Experiment set1IT077 for Serratia liquefaciens MT49

Compare to:

Nickel (II) chloride hexahydrate 80 uM, anaerobic

200 most detrimental genes:

  gene name fitness t score description  
IAI46_20215 +1.5 4.7 molecular chaperone Skp compare
IAI46_03600 +1.4 12.8 GTP diphosphokinase compare
IAI46_24465 +1.4 5.9 HTH-type transcriptional repressor FabR compare
IAI46_19580 +1.3 2.9 anti-sigma-E factor RseA compare
IAI46_05905 +1.3 3.1 lipoyl(octanoyl) transferase LipB compare
IAI46_05385 +1.1 1.8 peptidylprolyl isomerase B compare
IAI46_19915 +1.0 1.9 DUF1289 domain-containing protein compare
IAI46_16105 +1.0 3.5 4-hydroxy-2-oxovalerate aldolase compare
IAI46_03190 +1.0 7.2 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI46_09425 +1.0 3.2 hypothetical protein compare
IAI46_19765 +1.0 1.6 hypothetical protein compare
IAI46_01120 +0.9 4.8 NAD(P)H-flavin reductase compare
IAI46_23775 +0.9 3.9 plasmid stabilization protein compare
IAI46_21275 +0.9 2.5 hypoxanthine phosphoribosyltransferase compare
IAI46_09555 +0.9 3.9 hypothetical protein compare
IAI46_03195 +0.9 7.6 carbamoyl-phosphate synthase large subunit compare
IAI46_12615 +0.9 2.2 hypothetical protein compare
IAI46_02275 +0.9 4.8 aspartate carbamoyltransferase compare
IAI46_19820 +0.8 2.8 N-acetyltransferase compare
IAI46_12305 +0.8 2.1 hypothetical protein compare
IAI46_04965 +0.8 4.1 protoheme IX farnesyltransferase compare
IAI46_06155 +0.8 1.5 DUF3861 domain-containing protein compare
IAI46_15965 +0.8 3.1 flagellar basal body P-ring formation protein FlgA compare
IAI46_12080 +0.8 2.8 amino acid ABC transporter ATP-binding protein compare
IAI46_03025 +0.8 3.2 thr operon leader peptide compare
IAI46_13970 +0.8 1.5 type I DNA topoisomerase compare
IAI46_12725 +0.8 1.6 TetR/AcrR family transcriptional regulator compare
IAI46_23915 +0.8 4.2 glycerol-3-phosphate dehydrogenase compare
IAI46_00625 +0.8 4.4 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI46_22260 +0.8 1.6 phage holin family protein compare
IAI46_08945 +0.7 2.4 FtsH protease modulator YccA compare
IAI46_07625 +0.7 1.2 hypothetical protein compare
IAI46_09340 +0.7 3.3 hypothetical protein compare
IAI46_00620 +0.7 3.3 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI46_12575 +0.7 3.1 protein deglycase HchA compare
IAI46_15150 +0.7 0.8 hypothetical protein compare
IAI46_18530 +0.7 2.6 YgiW/YdeI family stress tolerance OB fold protein compare
IAI46_12395 +0.7 2.4 alpha/beta hydrolase compare
IAI46_04980 +0.7 5.2 cytochrome o ubiquinol oxidase subunit I compare
IAI46_00605 +0.7 1.4 UDP-N-acetyl-D-mannosamine dehydrogenase compare
IAI46_15900 +0.7 1.5 flagellar type III secretion system protein FliR compare
IAI46_06300 +0.7 3.0 cytochrome d ubiquinol oxidase subunit II compare
IAI46_13135 +0.7 3.3 inorganic phosphate transporter compare
IAI46_14635 +0.7 2.3 YebC/PmpR family DNA-binding transcriptional regulator compare
IAI46_16355 +0.7 2.3 1,2-phenylacetyl-CoA epoxidase subunit B compare
IAI46_08895 +0.6 2.7 YccF domain-containing protein compare
IAI46_01080 +0.6 2.0 Sec-independent protein translocase subunit TatA compare
IAI46_09525 +0.6 2.8 type II toxin-antitoxin system YafO family toxin compare
IAI46_10500 +0.6 1.9 hypothetical protein compare
IAI46_11610 +0.6 2.6 LysR family transcriptional regulator compare
IAI46_19735 +0.6 2.5 histidine kinase compare
IAI46_09145 +0.6 1.8 aldehyde dehydrogenase (NADP(+)) compare
IAI46_15100 +0.6 2.2 hypothetical protein compare
IAI46_11795 +0.6 1.3 xanthine dehydrogenase accessory protein XdhC compare
IAI46_10455 +0.6 1.8 23S rRNA pseudouridine(2457) synthase RluE compare
IAI46_16515 +0.6 2.5 diacylglycerol kinase compare
IAI46_02445 +0.6 2.5 hypothetical protein compare
IAI46_20660 +0.6 1.3 chaperone modulator CbpM compare
IAI46_00685 +0.6 4.4 uroporphyrinogen-III C-methyltransferase compare
IAI46_13620 +0.6 2.4 hypothetical protein compare
IAI46_17885 +0.6 1.7 tripartite tricarboxylate transporter TctB family protein compare
IAI46_02050 +0.6 2.9 YhbP family protein compare
IAI46_15190 +0.6 1.0 hypothetical protein compare
IAI46_06985 +0.6 2.1 HNH nuclease family protein compare
IAI46_08530 +0.6 1.8 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI46_08835 +0.6 2.0 intermembrane transport protein PqiB compare
IAI46_21230 +0.6 2.7 two-component system sensor histidine kinase QseC compare
IAI46_09570 +0.6 1.0 hypothetical protein compare
IAI46_12320 +0.6 2.4 sigma-54-dependent Fis family transcriptional regulator compare
IAI46_11160 +0.6 1.9 Fe-S cluster assembly protein SufD compare
IAI46_04970 +0.6 2.3 cytochrome o ubiquinol oxidase subunit IV compare
IAI46_02890 +0.6 1.4 stress-response protein compare
IAI46_10760 +0.6 1.7 spore coat protein U domain-containing protein compare
IAI46_21240 +0.6 2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
IAI46_24700 +0.6 1.7 glutaredoxin 3 compare
IAI46_19740 +0.6 2.6 DEAD/DEAH box helicase family protein compare
IAI46_05935 +0.6 1.6 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
IAI46_09380 +0.6 3.4 hypothetical protein compare
IAI46_12290 +0.6 2.6 succinylglutamate desuccinylase/aspartoacylase family protein compare
IAI46_04455 +0.6 1.0 DUF1471 domain-containing protein compare
IAI46_15090 +0.6 1.8 hypothetical protein compare
IAI46_09375 +0.6 0.5 TraR/DksA family transcriptional regulator compare
IAI46_09400 +0.6 1.1 hypothetical protein compare
IAI46_04380 +0.6 2.8 NADH:ubiquinone reductase (Na(+)-transporting) subunit E compare
IAI46_14930 +0.6 1.5 peptidoglycan-binding protein LysM compare
IAI46_17065 +0.5 1.7 ABC transporter ATP-binding protein compare
IAI46_04975 +0.5 2.9 cytochrome o ubiquinol oxidase subunit III compare
IAI46_10190 +0.5 1.5 beta-galactosidase subunit beta compare
IAI46_08135 +0.5 2.0 DUF4422 domain-containing protein compare
IAI46_00615 +0.5 2.2 glucose-1-phosphate thymidylyltransferase RfbA compare
IAI46_17710 +0.5 1.5 NADH-quinone oxidoreductase subunit A compare
IAI46_08055 +0.5 1.8 hypothetical protein compare
IAI46_08325 +0.5 2.3 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase compare
IAI46_02885 +0.5 1.0 DUF1328 domain-containing protein compare
IAI46_02475 +0.5 2.6 hypothetical protein compare
IAI46_12740 +0.5 1.2 LysR family transcriptional regulator compare
IAI46_10800 +0.5 2.8 carboxy terminal-processing peptidase compare
IAI46_13215 +0.5 1.9 Gfo/Idh/MocA family oxidoreductase compare
IAI46_13585 +0.5 1.2 hypothetical protein compare
IAI46_12925 +0.5 2.3 alpha-glucosidase compare
IAI46_13205 +0.5 1.2 carbohydrate ABC transporter permease compare
IAI46_16365 +0.5 0.9 phenylacetate-CoA oxygenase subunit PaaJ compare
IAI46_09355 +0.5 1.2 hypothetical protein compare
IAI46_11425 +0.5 2.6 phosphotransferase compare
IAI46_10905 +0.5 2.0 gluconate 2-dehydrogenase subunit 3 family protein compare
IAI46_15005 +0.5 1.7 hypothetical protein compare
IAI46_22995 +0.5 1.8 CsbD family protein compare
IAI46_21675 +0.5 2.1 aminoimidazole riboside kinase compare
IAI46_12940 +0.5 1.7 carbohydrate ABC transporter permease compare
IAI46_22405 +0.5 1.7 BolA family iron metabolism protein IbaG compare
IAI46_11380 +0.5 1.0 pyridoxal kinase PdxY compare
IAI46_01940 +0.5 0.8 30S ribosome-binding factor RbfA compare
IAI46_17130 +0.5 1.5 helix-turn-helix transcriptional regulator compare
IAI46_08505 +0.5 1.5 cold shock-like protein CspD compare
IAI46_12260 +0.5 1.7 LysR family transcriptional regulator compare
IAI46_12130 +0.5 1.5 VOC family protein compare
IAI46_09480 +0.5 1.9 hypothetical protein compare
IAI46_22135 +0.5 1.0 G/U mismatch-specific DNA glycosylase compare
IAI46_10600 +0.5 1.7 beta-lactamase family protein compare
IAI46_11225 +0.5 3.2 cyclopropane fatty acyl phospholipid synthase compare
IAI46_06040 +0.5 2.1 tRNA-Met compare
IAI46_23285 +0.5 3.1 large-conductance mechanosensitive channel protein MscL compare
IAI46_01695 +0.5 1.4 DUF1471 domain-containing protein compare
IAI46_00700 +0.5 3.1 class I adenylate cyclase compare
IAI46_13990 +0.5 1.9 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
IAI46_12655 +0.5 1.2 LysR family transcriptional regulator compare
IAI46_07650 +0.5 2.1 common pilus major fimbrillin subunit EcpA compare
IAI46_22550 +0.5 2.5 glycine dehydrogenase compare
IAI46_15115 +0.5 1.5 hypothetical protein compare
IAI46_19615 +0.5 1.8 autonomous glycyl radical cofactor GrcA compare
IAI46_09535 +0.5 2.5 hypothetical protein compare
IAI46_12330 +0.5 0.9 GNAT family N-acetyltransferase compare
IAI46_24845 +0.5 3.3 orotate phosphoribosyltransferase compare
IAI46_19315 +0.5 2.8 enhanced serine sensitivity protein SseB compare
IAI46_18325 +0.5 2.1 isochorismate synthase compare
IAI46_20820 +0.5 1.7 hypothetical protein compare
IAI46_07410 +0.5 1.6 helix-turn-helix transcriptional regulator compare
IAI46_09165 +0.5 1.3 FAD-dependent oxidoreductase compare
IAI46_21630 +0.5 2.4 SMI1/KNR4 family protein compare
IAI46_01070 +0.5 0.6 SCP2 domain-containing protein compare
IAI46_06295 +0.5 2.5 cytochrome ubiquinol oxidase subunit I compare
IAI46_16200 +0.5 2.0 DMT family transporter compare
IAI46_15585 +0.5 1.7 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI46_22250 +0.5 1.5 DUF1090 domain-containing protein compare
IAI46_15755 +0.5 2.0 type II toxin-antitoxin system HicB family antitoxin compare
IAI46_09325 +0.5 2.1 recombinase RecT compare
IAI46_21495 +0.5 1.1 hypothetical protein compare
IAI46_21620 +0.5 1.8 hypothetical protein compare
IAI46_15105 +0.5 1.2 phage holin, lambda family compare
IAI46_15020 +0.5 1.5 hypothetical protein compare
IAI46_10850 +0.5 2.2 hexitol phosphatase HxpB compare
IAI46_16140 +0.5 1.4 hypothetical protein compare
IAI46_10210 +0.5 2.2 NupC/NupG family nucleoside CNT transporter compare
IAI46_07875 +0.5 0.8 hypothetical protein compare
IAI46_16320 +0.5 1.9 VOC family metalloprotein YjdN compare
IAI46_23445 +0.5 2.4 bacterioferritin compare
IAI46_06270 +0.4 1.9 succinate dehydrogenase iron-sulfur subunit compare
IAI46_04735 +0.4 2.0 D-lyxose/D-mannose family sugar isomerase compare
IAI46_10165 +0.4 1.3 universal stress protein compare
IAI46_10295 +0.4 1.5 tetratricopeptide repeat-containing protein compare
IAI46_07595 +0.4 1.5 aldolase compare
IAI46_15355 +0.4 2.0 leucyl aminopeptidase family protein compare
IAI46_13355 +0.4 2.0 2-hydroxyacid dehydrogenase compare
IAI46_02265 +0.4 0.6 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI46_09985 +0.4 1.0 RNA polymerase-binding protein DksA compare
IAI46_09995 +0.4 0.8 DNA polymerase III subunit theta compare
IAI46_14200 +0.4 1.8 oligopeptide ABC transporter permease OppB compare
IAI46_07115 +0.4 1.5 cysteine hydrolase compare
IAI46_19110 +0.4 1.8 GNAT family N-acetyltransferase compare
IAI46_11965 +0.4 2.0 hypothetical protein compare
IAI46_13335 +0.4 1.4 FMN-dependent NADH-azoreductase compare
IAI46_15315 +0.4 1.0 succinylglutamate desuccinylase compare
IAI46_20515 +0.4 1.9 helix-turn-helix transcriptional regulator compare
IAI46_08140 +0.4 2.3 UDP-galactopyranose mutase compare
IAI46_12250 +0.4 1.4 substrate-binding domain-containing protein compare
IAI46_05695 +0.4 1.7 toxin compare
IAI46_20755 +0.4 1.9 protein YgfX compare
IAI46_14955 +0.4 2.4 hypothetical protein compare
IAI46_00640 +0.4 1.7 ECA oligosaccharide polymerase compare
IAI46_18505 +0.4 1.9 sulfate/thiosulfate ABC transporter permease CysT compare
IAI46_18725 +0.4 1.7 chorismate mutase compare
IAI46_04805 +0.4 0.5 hypothetical protein compare
IAI46_19985 +0.4 1.9 L-valine transporter subunit YgaH compare
IAI46_21210 +0.4 1.9 RNA polymerase-binding protein DksA compare
IAI46_15835 +0.4 1.0 flagellar hook-basal body complex protein FliE compare
IAI46_13715 +0.4 1.5 antitermination protein compare
IAI46_13765 +0.4 1.2 hypothetical protein compare
IAI46_16695 +0.4 2.2 ABC transporter ATP-binding protein compare
IAI46_13575 +0.4 1.8 C40 family peptidase compare
IAI46_10090 +0.4 1.0 sugar ABC transporter substrate-binding protein compare
IAI46_13300 +0.4 1.2 two-component system response regulator RstA compare
IAI46_09650 +0.4 0.6 YeeE/YedE family protein compare
IAI46_08015 +0.4 1.1 protein tyrosine phosphatase compare
IAI46_01980 +0.4 2.3 sulfurtransferase-like selenium metabolism protein YedF compare
IAI46_22450 +0.4 1.2 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI46_09500 +0.4 1.6 hypothetical protein compare
IAI46_12275 +0.4 1.5 ABC transporter permease subunit compare
IAI46_11785 +0.4 1.2 xanthine dehydrogenase small subunit compare
IAI46_12880 +0.4 1.5 MFS transporter compare
IAI46_11635 +0.4 1.6 beta-lactamase family protein compare


Specific Phenotypes

None in this experiment

For Serratia liquefaciens MT49 in stress experiments

For stress Nickel (II) chloride hexahydrate across organisms