Experiment set1IT077 for Enterobacter asburiae PDN3

Compare to:

M9 with sucrose; no stress control

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_4153 -5.7 -3.3 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_4422 -4.9 -9.8 argininosuccinate lyase compare
EX28DRAFT_0972 -4.7 -2.9 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_4421 -4.7 -1.2 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_3667 -4.7 -5.1 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_2916 -4.6 -14.8 diaminopimelate decarboxylase compare
EX28DRAFT_2851 -4.5 -5.0 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_4156 -4.2 -2.6 ribulose-phosphate 3-epimerase compare
EX28DRAFT_3046 -4.2 -10.0 cystathionine beta-lyase, bacterial compare
EX28DRAFT_3668 -4.0 -10.2 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_0534 -3.9 -7.3 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_0535 -3.9 -7.1 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_0537 -3.9 -14.6 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_2701 -3.9 -11.2 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_2650 -3.8 -11.4 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_4331 -3.7 -12.3 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_2853 -3.6 -8.8 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_3669 -3.5 -6.3 3-isopropylmalate dehydrogenase compare
EX28DRAFT_0092 -3.5 -1.8 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_2265 -3.4 -1.8 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_4443 -3.4 -14.0 dihydroxy-acid dehydratase compare
EX28DRAFT_2027 -3.4 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_0536 -3.3 -3.7 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_4493 -3.3 -5.6 Transcriptional regulator compare
EX28DRAFT_0533 -3.3 -6.1 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_0538 -3.3 -10.0 histidinol-phosphate aminotransferase compare
EX28DRAFT_2252 -3.3 -2.8 TolA protein compare
EX28DRAFT_4446 -3.2 -9.4 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_2893 -3.2 -10.7 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_0046 -3.2 -3.0 shikimate dehydrogenase compare
EX28DRAFT_2699 -3.2 -12.4 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_0934 -3.1 -9.8 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_3670 -3.1 -7.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_3224 -3.1 -7.8 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_0540 -3.1 -7.7 ATP phosphoribosyltransferase compare
EX28DRAFT_0933 -3.1 -11.0 tryptophan synthase, beta subunit compare
EX28DRAFT_3614 -3.1 -12.4 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_3710 -3.1 -8.0 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_2945 -3.1 -1.5 tyrosine recombinase XerD compare
EX28DRAFT_4419 -3.0 -3.1 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_4418 -3.0 -9.7 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_3711 -3.0 -1.5 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_0932 -2.9 -5.2 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_0292 -2.9 -3.8 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_4444 -2.9 -8.3 threonine ammonia-lyase, biosynthetic, long form compare
EX28DRAFT_2548 -2.8 -4.5 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_4411 -2.7 -8.9 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_0539 -2.7 -8.2 histidinol dehydrogenase compare
EX28DRAFT_4445 -2.7 -5.2 Transcriptional regulator compare
EX28DRAFT_0936 -2.7 -6.8 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_2585 -2.6 -1.7 pyrroline-5-carboxylate reductase compare
EX28DRAFT_0284 -2.6 -9.5 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_2651 -2.6 -6.0 glutamate 5-kinase compare
EX28DRAFT_2917 -2.6 -3.8 Transcriptional regulator compare
EX28DRAFT_0214 -2.5 -5.5 cysteine synthase A compare
EX28DRAFT_3616 -2.5 -3.4 threonine synthase compare
EX28DRAFT_4442 -2.4 -6.2 branched-chain amino acid aminotransferase, group I compare
EX28DRAFT_2846 -2.4 -5.7 adenylyl-sulfate kinase compare
EX28DRAFT_3646 -2.4 -6.2 4-hydroxythreonine-4-phosphate dehydrogenase compare
EX28DRAFT_2852 -2.3 -12.6 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_2272 -2.3 -7.7 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_0228 -2.3 -1.8 tRNA compare
EX28DRAFT_0935 -2.2 -5.2 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_3647 -2.2 -4.6 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_2531 -2.2 -3.2 endopeptidase La compare
EX28DRAFT_2849 -2.2 -3.9 uroporphyrin-III C-methyltransferase compare
EX28DRAFT_3671 -2.2 -3.8 RNA compare
EX28DRAFT_3461 -2.2 -4.3 ornithine carbamoyltransferase compare
EX28DRAFT_4544 -2.1 -2.0 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_2848 -2.1 -8.8 sulfate adenylyltransferase, small subunit compare
EX28DRAFT_2240 -2.1 -2.9 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_2245 -2.0 -7.0 quinolinate synthetase (EC 2.5.1.72) compare
EX28DRAFT_2270 -2.0 -1.1 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_3311 -1.9 -1.4 ribosomal protein L11 methyltransferase compare
EX28DRAFT_2847 -1.9 -9.6 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_2845 -1.9 -1.8 Protein of unknown function (DUF3561) compare
EX28DRAFT_0286 -1.9 -1.6 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_4478 -1.8 -3.6 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_2873 -1.8 -1.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1123 -1.8 -6.5 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_1124 -1.7 -8.8 sucrose-6-phosphate hydrolase compare
EX28DRAFT_3879 -1.7 -4.4 Glycosyltransferase compare
EX28DRAFT_0374 -1.7 -1.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2250 -1.7 -2.8 peptidoglycan-associated lipoprotein compare
EX28DRAFT_1293 -1.7 -1.0 hypothetical protein compare
EX28DRAFT_1841 -1.7 -1.0 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_4386 -1.7 -2.2 Signal transduction histidine kinase compare
EX28DRAFT_0392 -1.7 -1.4 hypothetical protein compare
EX28DRAFT_0922 -1.7 -2.4 TonB family C-terminal domain compare
EX28DRAFT_3282 -1.7 -1.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3613 -1.6 -5.0 RNA compare
EX28DRAFT_2043 -1.6 -6.5 transcriptional regulator, AsnC family compare
EX28DRAFT_2702 -1.6 -4.5 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_1050 -1.6 -2.8 luciferase family oxidoreductase, group 1 compare
EX28DRAFT_0111 -1.6 -2.2 FeS cluster assembly scaffold IscU compare
EX28DRAFT_3137 -1.6 -1.4 Predicted transcriptional regulators compare
EX28DRAFT_0291 -1.6 -2.7 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_1620 -1.6 -1.5 hypothetical protein compare
EX28DRAFT_3401 -1.5 -1.6 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_4170 -1.5 -5.6 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_1396 -1.5 -1.1 Amidases related to nicotinamidase compare
EX28DRAFT_0321 -1.5 -0.9 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_2425 -1.5 -1.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2282 -1.5 -2.2 K+-transporting ATPase, C subunit compare
EX28DRAFT_3883 -1.4 -1.6 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_0778 -1.4 -0.9 hypothetical protein compare
EX28DRAFT_1740 -1.4 -0.9 Phosphotransferase system cellobiose-specific component IIA compare
EX28DRAFT_4350 -1.4 -1.0 nitrogen regulation protein NR(I) compare
EX28DRAFT_0065 -1.3 -1.2 thioredoxin compare
EX28DRAFT_1122 -1.3 -4.4 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_0434 -1.3 -1.2 hypothetical protein compare
EX28DRAFT_3275 -1.3 -8.7 Glutamate synthase domain 2 compare
EX28DRAFT_3566 -1.3 -2.3 Uncharacterized conserved protein compare
EX28DRAFT_0494 -1.3 -1.1 Protein-tyrosine-phosphatase compare
EX28DRAFT_4347 -1.3 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3777 -1.3 -1.7 transcriptional antiterminator, Rof compare
EX28DRAFT_2996 -1.2 -1.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1039 -1.2 -1.6 Sortase and related acyltransferases compare
EX28DRAFT_0623 -1.2 -2.2 Bacterial flagellin N-terminal helical region/Bacterial flagellin C-terminal helical region compare
EX28DRAFT_0921 -1.2 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0545 -1.2 -1.7 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_0190 -1.2 -1.0 transcriptional regulator, Spx/MgsR family compare
EX28DRAFT_2075 -1.2 -2.2 type II secretion system protein H compare
EX28DRAFT_4515 -1.2 -1.1 hypothetical protein compare
EX28DRAFT_0706 -1.2 -1.6 Entner-Doudoroff aldolase compare
EX28DRAFT_2541 -1.1 -1.0 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_0977 -1.1 -1.4 phage shock protein B compare
EX28DRAFT_4297 -1.1 -1.0 cell division ATP-binding protein FtsE compare
EX28DRAFT_0331 -1.1 -1.7 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_3276 -1.1 -3.5 glutamate synthase small subunit family protein, proteobacterial compare
EX28DRAFT_3214 -1.1 -1.0 RNA compare
EX28DRAFT_0399 -1.1 -4.5 Transcriptional regulator compare
EX28DRAFT_0970 -1.0 -1.7 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_0469 -1.0 -2.0 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
EX28DRAFT_1772 -1.0 -1.4 methionine-R-sulfoxide reductase compare
EX28DRAFT_4420 -1.0 -1.0 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_4299 -1.0 -1.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
EX28DRAFT_0272 -1.0 -1.2 phosphohistidine phosphatase, SixA compare
EX28DRAFT_4452 -1.0 -1.5 thioredoxin compare
EX28DRAFT_1121 -1.0 -1.5 Sugar kinases, ribokinase family compare
EX28DRAFT_0693 -1.0 -1.0 DNA-binding regulatory protein, YebC/PmpR family compare
EX28DRAFT_0725 -1.0 -1.1 Activator of osmoprotectant transporter ProP compare
EX28DRAFT_2655 -1.0 -2.5 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins compare
EX28DRAFT_1497 -1.0 -1.0 hypothetical protein compare
EX28DRAFT_3645 -1.0 -1.4 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_2225 -1.0 -3.7 3-carboxymuconate cyclase compare
EX28DRAFT_0593 -1.0 -5.4 DNA-methyltransferase (dcm) compare
EX28DRAFT_2546 -1.0 -4.5 2-dehydropantoate 2-reductase compare
EX28DRAFT_2371 -1.0 -1.8 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
EX28DRAFT_3259 -1.0 -2.8 Predicted P-loop-containing kinase compare
EX28DRAFT_0001 -1.0 -1.4 Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain compare
EX28DRAFT_1236 -1.0 -1.8 Transcriptional regulator compare
EX28DRAFT_0531 -0.9 -3.9 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_0764 -0.9 -1.8 fatty acid metabolism transcriptional regulator FadR compare
EX28DRAFT_1719 -0.9 -0.8 integration host factor, alpha subunit compare
EX28DRAFT_0071 -0.9 -5.6 L-aspartate oxidase (EC 1.4.3.16) compare
EX28DRAFT_0068 -0.9 -0.8 autonomous glycyl radical cofactor GrcA compare
EX28DRAFT_1946 -0.9 -1.0 Transcriptional regulators compare
EX28DRAFT_1031 -0.9 -0.7 Protein of unknown function (DUF2566) compare
EX28DRAFT_1414 -0.9 -0.9 phenylacetate degradation probable enoyl-CoA hydratase paaB compare
EX28DRAFT_2271 -0.9 -2.2 hypothetical protein compare
EX28DRAFT_2974 -0.9 -3.3 transketolase, bacterial and yeast compare
EX28DRAFT_4349 -0.9 -1.1 hypothetical protein compare
EX28DRAFT_3675 -0.9 -4.0 transcriptional regulator, LacI family compare
EX28DRAFT_0058 -0.9 -2.5 23S compare
EX28DRAFT_0858 -0.9 -3.6 formyltetrahydrofolate deformylase compare
EX28DRAFT_1895 -0.9 -2.9 Histidinol phosphatase and related hydrolases of the PHP family compare
EX28DRAFT_3987 -0.9 -4.1 DNA replication and repair protein RecF compare
EX28DRAFT_2400 -0.9 -0.5 Cold shock proteins compare
EX28DRAFT_3754 -0.8 -0.4 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_1986 -0.8 -0.5 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_0219 -0.8 -2.1 Predicted Na+-dependent transporter compare
EX28DRAFT_1527 -0.8 -1.9 hypothetical protein compare
EX28DRAFT_0274 -0.8 -1.9 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific compare
EX28DRAFT_1059 -0.8 -1.2 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog compare
EX28DRAFT_3740 -0.8 -2.5 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components compare
EX28DRAFT_1690 -0.8 -2.9 hypothetical protein compare
EX28DRAFT_2938 -0.8 -1.2 tRNA compare
EX28DRAFT_4271 -0.8 -0.6 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_3728 -0.8 -1.4 L-aspartate 1-decarboxylase (EC 4.1.1.11) compare
EX28DRAFT_4440 -0.8 -3.0 acetolactate synthase, large subunit (EC 2.2.1.6) compare
EX28DRAFT_3849 -0.8 -1.4 PTS system, mannitol-specific IIC component compare
EX28DRAFT_0783 -0.8 -1.6 ABC-type phosphate/phosphonate transport system, periplasmic component compare
EX28DRAFT_1530 -0.8 -0.6 hypothetical protein compare
EX28DRAFT_0132 -0.8 -1.5 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_3901 -0.8 -3.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_3941 -0.8 -1.5 Phosphotransferase system cellobiose-specific component IIA compare
EX28DRAFT_3058 -0.8 -1.4 Signal transduction histidine kinase compare
EX28DRAFT_0901 -0.8 -0.8 hypothetical protein compare
EX28DRAFT_1717 -0.8 -1.7 Glutathione peroxidase compare
EX28DRAFT_1508 -0.8 -1.3 Membrane transporters of cations and cationic drugs compare
EX28DRAFT_1330 -0.8 -1.3 hypothetical protein compare
EX28DRAFT_3073 -0.7 -2.2 type I secretion outer membrane protein, TolC family compare
EX28DRAFT_2037 -0.7 -0.9 DMSO reductase, iron-sulfur subunit compare
EX28DRAFT_4380 -0.7 -0.6 Protein of unknown function (DUF1471) compare
EX28DRAFT_1131 -0.7 -1.0 hypothetical protein compare
EX28DRAFT_3730 -0.7 -3.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
EX28DRAFT_1347 -0.7 -2.0 transcriptional regulator, DeoR family compare
EX28DRAFT_0081 -0.7 -3.0 DNA replication and repair protein RecO compare
EX28DRAFT_2424 -0.7 -2.4 transcriptional regulator, TetR family compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in no stress control experiments

For no stress control Sucrose across organisms