Experiment set1IT076 for Enterobacter asburiae PDN3

Compare to:

M9 with sucrose and trichloroethylene 76.3 uM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_2651 -6.7 -10.2 glutamate 5-kinase compare
EX28DRAFT_4422 -6.1 -10.3 argininosuccinate lyase compare
EX28DRAFT_2851 -6.0 -3.2 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_4331 -5.9 -14.2 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_4544 -5.7 -1.4 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_0932 -5.7 -3.9 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_0536 -5.7 -3.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_2701 -5.6 -12.2 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_2027 -5.5 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_0538 -5.5 -5.9 histidinol-phosphate aminotransferase compare
EX28DRAFT_2585 -5.5 -2.3 pyrroline-5-carboxylate reductase compare
EX28DRAFT_4443 -5.4 -14.4 dihydroxy-acid dehydratase compare
EX28DRAFT_4153 -5.3 -2.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_3668 -5.0 -10.1 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_4493 -4.9 -5.6 Transcriptional regulator compare
EX28DRAFT_0046 -4.7 -3.0 shikimate dehydrogenase compare
EX28DRAFT_4446 -4.7 -8.8 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_2265 -4.7 -1.6 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_2916 -4.6 -7.4 diaminopimelate decarboxylase compare
EX28DRAFT_3046 -4.5 -7.9 cystathionine beta-lyase, bacterial compare
EX28DRAFT_0933 -4.5 -11.1 tryptophan synthase, beta subunit compare
EX28DRAFT_4421 -4.5 -1.1 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_3646 -4.5 -6.2 4-hydroxythreonine-4-phosphate dehydrogenase compare
EX28DRAFT_4156 -4.4 -1.8 ribulose-phosphate 3-epimerase compare
EX28DRAFT_4444 -4.4 -8.9 threonine ammonia-lyase, biosynthetic, long form compare
EX28DRAFT_2650 -4.4 -7.1 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_4350 -4.4 -1.1 nitrogen regulation protein NR(I) compare
EX28DRAFT_4418 -4.3 -9.9 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_0934 -4.3 -8.6 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_0539 -4.3 -6.7 histidinol dehydrogenase compare
EX28DRAFT_0541 -4.3 -1.0 RNA compare
EX28DRAFT_0537 -4.1 -8.9 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_0533 -4.1 -7.5 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_1650 -4.1 -1.3 ribonuclease T compare
EX28DRAFT_0540 -4.0 -5.9 ATP phosphoribosyltransferase compare
EX28DRAFT_3667 -4.0 -4.4 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_0534 -3.9 -8.7 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_0284 -3.9 -10.7 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_0321 -3.9 -0.9 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_0167 -3.9 -1.9 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_4420 -3.9 -1.4 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_3669 -3.7 -5.7 3-isopropylmalate dehydrogenase compare
EX28DRAFT_2272 -3.7 -9.9 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_0535 -3.7 -5.6 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_2846 -3.7 -5.3 adenylyl-sulfate kinase compare
EX28DRAFT_2472 -3.6 -0.9 Membrane protein implicated in regulation of membrane protease activity compare
EX28DRAFT_4411 -3.6 -7.4 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_3461 -3.5 -4.0 ornithine carbamoyltransferase compare
EX28DRAFT_0936 -3.5 -5.9 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_3614 -3.5 -7.3 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_2250 -3.5 -2.2 peptidoglycan-associated lipoprotein compare
EX28DRAFT_3670 -3.4 -6.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_3224 -3.3 -6.9 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_2917 -3.3 -5.7 Transcriptional regulator compare
EX28DRAFT_2270 -3.2 -1.1 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_2893 -3.2 -6.1 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_2548 -3.2 -4.9 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_3711 -3.2 -1.1 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_2252 -3.1 -2.3 TolA protein compare
EX28DRAFT_0935 -3.0 -6.5 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_2699 -3.0 -7.7 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_3616 -3.0 -3.0 threonine synthase compare
EX28DRAFT_4445 -3.0 -4.5 Transcriptional regulator compare
EX28DRAFT_2531 -2.7 -2.6 endopeptidase La compare
EX28DRAFT_0214 -2.7 -3.2 cysteine synthase A compare
EX28DRAFT_3647 -2.7 -3.8 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_2852 -2.6 -8.1 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_0125 -2.6 -0.9 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_0434 -2.5 -1.4 hypothetical protein compare
EX28DRAFT_3418 -2.4 -1.1 Bacterial regulatory helix-turn-helix protein, lysR family compare
EX28DRAFT_2853 -2.4 -4.6 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_1239 -2.3 -1.2 hypothetical protein compare
EX28DRAFT_0778 -2.3 -1.0 hypothetical protein compare
EX28DRAFT_3671 -2.3 -4.4 RNA compare
EX28DRAFT_4442 -2.3 -3.6 branched-chain amino acid aminotransferase, group I compare
EX28DRAFT_3507 -2.2 -1.2 Response regulator compare
EX28DRAFT_3613 -2.2 -3.5 RNA compare
EX28DRAFT_1497 -2.1 -1.4 hypothetical protein compare
EX28DRAFT_0286 -2.1 -1.6 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_2425 -2.0 -1.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0069 -2.0 -1.5 Superfamily II DNA and RNA helicases compare
EX28DRAFT_3426 -2.0 -1.2 conserved hypothetical protein EF_0831/AHA_3912 compare
EX28DRAFT_1844 -2.0 -1.3 pseudouridine synthase, RluA family compare
EX28DRAFT_3276 -2.0 -3.1 glutamate synthase small subunit family protein, proteobacterial compare
EX28DRAFT_2847 -2.0 -8.0 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_4170 -2.0 -6.4 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_4271 -1.9 -0.9 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_2849 -1.9 -4.5 uroporphyrin-III C-methyltransferase compare
EX28DRAFT_1000 -1.9 -2.5 intracellular protease, PfpI family compare
EX28DRAFT_4419 -1.9 -2.3 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_1050 -1.9 -2.6 luciferase family oxidoreductase, group 1 compare
EX28DRAFT_0111 -1.9 -2.0 FeS cluster assembly scaffold IscU compare
EX28DRAFT_2240 -1.9 -2.5 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_2848 -1.9 -6.8 sulfate adenylyltransferase, small subunit compare
EX28DRAFT_0469 -1.9 -1.2 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
EX28DRAFT_4515 -1.8 -1.7 hypothetical protein compare
EX28DRAFT_1059 -1.8 -1.5 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog compare
EX28DRAFT_2255 -1.7 -2.9 tol-pal system-associated acyl-CoA thioesterase compare
EX28DRAFT_3710 -1.7 -4.8 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_2043 -1.7 -5.1 transcriptional regulator, AsnC family compare
EX28DRAFT_3879 -1.7 -2.8 Glycosyltransferase compare
EX28DRAFT_3958 -1.7 -1.1 hypothetical protein compare
EX28DRAFT_3275 -1.7 -8.6 Glutamate synthase domain 2 compare
EX28DRAFT_2245 -1.7 -4.3 quinolinate synthetase (EC 2.5.1.72) compare
EX28DRAFT_0545 -1.6 -3.2 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_0292 -1.6 -2.2 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_1123 -1.6 -5.0 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_0291 -1.6 -1.8 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_4297 -1.6 -0.8 cell division ATP-binding protein FtsE compare
EX28DRAFT_0092 -1.6 -1.5 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_4383 -1.6 -5.8 transcriptional regulator, XRE family with cupin sensor compare
EX28DRAFT_1785 -1.6 -1.6 Putative hemolysin compare
EX28DRAFT_0972 -1.6 -1.3 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_1841 -1.5 -0.8 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_0118 -1.5 -3.2 SseB protein C-terminal domain/SseB protein N-terminal domain compare
EX28DRAFT_0190 -1.5 -1.2 transcriptional regulator, Spx/MgsR family compare
EX28DRAFT_3708 -1.5 -1.2 Transcriptional regulators compare
EX28DRAFT_0206 -1.5 -3.5 sulfate ABC transporter, permease protein CysT compare
EX28DRAFT_0331 -1.5 -2.1 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_4386 -1.5 -1.2 Signal transduction histidine kinase compare
EX28DRAFT_3849 -1.4 -2.2 PTS system, mannitol-specific IIC component compare
EX28DRAFT_4440 -1.4 -4.4 acetolactate synthase, large subunit (EC 2.2.1.6) compare
EX28DRAFT_4413 -1.4 -5.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
EX28DRAFT_0129 -1.4 -0.7 RNA compare
EX28DRAFT_1376 -1.4 -1.9 hypothetical protein compare
EX28DRAFT_4184 -1.4 -0.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0970 -1.4 -3.8 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_0693 -1.4 -0.9 DNA-binding regulatory protein, YebC/PmpR family compare
EX28DRAFT_4110 -1.4 -1.4 hypothetical protein compare
EX28DRAFT_1941 -1.3 -1.2 Protein of unknown function (DUF4089) compare
EX28DRAFT_1124 -1.3 -6.6 sucrose-6-phosphate hydrolase compare
EX28DRAFT_3702 -1.3 -2.8 nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19) compare
EX28DRAFT_2938 -1.3 -1.4 tRNA compare
EX28DRAFT_4478 -1.3 -2.6 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_2641 -1.3 -1.8 Ash protein family compare
EX28DRAFT_1719 -1.3 -0.9 integration host factor, alpha subunit compare
EX28DRAFT_2828 -1.3 -1.3 Toxin SymE, type I toxin-antitoxin system compare
EX28DRAFT_2546 -1.3 -3.9 2-dehydropantoate 2-reductase compare
EX28DRAFT_4349 -1.3 -0.8 hypothetical protein compare
EX28DRAFT_2702 -1.3 -3.4 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_0272 -1.2 -0.9 phosphohistidine phosphatase, SixA compare
EX28DRAFT_0208 -1.2 -3.5 sulfate ABC transporter, ATP-binding protein compare
EX28DRAFT_0071 -1.2 -6.2 L-aspartate oxidase (EC 1.4.3.16) compare
EX28DRAFT_0132 -1.2 -2.5 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_1699 -1.2 -1.7 hypothetical protein compare
EX28DRAFT_0038 -1.2 -1.5 K+ transport systems, NAD-binding component compare
EX28DRAFT_3626 -1.2 -1.2 RNA compare
EX28DRAFT_1591 -1.2 -2.6 hypothetical protein compare
EX28DRAFT_4384 -1.2 -2.1 Superoxide dismutase compare
EX28DRAFT_2492 -1.2 -1.9 Protein of unknown function (DUF2496) compare
EX28DRAFT_0706 -1.2 -1.7 Entner-Doudoroff aldolase compare
EX28DRAFT_3171 -1.2 -1.3 Predicted membrane protein compare
EX28DRAFT_0593 -1.1 -4.5 DNA-methyltransferase (dcm) compare
EX28DRAFT_1121 -1.1 -1.2 Sugar kinases, ribokinase family compare
EX28DRAFT_1412 -1.1 -1.5 phenylacetic acid degradation protein PaaD compare
EX28DRAFT_0219 -1.1 -4.6 Predicted Na+-dependent transporter compare
EX28DRAFT_0594 -1.1 -0.8 T/G mismatch-specific endonuclease (EC 3.1.-.-) compare
EX28DRAFT_2267 -1.1 -2.6 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_0073 -1.1 -0.8 Negative regulator of sigma E activity compare
EX28DRAFT_2474 -1.1 -2.6 copper-(or silver)-translocating P-type ATPase compare
EX28DRAFT_3079 -1.1 -0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0663 -1.1 -2.4 Chemotaxis signal transduction protein compare
EX28DRAFT_0001 -1.1 -1.1 Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain compare
EX28DRAFT_0876 -1.1 -0.4 hypothetical protein compare
EX28DRAFT_2225 -1.1 -3.5 3-carboxymuconate cyclase compare
EX28DRAFT_1295 -1.1 -1.5 Protein of unknown function (DUF2570) compare
EX28DRAFT_1122 -1.0 -3.6 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_4253 -1.0 -1.1 Phage-related lysozyme (muraminidase) compare
EX28DRAFT_0901 -1.0 -0.7 hypothetical protein compare
EX28DRAFT_1917 -1.0 -3.0 pyrimidine utilization protein D compare
EX28DRAFT_0116 -1.0 -1.4 FeS assembly protein IscX compare
EX28DRAFT_0998 -1.0 -1.9 Predicted carboxypeptidase compare
EX28DRAFT_0187 -1.0 -3.2 Predicted esterase compare
EX28DRAFT_1009 -1.0 -1.3 hypothetical protein compare
EX28DRAFT_2075 -1.0 -1.6 type II secretion system protein H compare
EX28DRAFT_4300 -1.0 -1.0 Predicted membrane protein compare
EX28DRAFT_0334 -1.0 -0.7 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_1656 -1.0 -1.3 Transcriptional regulator compare
EX28DRAFT_4482 -0.9 -1.4 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) compare
EX28DRAFT_2708 -0.9 -0.8 Protein of unknown function (DUF2946) compare
EX28DRAFT_0783 -0.9 -1.5 ABC-type phosphate/phosphonate transport system, periplasmic component compare
EX28DRAFT_0897 -0.9 -0.5 P2-like prophage tail protein X compare
EX28DRAFT_3645 -0.9 -1.2 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_1466 -0.9 -1.9 Lactoylglutathione lyase and related lyases compare
EX28DRAFT_1522 -0.9 -1.5 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
EX28DRAFT_2993 -0.9 -1.6 putative oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_2390 -0.9 -3.3 RNA polymerase sigma factor, sigma-70 family compare
EX28DRAFT_4351 -0.9 -2.1 Signal transduction histidine kinase, nitrogen specific compare
EX28DRAFT_4131 -0.9 -2.3 Protein of unknown function (DUF1471) compare
EX28DRAFT_0333 -0.9 -3.5 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_1328 -0.9 -0.8 Putative excisionase (DUF1233) compare
EX28DRAFT_4541 -0.9 -1.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4094 -0.9 -1.2 Protein of unknown function (DUF3261) compare
EX28DRAFT_1500 -0.9 -1.2 Predicted transcriptional regulators compare
EX28DRAFT_0247 -0.9 -2.8 type VI secretion system effector, Hcp1 family compare
EX28DRAFT_1300 -0.9 -0.8 hypothetical protein compare
EX28DRAFT_0322 -0.9 -3.7 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_0531 -0.9 -2.7 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_1382 -0.9 -0.8 transcriptional regulator, TetR family compare
EX28DRAFT_3954 -0.9 -5.6 acetolactate synthase, large subunit (EC 2.2.1.6) compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress Sucrose across organisms