Experiment set1IT076 for Serratia liquefaciens MT49

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Nickel (II) chloride hexahydrate 80 uM, anaerobic

200 most important genes:

  gene name fitness t score description  
IAI46_13260 -3.3 -3.6 FNR family transcription factor compare
IAI46_10660 -3.1 -2.2 TetR/AcrR family transcriptional regulator compare
IAI46_24945 -2.7 -1.8 ribosome-dependent GTPase TypA compare
IAI46_08130 -2.5 -2.9 ABC transporter ATP-binding protein compare
IAI46_20670 -2.5 -2.2 Hpt domain-containing protein compare
IAI46_23090 -2.4 -12.6 glucose-6-phosphate isomerase compare
IAI46_18460 -2.4 -5.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI46_04935 -2.4 -2.0 exodeoxyribonuclease VII small subunit compare
IAI46_00610 -2.4 -2.3 dTDP-glucose 4,6-dehydratase compare
IAI46_25195 -2.3 -2.2 phosphate signaling complex protein PhoU compare
IAI46_05545 -2.3 -2.2 hypothetical protein compare
IAI46_24755 -2.3 -8.6 O-antigen ligase family protein compare
IAI46_23690 -2.3 -2.6 adenine-specific DNA-methyltransferase compare
IAI46_24750 -2.3 -4.0 glycosyltransferase compare
IAI46_00725 -2.2 -2.6 tyrosine recombinase XerC compare
IAI46_02135 -2.1 -13.1 anaerobic ribonucleoside-triphosphate reductase compare
IAI46_06585 -2.1 -3.3 molybdopterin synthase catalytic subunit MoaE compare
IAI46_02130 -2.1 -5.6 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
IAI46_24150 -1.9 -2.2 inorganic phosphate transporter PitA compare
IAI46_17750 -1.9 -4.9 acetate kinase compare
IAI46_25250 -1.8 -4.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI46_14610 -1.8 -2.4 zinc ABC transporter ATP-binding protein ZnuC compare
IAI46_05375 -1.8 -2.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI46_12055 -1.8 -2.3 hypothetical protein compare
IAI46_14520 -1.8 -2.3 septum site-determining protein MinD compare
IAI46_03840 -1.8 -3.7 recombinase RecA compare
IAI46_03255 -1.7 -3.3 peptidylprolyl isomerase SurA compare
IAI46_13995 -1.7 -2.8 23S rRNA pseudouridine(2605) synthase RluB compare
IAI46_10285 -1.6 -2.3 peptide chain release factor N(5)-glutamine methyltransferase compare
IAI46_08610 -1.6 -9.6 formate C-acetyltransferase compare
IAI46_24760 -1.6 -4.7 glycosyltransferase compare
IAI46_24645 -1.5 -6.2 6-phosphofructokinase compare
IAI46_01940 -1.5 -1.5 30S ribosome-binding factor RbfA compare
IAI46_24985 -1.5 -6.7 DNA polymerase I compare
IAI46_20270 -1.5 -1.8 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI46_17810 -1.5 -8.0 amidophosphoribosyltransferase compare
IAI46_08605 -1.4 -6.2 pyruvate formate lyase 1-activating protein compare
IAI46_09235 -1.4 -2.6 hypothetical protein compare
IAI46_12660 -1.4 -1.3 NAD(P)H-dependent oxidoreductase compare
IAI46_00735 -1.4 -6.0 DNA helicase II compare
IAI46_06155 -1.4 -1.5 DUF3861 domain-containing protein compare
IAI46_02940 -1.4 -7.3 phosphoserine phosphatase compare
IAI46_25110 -1.4 -4.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI46_20730 -1.4 -2.0 site-specific tyrosine recombinase XerD compare
IAI46_18090 -1.4 -2.3 cytochrome c maturation protein CcmE compare
IAI46_19655 -1.3 -3.9 SsrA-binding protein SmpB compare
IAI46_19600 -1.3 -4.8 ATP-dependent RNA helicase SrmB compare
IAI46_15510 -1.3 -2.6 respiratory nitrate reductase subunit gamma compare
IAI46_07870 -1.3 -2.0 hypothetical protein compare
IAI46_08635 -1.3 -5.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI46_08035 -1.3 -4.1 oligosaccharide flippase family protein compare
IAI46_19475 -1.2 -8.8 phosphoribosylformylglycinamidine synthase compare
IAI46_01360 -1.2 -7.0 phosphoribosylamine--glycine ligase compare
IAI46_24770 -1.2 -3.4 polysaccharide deacetylase family protein compare
IAI46_12385 -1.1 -1.8 cupin domain-containing protein compare
IAI46_20900 -1.1 -5.7 phosphoglycerate dehydrogenase compare
IAI46_18770 -1.1 -3.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI46_01365 -1.1 -8.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI46_24695 -1.1 -4.9 protein-export chaperone SecB compare
IAI46_18345 -1.1 -2.1 iron-enterobactin ABC transporter permease compare
IAI46_15960 -1.1 -2.1 flagellar basal body rod protein FlgB compare
IAI46_23240 -1.1 -3.1 shikimate dehydrogenase compare
IAI46_12615 -1.1 -1.4 hypothetical protein compare
IAI46_09650 -1.1 -1.6 YeeE/YedE family protein compare
IAI46_09575 -1.0 -2.3 hypothetical protein compare
IAI46_25010 -1.0 -6.1 molybdenum cofactor guanylyltransferase MobA compare
IAI46_15520 -1.0 -4.9 nitrate reductase subunit beta compare
IAI46_08615 -1.0 -2.5 formate transporter FocA compare
IAI46_11900 -1.0 -3.1 PTS glucose transporter subunit IIA compare
IAI46_05035 -1.0 -1.6 helix-hairpin-helix domain-containing protein compare
IAI46_13935 -1.0 -1.3 LapA family protein compare
IAI46_18885 -1.0 -3.2 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI46_14540 -1.0 -2.2 Slp family lipoprotein compare
IAI46_24665 -0.9 -3.4 envelope stress sensor histidine kinase CpxA compare
IAI46_06375 -0.9 -1.2 tRNA-Lys compare
IAI46_10995 -0.9 -1.8 DUF2502 domain-containing protein compare
IAI46_18525 -0.9 -2.7 DUF2919 domain-containing protein compare
IAI46_23505 -0.9 -2.9 peptidylprolyl isomerase compare
IAI46_10790 -0.9 -1.9 GAF domain-containing protein compare
IAI46_13685 -0.9 -3.0 DNA polymerase III subunit theta compare
IAI46_04530 -0.9 -2.1 DUF2501 domain-containing protein compare
IAI46_15515 -0.9 -2.8 nitrate reductase molybdenum cofactor assembly chaperone compare
IAI46_13895 -0.9 -2.8 DeoR/GlpR transcriptional regulator compare
IAI46_06575 -0.9 -1.7 cyclic pyranopterin monophosphate synthase MoaC compare
IAI46_02875 -0.9 -4.1 peptide chain release factor 3 compare
IAI46_01620 -0.9 -1.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI46_07830 -0.9 -4.2 molybdopterin molybdotransferase MoeA compare
IAI46_24690 -0.9 -4.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
IAI46_17755 -0.8 -2.2 phosphate acetyltransferase compare
IAI46_09755 -0.8 -2.4 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
IAI46_18670 -0.8 -1.3 ferredoxin-type protein NapF compare
IAI46_14120 -0.8 -1.1 DUF1471 domain-containing protein compare
IAI46_08300 -0.8 -2.8 DNA-binding transcriptional repressor DeoR compare
IAI46_12420 -0.8 -1.9 aldehyde dehydrogenase family protein compare
IAI46_24785 -0.8 -1.2 glycosyltransferase compare
IAI46_17385 -0.8 -1.3 tRNA-Ser compare
IAI46_00640 -0.8 -2.7 ECA oligosaccharide polymerase compare
IAI46_01955 -0.8 -4.5 polyribonucleotide nucleotidyltransferase compare
IAI46_22335 -0.8 -5.6 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI46_12455 -0.8 -1.7 FCD domain-containing protein compare
IAI46_19560 -0.8 -2.9 elongation factor 4 compare
IAI46_11420 -0.8 -2.0 RidA family protein compare
IAI46_21540 -0.8 -2.1 type VI secretion system contractile sheath small subunit compare
IAI46_06145 -0.8 -3.0 alpha-D-glucose phosphate-specific phosphoglucomutase compare
IAI46_13920 -0.8 -1.5 DUF1471 domain-containing protein compare
IAI46_24380 -0.8 -3.3 DUF413 domain-containing protein compare
IAI46_10585 -0.8 -2.1 hypothetical protein compare
IAI46_12805 -0.8 -1.2 protocatechuate 3,4-dioxygenase subunit alpha compare
IAI46_14570 -0.8 -1.9 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
IAI46_18915 -0.8 -4.6 polyphosphate kinase 1 compare
IAI46_01960 -0.8 -4.8 lipoprotein NlpI compare
IAI46_23660 -0.7 -2.3 nitrite reductase small subunit NirD compare
IAI46_19175 -0.7 -1.7 enoyl-CoA hydratase/isomerase family protein compare
IAI46_06505 -0.7 -1.7 6-phosphogluconolactonase compare
IAI46_12160 -0.7 -2.4 hypothetical protein compare
IAI46_25160 -0.7 -2.2 F0F1 ATP synthase subunit epsilon compare
IAI46_13975 -0.7 -2.0 YciN family protein compare
IAI46_13175 -0.7 -1.1 flagellar brake protein compare
IAI46_24705 -0.7 -1.4 rhodanese-like domain-containing protein compare
IAI46_13320 -0.7 -0.9 serine protease compare
IAI46_15135 -0.7 -1.6 NinE family protein compare
IAI46_18865 -0.7 -0.9 E3 ubiquitin--protein ligase compare
IAI46_07980 -0.7 -1.4 dCTP deaminase compare
IAI46_19330 -0.7 -2.1 ISC system 2Fe-2S type ferredoxin compare
IAI46_06845 -0.7 -2.0 heme-binding protein compare
IAI46_15525 -0.7 -4.3 nitrate reductase subunit alpha compare
IAI46_10305 -0.7 -3.3 C4-dicarboxylic acid transporter DauA compare
IAI46_16070 -0.7 -1.7 universal stress protein UspC compare
IAI46_14675 -0.7 -2.6 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
IAI46_10025 -0.7 -1.1 DUF4377 domain-containing protein compare
IAI46_13625 -0.7 -1.8 HK97 gp10 family phage protein compare
IAI46_23500 -0.7 -0.9 SlyX family protein compare
IAI46_23815 -0.7 -1.8 ferrous iron transporter C compare
IAI46_14170 -0.7 -1.3 DUF1937 family protein compare
IAI46_10725 -0.7 -1.9 ASCH domain-containing protein compare
IAI46_16270 -0.7 -1.4 hypothetical protein compare
IAI46_13880 -0.7 -1.7 fructose-6-phosphate aldolase compare
IAI46_12415 -0.7 -1.9 GMC family oxidoreductase N-terminal domain-containing protein compare
IAI46_02265 -0.7 -1.1 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI46_16365 -0.7 -0.9 phenylacetate-CoA oxygenase subunit PaaJ compare
IAI46_07415 -0.6 -1.6 GNAT family N-acetyltransferase compare
IAI46_10255 -0.6 -1.1 stress-induced protein YchH compare
IAI46_13305 -0.6 -2.1 two-component system sensor histidine kinase RstB compare
IAI46_22250 -0.6 -1.3 DUF1090 domain-containing protein compare
IAI46_14320 -0.6 -1.9 NAD(P)H nitroreductase compare
IAI46_17660 -0.6 -1.5 NADH-quinone oxidoreductase subunit L compare
IAI46_09740 -0.6 -2.2 dihydroorotase compare
IAI46_07465 -0.6 -2.0 LysR family transcriptional regulator compare
IAI46_14755 -0.6 -1.5 ASCH domain-containing protein compare
IAI46_05520 -0.6 -0.8 transposase compare
IAI46_03985 -0.6 -3.7 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI46_14840 -0.6 -2.3 peptidoglycan editing factor PgeF compare
IAI46_08640 -0.6 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
IAI46_09475 -0.6 -2.7 hypothetical protein compare
IAI46_18035 -0.6 -2.1 endonuclease SmrB compare
IAI46_13915 -0.6 -1.7 orotidine-5'-phosphate decarboxylase compare
IAI46_04825 -0.6 -2.2 peroxiredoxin C compare
IAI46_04840 -0.6 -3.4 tRNA guanosine(34) transglycosylase Tgt compare
IAI46_01545 -0.6 -3.0 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
IAI46_24970 -0.6 -4.9 oxygen-independent coproporphyrinogen III oxidase compare
IAI46_18550 -0.6 -1.3 YaiI/YqxD family protein compare
IAI46_16635 -0.6 -1.7 thymidylate kinase compare
IAI46_06565 -0.6 -1.2 GTP 3',8-cyclase MoaA compare
IAI46_13125 -0.6 -1.5 SRPBCC family protein compare
IAI46_09850 -0.6 -1.5 hypothetical protein compare
IAI46_12515 -0.6 -0.8 4Fe-4S dicluster domain-containing protein compare
IAI46_19870 -0.6 -1.0 DUF4440 domain-containing protein compare
IAI46_03970 -0.6 -1.9 pheA operon leader peptide PheL compare
IAI46_08215 -0.6 -2.0 ATP phosphoribosyltransferase compare
IAI46_14425 -0.6 -1.8 ABC transporter ATP-binding protein compare
IAI46_12125 -0.6 -1.8 MFS transporter compare
IAI46_08805 -0.5 -2.3 quinone-dependent dihydroorotate dehydrogenase compare
IAI46_11910 -0.5 -2.1 PRD domain-containing protein compare
IAI46_17795 -0.5 -2.0 histidine ABC transporter permease HisQ compare
IAI46_08785 -0.5 -1.6 aliphatic sulfonate ABC transporter permease SsuC compare
IAI46_15390 -0.5 -1.8 ABC transporter permease compare
IAI46_13055 -0.5 -0.8 alpha/beta hydrolase compare
IAI46_12725 -0.5 -1.0 TetR/AcrR family transcriptional regulator compare
IAI46_18025 -0.5 -2.0 chorismate synthase compare
IAI46_04845 -0.5 -1.3 preprotein translocase subunit YajC compare
IAI46_09775 -0.5 -2.5 phosphate acyltransferase PlsX compare
IAI46_00630 -0.5 -2.2 lipid III flippase WzxE compare
IAI46_15440 -0.5 -2.6 acyl-CoA desaturase compare
IAI46_09760 -0.5 -1.8 septum formation inhibitor Maf compare
IAI46_01980 -0.5 -2.4 sulfurtransferase-like selenium metabolism protein YedF compare
IAI46_18490 -0.5 -1.9 cysteine synthase CysM compare
IAI46_04955 -0.5 -1.8 YajQ family cyclic di-GMP-binding protein compare
IAI46_03235 -0.5 -1.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI46_13680 -0.5 -1.8 hypothetical protein compare
IAI46_12205 -0.5 -1.2 3-hydroxyacyl-ACP dehydratase FabZ compare
IAI46_18120 -0.5 -2.0 tRNA-Arg compare
IAI46_14050 -0.5 -1.4 BON domain-containing protein compare
IAI46_13030 -0.5 -1.9 elongation factor G compare
IAI46_06275 -0.5 -0.8 2-oxoglutarate dehydrogenase E1 component compare
IAI46_06965 -0.5 -1.1 ABC transporter ATP-binding protein compare
IAI46_12885 -0.5 -1.6 glycosyl transferase compare
IAI46_11955 -0.5 -1.9 LacI family DNA-binding transcriptional regulator compare
IAI46_20980 -0.5 -2.8 L-ribulose-5-phosphate 4-epimerase compare
IAI46_18145 -0.5 -1.1 hypothetical protein compare
IAI46_11080 -0.5 -1.4 ABC transporter substrate-binding protein compare


Specific Phenotypes

None in this experiment

For Serratia liquefaciens MT49 in stress experiments

For stress Nickel (II) chloride hexahydrate across organisms