Experiment set1IT076 for Magnetospirillum magneticum AMB-1

Compare to:

without_iron2

200 most important genes:

  gene name fitness t score description  
AMB_RS14175 -3.5 -3.2 COQ9 family protein compare
AMB_RS03205 -2.3 -2.8 DNA recombination/repair protein RecA compare
AMB_RS22800 -1.9 -3.6 glutathione synthase compare
AMB_RS22325 -1.8 -10.1 4Fe-4S binding domain-containing protein compare
AMB_RS22315 -1.8 -8.0 membrane protein compare
AMB_RS21290 -1.8 -2.3 DUF4139 domain-containing protein compare
AMB_RS15295 -1.7 -3.0 iron donor protein CyaY compare
AMB_RS11740 -1.6 -12.0 ubiquinone-binding protein compare
AMB_RS01190 -1.5 -6.3 UbiD family decarboxylase compare
AMB_RS22235 -1.5 -3.4 RNase adaptor protein RapZ compare
AMB_RS19790 -1.5 -4.9 NAD(P)-dependent oxidoreductase compare
AMB_RS02725 -1.5 -2.1 phospholipid carrier-dependent glycosyltransferase compare
AMB_RS11195 -1.4 -1.7 sulfate adenylyltransferase subunit 2 compare
AMB_RS03045 -1.4 -0.7 hydrogen peroxide-inducible genes activator compare
AMB_RS01830 -1.3 -0.5 hypothetical protein compare
AMB_RS14620 -1.3 -3.5 ArsR family transcriptional regulator compare
AMB_RS14855 -1.3 -2.5 molybdate ABC transporter substrate-binding protein compare
AMB_RS16100 -1.2 -5.7 RNA polymerase sigma factor RpoH compare
AMB_RS07865 -1.2 -6.0 ATP-dependent chaperone ClpB compare
AMB_RS14035 -1.2 -4.8 endopeptidase La compare
AMB_RS07010 -1.2 -5.5 ATP-dependent helicase compare
AMB_RS12320 -1.2 -1.4 septal ring lytic transglycosylase RlpA family protein compare
AMB_RS20120 -1.2 -2.9 VOC family protein compare
AMB_RS11640 -1.2 -1.9 UbiX family flavin prenyltransferase compare
AMB_RS06370 -1.2 -2.2 DNA-binding response regulator compare
AMB_RS00010 -1.2 -2.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
AMB_RS22810 -1.1 -1.3 hypothetical protein compare
AMB_RS21385 -1.1 -4.9 helix-turn-helix transcriptional regulator compare
AMB_RS18590 -1.1 -1.4 glycosyltransferase family 2 protein compare
AMB_RS16130 -1.1 -1.8 phosphoglycerate dehydrogenase compare
AMB_RS00355 -1.1 -6.3 radical SAM protein compare
AMB_RS21430 -1.0 -1.0 hypothetical protein compare
AMB_RS13920 -1.0 -1.2 molybdopterin-guanine dinucleotide biosynthesis protein B compare
AMB_RS00795 -1.0 -6.9 LPS biosynthesis protein compare
AMB_RS12295 -1.0 -1.5 TatD family deoxyribonuclease compare
AMB_RS20770 -1.0 -2.4 TrkH family potassium uptake protein compare
AMB_RS18915 -1.0 -2.5 Flp family type IVb pilin compare
AMB_RS13815 -1.0 -2.4 hypothetical protein compare
AMB_RS08580 -1.0 -2.0 hypothetical protein compare
AMB_RS03725 -1.0 -3.9 DNA helicase II compare
AMB_RS22490 -0.9 -2.1 YdcF family protein compare
AMB_RS23195 -0.9 -3.5 ABC transporter ATP-binding protein compare
AMB_RS20750 -0.9 -4.7 YbaB/EbfC family nucleoid-associated protein compare
AMB_RS21265 -0.9 -3.2 c-type cytochrome biogenesis protein CcmI compare
AMB_RS09535 -0.9 -2.4 hypothetical protein compare
AMB_RS23090 -0.9 -3.1 NAD(P)-dependent oxidoreductase compare
AMB_RS20350 -0.9 -3.5 aspartate 1-decarboxylase compare
AMB_RS01655 -0.9 -1.9 hypothetical protein compare
AMB_RS03405 -0.9 -0.8 LysR family transcriptional regulator compare
AMB_RS22150 -0.9 -1.3 MarR family transcriptional regulator compare
AMB_RS19880 -0.9 -1.9 site-specific tyrosine recombinase XerD compare
AMB_RS15180 -0.8 -4.8 hypothetical protein compare
AMB_RS15200 -0.8 -5.4 hypothetical protein compare
AMB_RS07115 -0.8 -1.9 Lrp/AsnC family transcriptional regulator compare
AMB_RS07745 -0.8 -2.5 disulfide bond formation protein B compare
AMB_RS24580 -0.8 -3.9 hypothetical protein compare
AMB_RS01875 -0.8 -2.8 hypothetical protein compare
AMB_RS04630 -0.8 -0.8 tRNA-Met compare
AMB_RS03835 -0.8 -1.2 YicC family protein compare
AMB_RS14595 -0.8 -4.0 acetoin utilization protein compare
AMB_RS01415 -0.8 -1.2 rhodanese-like domain-containing protein compare
AMB_RS08035 -0.8 -1.3 CBS domain-containing protein compare
AMB_RS12615 -0.7 -3.6 phytoene/squalene synthetase compare
AMB_RS00820 -0.7 -2.2 GDP-L-fucose synthase compare
AMB_RS19545 -0.7 -1.8 elongation factor 4 compare
AMB_RS02660 -0.7 -3.3 SCO family protein compare
AMB_RS09095 -0.7 -3.6 hypothetical protein compare
AMB_RS04325 -0.7 -3.8 TetR/AcrR family transcriptional regulator compare
AMB_RS10350 -0.7 -1.1 DNA polymerase III subunit epsilon compare
AMB_RS01305 -0.7 -4.4 protocatechuate 4,5-dioxygenase subunit alpha compare
AMB_RS03110 -0.7 -0.9 membrane protein compare
AMB_RS09725 -0.7 -2.1 phage tail assembly chaperone compare
AMB_RS15185 -0.7 -2.7 cytochrome c-552 precursor compare
AMB_RS05435 -0.7 -1.7 ABC transporter permease compare
AMB_RS21050 -0.7 -1.4 CoA pyrophosphatase compare
AMB_RS19850 -0.7 -2.3 hypothetical protein compare
AMB_RS02240 -0.7 -1.4 surface lipoprotein compare
AMB_RS21455 -0.7 -2.7 XRE family transcriptional regulator compare
AMB_RS07555 -0.7 -1.5 DUF1566 domain-containing protein compare
AMB_RS22480 -0.6 -1.1 cell division ATP-binding protein FtsE compare
AMB_RS17335 -0.6 -1.0 N-acyl-L-homoserine lactone synthetase compare
AMB_RS01605 -0.6 -1.4 aspartate aminotransferase family protein compare
AMB_RS22010 -0.6 -1.6 hypothetical protein compare
AMB_RS06005 -0.6 -1.8 hypothetical protein compare
AMB_RS18095 -0.6 -2.6 hypothetical protein compare
AMB_RS12325 -0.6 -1.5 lytic murein transglycosylase compare
AMB_RS12785 -0.6 -2.1 murein transglycosylase compare
AMB_RS13415 -0.6 -4.1 sulfurtransferase FdhD compare
AMB_RS02025 -0.6 -1.0 hypothetical protein compare
AMB_RS18330 -0.6 -3.5 glycosyl transferase family protein compare
AMB_RS14240 -0.6 -1.8 hypothetical protein compare
AMB_RS07645 -0.6 -1.4 hypothetical protein compare
AMB_RS06665 -0.6 -1.7 LrgB family protein compare
AMB_RS00815 -0.6 -3.9 hypothetical protein compare
AMB_RS20020 -0.6 -1.0 cell division protein ZapE compare
AMB_RS00075 -0.6 -0.9 P-II family nitrogen regulator compare
AMB_RS12885 -0.6 -1.1 hypothetical protein compare
AMB_RS17405 -0.6 -1.6 hypothetical protein compare
AMB_RS19230 -0.6 -1.8 molybdopterin-guanine dinucleotide biosynthesis protein B compare
AMB_RS23065 -0.6 -1.7 hypothetical protein compare
AMB_RS17995 -0.6 -2.5 hypothetical protein compare
AMB_RS20665 -0.6 -1.0 class I SAM-dependent methyltransferase compare
AMB_RS12405 -0.6 -2.7 UPF0016 domain-containing protein compare
AMB_RS21445 -0.6 -3.6 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha compare
AMB_RS05075 -0.6 -0.7 transcriptional regulator compare
AMB_RS22375 -0.6 -1.7 hypothetical protein compare
AMB_RS21955 -0.6 -1.9 hypothetical protein compare
AMB_RS11390 -0.6 -2.7 NYN domain-containing protein compare
AMB_RS08465 -0.6 -3.8 ABC transporter ATP-binding protein compare
AMB_RS15610 -0.6 -3.2 hypothetical protein compare
AMB_RS08470 -0.6 -2.2 ABC transporter ATP-binding protein compare
AMB_RS16705 -0.5 -0.9 LysR family transcriptional regulator compare
AMB_RS16810 -0.5 -1.0 IS66 family insertion sequence hypothetical protein compare
AMB_RS21750 -0.5 -1.7 DNA-binding response regulator compare
AMB_RS17585 -0.5 -3.2 type I secretion system ATPase compare
AMB_RS14270 -0.5 -1.5 response regulator compare
AMB_RS11780 -0.5 -1.7 glutamate synthase subunit beta compare
AMB_RS23435 -0.5 -2.5 GGDEF domain-containing protein compare
AMB_RS12905 -0.5 -2.0 pentapeptide repeat-containing protein compare
AMB_RS10180 -0.5 -1.2 hypothetical protein compare
AMB_RS22320 -0.5 -3.9 carbohydrate porin compare
AMB_RS24585 -0.5 -1.0 hypothetical protein compare
AMB_RS08190 -0.5 -1.0 hypothetical protein compare
AMB_RS07775 -0.5 -2.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
AMB_RS01930 -0.5 -1.4 DUF4172 domain-containing protein compare
AMB_RS19255 -0.5 -4.0 excinuclease ABC subunit UvrB compare
AMB_RS09845 -0.5 -1.5 hypothetical protein compare
AMB_RS05175 -0.5 -1.2 transcriptional repressor compare
AMB_RS22085 -0.5 -5.0 cytochrome c oxidase accessory protein CcoG compare
AMB_RS13830 -0.5 -1.1 DUF1127 domain-containing protein compare
AMB_RS18370 -0.5 -0.2 hypothetical protein compare
AMB_RS05405 -0.5 -0.6 4Fe-4S dicluster domain-containing protein compare
AMB_RS14525 -0.5 -0.5 xylanase/chitin deacetylase compare
AMB_RS15560 -0.5 -0.9 hemerythrin compare
AMB_RS21025 -0.5 -3.5 DUF3422 domain-containing protein compare
AMB_RS21210 -0.5 -2.2 hydroxyacylglutathione hydrolase compare
AMB_RS02815 -0.5 -2.9 hypothetical protein compare
AMB_RS02655 -0.5 -3.5 sulfite exporter TauE/SafE family protein compare
AMB_RS18145 -0.5 -1.7 GntR family transcriptional regulator compare
AMB_RS21665 -0.5 -1.2 hypothetical protein compare
AMB_RS18850 -0.5 -1.0 class I poly(R)-hydroxyalkanoic acid synthase compare
AMB_RS03105 -0.5 -1.8 hypothetical protein compare
AMB_RS00810 -0.5 -2.7 hypothetical protein compare
AMB_RS08460 -0.5 -3.4 branched-chain amino acid ABC transporter permease compare
AMB_RS13150 -0.5 -2.1 electron transport complex subunit RsxA compare
AMB_RS23170 -0.5 -2.0 hypothetical protein compare
AMB_RS19845 -0.5 -1.4 hypothetical protein compare
AMB_RS00180 -0.5 -2.5 hypothetical protein compare
AMB_RS12190 -0.5 -1.4 hypothetical protein compare
AMB_RS23070 -0.5 -1.3 ferredoxin compare
AMB_RS00855 -0.5 -2.4 helix-turn-helix domain-containing protein compare
AMB_RS15550 -0.5 -2.0 copper chaperone PCu(A)C compare
AMB_RS19875 -0.5 -0.7 hypothetical protein compare
AMB_RS03015 -0.5 -1.7 hypothetical protein compare
AMB_RS02690 -0.5 -2.4 dihydropyrimidine dehydrogenase subunit A compare
AMB_RS00800 -0.5 -2.6 nucleoside-diphosphate-sugar pyrophosphorylase compare
AMB_RS09860 -0.4 -1.1 hypothetical protein compare
AMB_RS21280 -0.4 -1.0 TVP38/TMEM64 family protein compare
AMB_RS08325 -0.4 -2.2 hydrogenase maturation factor compare
AMB_RS21125 -0.4 -1.4 YciI family protein compare
AMB_RS17525 -0.4 -1.9 hypothetical protein compare
AMB_RS18015 -0.4 -1.6 ABC transporter ATP-binding protein compare
AMB_RS22770 -0.4 -1.5 radical SAM protein compare
AMB_RS11300 -0.4 -3.2 adenylate/guanylate cyclase domain-containing protein compare
AMB_RS19310 -0.4 -1.0 hypothetical protein compare
AMB_RS17350 -0.4 -0.8 rubrerythrin compare
AMB_RS13710 -0.4 -0.9 hypothetical protein compare
AMB_RS15470 -0.4 -1.5 oxidoreductase compare
AMB_RS23865 -0.4 -1.3 DUF2786 domain-containing protein compare
AMB_RS02585 -0.4 -1.4 flagellar motor switch protein FliG compare
AMB_RS01745 -0.4 -1.1 hypothetical protein compare
AMB_RS19645 -0.4 -2.1 cAMP-binding protein compare
AMB_RS03610 -0.4 -2.6 transcription elongation factor GreA compare
AMB_RS13835 -0.4 -1.8 RidA family protein compare
AMB_RS12410 -0.4 -2.4 excinuclease ABC subunit UvrA compare
AMB_RS07165 -0.4 -1.3 hemerythrin compare
AMB_RS02835 -0.4 -0.8 two-component sensor histidine kinase compare
AMB_RS06755 -0.4 -0.9 hypothetical protein compare
AMB_RS23500 -0.4 -1.4 hypothetical protein compare
AMB_RS16430 -0.4 -1.6 hypothetical protein compare
AMB_RS07070 -0.4 -0.7 Crp/Fnr family transcriptional regulator compare
AMB_RS01310 -0.4 -2.4 protocatechuate 3,4-dioxygenase subunit beta compare
AMB_RS03060 -0.4 -0.7 peptidoglycan editing factor PgeF compare
AMB_RS09975 -0.4 -2.4 ABC transporter permease compare
AMB_RS13400 -0.4 -2.1 formylglycine-generating enzyme family protein compare
AMB_RS15375 -0.4 -1.7 methyl-accepting chemotaxis protein compare
AMB_RS10115 -0.4 -1.0 aminoacyl-tRNA hydrolase compare
AMB_RS20145 -0.4 -1.2 chromosome segregation ATPase compare
AMB_RS19240 -0.4 -2.3 UvrABC system protein C compare
AMB_RS12590 -0.4 -2.7 tetratricopeptide repeat protein compare
AMB_RS03615 -0.4 -1.6 hypothetical protein compare
AMB_RS03495 -0.4 -2.6 alpha/beta hydrolase compare
AMB_RS17980 -0.4 -2.0 biopolymer transporter ExbD compare
AMB_RS03230 -0.4 -1.6 hypothetical protein compare
AMB_RS18385 -0.4 -1.8 transcriptional regulator compare
AMB_RS22580 -0.4 -2.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
AMB_RS09565 -0.4 -1.8 hypothetical protein compare
AMB_RS20015 -0.4 -3.0 exopolyphosphatase compare
AMB_RS07700 -0.4 -1.1 hypothetical protein compare
AMB_RS00850 -0.4 -2.6 LD-carboxypeptidase compare


Specific Phenotypes

None in this experiment

For Magnetospirillum magneticum AMB-1 in magnetic pulldown experiments

For magnetic pulldown Iron across organisms