP synthase subunit epsilon compare
IAI46_08385 -0.6 -1.1 putrescine ABC transporter permease PotI compare
IAI46_11390 -0.6 -1.3 4-hydroxy-tetrahydrodipicolinate synthase compare
IAI46_08300 -0.6 -2.2 DNA-binding transcriptional repressor DeoR compare
IAI46_18885 -0.6 -2.5 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI46_05335 -0.6 -1.3 co-chaperone YbbN compare
IAI46_09310 -0.6 -1.8 hypothetical protein compare
IAI46_09045 -0.6 -1.0 pyrimidine utilization protein B compare
IAI46_19570 -0.6 -2.5 SoxR-reducing system protein RseC compare
IAI46_15525 -0.6 -4.1 nitrate reductase subunit alpha compare
IAI46_08190 -0.6 -1.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI46_10115 -0.6 -0.8 FadR family transcriptional regulator compare
IAI46_03840 -0.6 -1.8 recombinase RecA compare
IAI46_02415 -0.6 -1.1 hypothetical protein compare
IAI46_11630 -0.6 -1.4 LysR family transcriptional regulator compare
IAI46_10465 -0.6 -2.5 Mig-14 family protein compare
IAI46_17560 -0.6 -3.1 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
IAI46_19360 -0.6 -1.5 Fe-S cluster assembly transcriptional regulator IscR compare
IAI46_21325 -0.6 -1.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI46_23630 -0.6 -0.6 PTS lactose/cellobiose transporter subunit IIA compare
IAI46_09825 -0.6 -1.7 metal-dependent hydrolase compare
IAI46_19280 -0.6 -1.4 cytoskeleton protein RodZ compare
IAI46_02205 -0.6 -1.8 hypothetical protein compare
IAI46_08045 -0.6 -0.9 hypothetical protein compare
IAI46_10230 -0.6 -2.0 TetR/AcrR family transcriptional regulator compare
IAI46_13425 -0.6 -2.0 VOC family protein compare
IAI46_24970 -0.6 -4.7 oxygen-independent coproporphyrinogen III oxidase compare
IAI46_15295 -0.6 -1.1 hypothetical protein compare
IAI46_16060 -0.6 -1.1 flagellar transcriptional regulator FlhD compare
IAI46_19180 -0.6 -1.4 helix-turn-helix transcriptional regulator compare
IAI46_17595 -0.6 -1.5 DUF1097 domain-containing protein compare
IAI46_18425 -0.6 -1.1 DUF3820 family protein compare
IAI46_10880 -0.6 -1.7 iron/manganese ABC transporter permease subunit YfeC compare
IAI46_15850 -0.6 -0.8 flagellar assembly protein FliH compare
IAI46_09670 -0.6 -1.7 hypothetical protein compare
IAI46_15080 -0.6 -1.4 hypothetical protein compare
IAI46_13895 -0.6 -1.4 DeoR/GlpR transcriptional regulator compare
IAI46_24705 -0.6 -1.3 rhodanese-like domain-containing protein compare
IAI46_04860 -0.6 -1.2 response regulator transcription factor compare
IAI46_01365 -0.6 -4.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI46_16485 -0.6 -2.7 glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase compare
IAI46_05015 -0.6 -2.3 ATP-dependent protease ATP-binding subunit ClpX compare
IAI46_10875 -0.6 -1.7 metal ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Serratia liquefaciens MT49 in stress experiments

For stress Nickel (II) chloride hexahydrate across organisms