Experiment set1IT075 for Variovorax sp. OAS795

Compare to:

Glycerol carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS16595 -8.3 -5.7 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS20615 -6.6 -7.1 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS19965 -6.5 -7.6 glycerol kinase GlpK compare
ABID97_RS01565 -6.4 -11.5 DNA starvation/stationary phase protection protein compare
ABID97_RS07435 -6.3 -7.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS08220 -6.3 -4.3 phosphoenolpyruvate carboxylase compare
ABID97_RS23225 -6.2 -13.9 glutamate synthase-related protein compare
ABID97_RS15375 -6.2 -7.1 DUF934 domain-containing protein compare
ABID97_RS03640 -6.2 -6.0 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS16600 -6.1 -7.2 CysB family HTH-type transcriptional regulator compare
ABID97_RS15380 -5.9 -13.8 nitrite/sulfite reductase compare
ABID97_RS06575 -5.8 -6.9 trehalose-phosphatase compare
ABID97_RS14095 -5.6 -6.7 PAS domain S-box protein compare
ABID97_RS07000 -5.3 -6.3 threonine ammonia-lyase, biosynthetic compare
ABID97_RS07430 -4.8 -9.8 pantoate--beta-alanine ligase compare
ABID97_RS05250 -4.8 -3.3 anthranilate synthase component I compare
ABID97_RS05260 -4.8 -1.9 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS10885 -4.7 -5.6 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS09180 -4.6 -3.2 DNA polymerase I compare
ABID97_RS08425 -4.5 -4.4 tryptophan synthase subunit alpha compare
ABID97_RS01755 -4.3 -13.5 pyruvate kinase compare
ABID97_RS16535 -4.2 -8.9 arginine/lysine/ornithine decarboxylase compare
ABID97_RS02455 -4.1 -4.6 nucleotidyltransferase family protein compare
ABID97_RS25015 -4.1 -2.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS13990 -4.0 -2.8 amino acid aminotransferase compare
ABID97_RS07415 -3.8 -13.4 quinolinate synthase NadA compare
ABID97_RS02600 -3.8 -2.6 homoserine O-acetyltransferase compare
ABID97_RS28990 -3.8 -5.4 aspartate 1-decarboxylase compare
ABID97_RS06345 -3.6 -3.5 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS23220 -3.6 -1.8 glutamate synthase subunit beta compare
ABID97_RS13860 -3.5 -9.0 hypothetical protein compare
ABID97_RS05275 -3.4 -2.3 anthranilate phosphoribosyltransferase compare
ABID97_RS12140 -3.3 -10.5 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS23455 -3.3 -3.2 hypothetical protein compare
ABID97_RS15665 -3.2 -6.4 [protein-PII] uridylyltransferase compare
ABID97_RS14090 -3.2 -1.8 response regulator transcription factor compare
ABID97_RS07410 -3.2 -4.9 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS21150 -3.1 -13.2 FAD-dependent oxidoreductase compare
ABID97_RS07775 -3.1 -3.2 phosphoribosylglycinamide formyltransferase compare
ABID97_RS23450 -3.1 -4.2 MBOAT family protein compare
ABID97_RS03805 -3.1 -1.7 ATP-binding protein compare
ABID97_RS05755 -2.9 -2.0 glycosyltransferase compare
ABID97_RS07065 -2.9 -13.1 glucose-6-phosphate dehydrogenase compare
ABID97_RS27370 -2.8 -1.6 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
ABID97_RS05750 -2.8 -2.7 glycosyltransferase compare
ABID97_RS05280 -2.7 -1.9 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS03910 -2.7 -1.9 orotate phosphoribosyltransferase compare
ABID97_RS08435 -2.7 -1.8 phosphoribosylanthranilate isomerase compare
ABID97_RS05765 -2.7 -1.8 UDP-glucose 4-epimerase GalE compare
ABID97_RS03800 -2.7 -2.6 O-antigen ligase family protein compare
ABID97_RS15465 -2.6 -14.2 sulfate ABC transporter substrate-binding protein compare
ABID97_RS02115 -2.6 -12.7 PilW family protein compare
ABID97_RS02110 -2.6 -15.9 type IV pilus modification protein PilV compare
ABID97_RS02125 -2.5 -20.4 PilC/PilY family type IV pilus protein compare
ABID97_RS23440 -2.5 -12.9 A24 family peptidase compare
ABID97_RS25085 -2.5 -4.1 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS02135 -2.5 -5.6 GspH/FimT family pseudopilin compare
ABID97_RS14100 -2.4 -11.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS15370 -2.4 -9.6 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS17850 -2.4 -1.2 tetratricopeptide repeat protein compare
ABID97_RS29215 -2.4 -1.6 LysR family transcriptional regulator compare
ABID97_RS04480 -2.4 -2.7 magnesium/cobalt transporter CorA compare
ABID97_RS23915 -2.3 -4.1 heme o synthase compare
ABID97_RS04960 -2.3 -1.3 ATP-binding protein compare
ABID97_RS00255 -2.3 -13.5 type IV pilus twitching motility protein PilT compare
ABID97_RS02120 -2.3 -10.2 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS05020 -2.3 -1.8 hypothetical protein compare
ABID97_RS15470 -2.3 -3.5 NADPH-dependent FMN reductase compare
ABID97_RS15360 -2.1 -6.9 GTP-binding protein compare
ABID97_RS15490 -2.1 -6.3 FMNH2-dependent alkanesulfonate monooxygenase compare
ABID97_RS19955 -2.1 -1.4 glycerol-3-phosphate dehydrogenase compare
ABID97_RS15480 -2.1 -5.5 sulfonate ABC transporter substrate-binding protein compare
ABID97_RS07500 -2.1 -2.8 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS25525 -2.1 -3.5 LacI family DNA-binding transcriptional regulator compare
ABID97_RS23435 -2.1 -11.4 type II secretion system F family protein compare
ABID97_RS08240 -2.0 -2.2 heme biosynthesis HemY N-terminal domain-containing protein compare
ABID97_RS08445 -2.0 -6.3 FimV/HubP family polar landmark protein compare
ABID97_RS17590 -2.0 -10.7 endopeptidase La compare
ABID97_RS23645 -2.0 -2.4 PP2C family serine/threonine-protein phosphatase compare
ABID97_RS02460 -2.0 -14.4 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS01840 -2.0 -10.9 DUF1631 family protein compare
ABID97_RS06190 -2.0 -5.7 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS12180 -2.0 -2.4 hypothetical protein compare
ABID97_RS15365 -1.9 -6.1 sulfate adenylyltransferase subunit CysD compare
ABID97_RS08430 -1.9 -1.3 tryptophan synthase subunit beta compare
ABID97_RS03915 -1.9 -8.6 DUF4124 domain-containing protein compare
ABID97_RS10705 -1.9 -5.3 H-NS histone family protein compare
ABID97_RS14625 -1.9 -4.8 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS20520 -1.9 -2.3 polyribonucleotide nucleotidyltransferase compare
ABID97_RS02420 -1.9 -6.6 protealysin inhibitor emfourin compare
ABID97_RS24170 -1.9 -6.3 ATP-binding protein compare
ABID97_RS23430 -1.9 -9.8 type IV-A pilus assembly ATPase PilB compare
ABID97_RS23230 -1.8 -8.1 transposase compare
ABID97_RS03415 -1.8 -5.0 histidine utilization repressor compare
ABID97_RS08775 -1.8 -1.9 ribosome small subunit-dependent GTPase A compare
ABID97_RS02130 -1.8 -8.4 type IV pilin protein compare
ABID97_RS01650 -1.8 -1.2 orotidine-5'-phosphate decarboxylase compare
ABID97_RS05670 -1.7 -1.6 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS21910 -1.7 -6.8 hypothetical protein compare
ABID97_RS06315 -1.7 -11.5 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS02140 -1.7 -7.9 sugar transferase compare
ABID97_RS15995 -1.7 -6.4 PilZ domain-containing protein compare
ABID97_RS06460 -1.7 -2.1 sigma 54-interacting transcriptional regulator compare
ABID97_RS11640 -1.7 -8.8 TetR family transcriptional regulator compare
ABID97_RS14975 -1.6 -4.1 hypothetical protein compare
ABID97_RS13750 -1.6 -1.3 hypothetical protein compare
ABID97_RS06060 -1.6 -1.6 hypothetical protein compare
ABID97_RS06175 -1.6 -11.7 STAS domain-containing protein compare
ABID97_RS03125 -1.6 -8.6 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS09935 -1.6 -5.9 hypothetical protein compare
ABID97_RS16470 -1.6 -1.8 translational GTPase TypA compare
ABID97_RS23650 -1.6 -11.8 serine/threonine-protein kinase compare
ABID97_RS04500 -1.6 -1.6 HPr(Ser) kinase/phosphatase compare
ABID97_RS24705 -1.6 -4.3 response regulator compare
ABID97_RS06450 -1.6 -2.3 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS06600 -1.5 -6.2 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS22705 -1.5 -8.2 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS17600 -1.5 -2.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS19375 -1.5 -4.4 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS07440 -1.5 -7.7 L-aspartate oxidase compare
ABID97_RS08510 -1.5 -7.4 GntR family transcriptional regulator compare
ABID97_RS15575 -1.5 -2.9 sulfate ABC transporter permease subunit CysT compare
ABID97_RS03110 -1.5 -4.5 helix-turn-helix transcriptional regulator compare
ABID97_RS01825 -1.5 -10.0 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS02145 -1.4 -6.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS27795 -1.4 -0.9 TetR/AcrR family transcriptional regulator compare
ABID97_RS23425 -1.4 -1.9 tRNA-Pro compare
ABID97_RS13245 -1.4 -1.2 XRE family transcriptional regulator compare
ABID97_RS24770 -1.4 -6.7 LacI family DNA-binding transcriptional regulator compare
ABID97_RS24045 -1.4 -4.4 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS29030 -1.4 -1.5 3-isopropylmalate dehydratase small subunit compare
ABID97_RS10355 -1.4 -5.6 FadR/GntR family transcriptional regulator compare
ABID97_RS18205 -1.4 -3.1 XRE family transcriptional regulator compare
ABID97_RS25630 -1.4 -1.5 HupE/UreJ family protein compare
ABID97_RS14105 -1.4 -1.3 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS24040 -1.4 -2.1 MarR family transcriptional regulator compare
ABID97_RS21300 -1.4 -3.8 phosphogluconate dehydratase compare
ABID97_RS15495 -1.3 -3.5 aliphatic sulfonate ABC transporter permease SsuC compare
ABID97_RS16695 -1.3 -9.1 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS14850 -1.3 -3.1 P-II family nitrogen regulator compare
ABID97_RS13865 -1.3 -3.2 hypothetical protein compare
ABID97_RS24690 -1.3 -8.5 methyl-accepting chemotaxis protein compare
ABID97_RS23935 -1.3 -2.0 twin transmembrane helix small protein compare
ABID97_RS17970 -1.3 -5.0 protein TolQ compare
ABID97_RS05370 -1.3 -4.4 ATP-binding protein compare
ABID97_RS15585 -1.3 -4.0 sulfate ABC transporter ATP-binding protein compare
ABID97_RS22760 -1.3 -3.8 TetR/AcrR family transcriptional regulator compare
ABID97_RS13450 -1.3 -2.4 TetR/AcrR family transcriptional regulator compare
ABID97_RS10695 -1.3 -4.7 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS08710 -1.3 -5.1 polynucleotide adenylyltransferase PcnB compare
ABID97_RS04505 -1.3 -1.6 ferric iron uptake transcriptional regulator compare
ABID97_RS17895 -1.3 -5.8 transcriptional regulator NrdR compare
ABID97_RS23330 -1.3 -5.3 c-type cytochrome compare
ABID97_RS14115 -1.2 -3.9 dihydrolipoyl dehydrogenase compare
ABID97_RS14285 -1.2 -3.3 phosphoribosyltransferase compare
ABID97_RS02200 -1.2 -9.6 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS04610 -1.2 -6.0 potassium transporter Kup compare
ABID97_RS17200 -1.2 -9.0 ribonuclease R compare
ABID97_RS25405 -1.2 -7.0 16S ribosomal RNA compare
ABID97_RS03630 -1.2 -3.3 P-II family nitrogen regulator compare
ABID97_RS15580 -1.2 -3.1 sulfate ABC transporter permease subunit CysW compare
ABID97_RS22885 -1.2 -1.6 ABC transporter permease compare
ABID97_RS25045 -1.2 -4.2 HAD-IIB family hydrolase compare
ABID97_RS10690 -1.2 -5.8 GlsB/YeaQ/YmgE family stress response membrane protein compare
ABID97_RS06415 -1.2 -7.8 sigma-54 dependent transcriptional regulator compare
ABID97_RS08365 -1.2 -3.1 ribonuclease III compare
ABID97_RS08390 -1.2 -6.0 beta-N-acetylhexosaminidase compare
ABID97_RS16690 -1.2 -3.8 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS08360 -1.2 -6.4 DUF4845 domain-containing protein compare
ABID97_RS12415 -1.2 -8.3 class I poly(R)-hydroxyalkanoic acid synthase compare
ABID97_RS02210 -1.2 -6.0 pilin compare
ABID97_RS23380 -1.2 -7.6 lytic transglycosylase domain-containing protein compare
ABID97_RS06160 -1.1 -5.4 GTP-binding protein compare
ABID97_RS24500 -1.1 -4.8 oxalyl-CoA decarboxylase compare
ABID97_RS17225 -1.1 -6.1 polyhydroxyalkanoate synthesis repressor PhaR compare
ABID97_RS14890 -1.1 -4.9 acetolactate synthase small subunit compare
ABID97_RS12155 -1.1 -6.2 glycogen debranching protein GlgX compare
ABID97_RS07805 -1.1 -2.7 50S ribosomal protein L33 compare
ABID97_RS10685 -1.1 -4.9 hypothetical protein compare
ABID97_RS09595 -1.1 -0.9 Arc family DNA-binding protein compare
ABID97_RS20265 -1.1 -2.6 site-specific tyrosine recombinase XerD compare
ABID97_RS19220 -1.1 -1.3 DNA polymerase Y family protein compare
ABID97_RS27535 -1.1 -1.2 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS14665 -1.1 -2.3 UvrD-helicase domain-containing protein compare
ABID97_RS23270 -1.1 -5.2 pilus assembly protein PilP compare
ABID97_RS19550 -1.1 -1.1 phosphatase PAP2 family protein compare
ABID97_RS07450 -1.0 -1.7 DUF3460 family protein compare
ABID97_RS23265 -1.0 -5.8 type IV pilus secretin PilQ compare
ABID97_RS19645 -1.0 -4.1 glycine cleavage system aminomethyltransferase GcvT compare
ABID97_RS20095 -1.0 -1.4 DNA topoisomerase IV subunit B compare
ABID97_RS15130 -1.0 -1.2 contractile injection system protein, VgrG/Pvc8 family compare
ABID97_RS15505 -1.0 -0.9 ATP-binding cassette domain-containing protein compare
ABID97_RS19065 -1.0 -4.5 GntR family transcriptional regulator compare
ABID97_RS19385 -1.0 -2.8 short-chain fatty acyl-CoA regulator family protein compare
ABID97_RS14075 -1.0 -3.0 glutaredoxin family protein compare
ABID97_RS26160 -1.0 -0.9 nuclear transport factor 2 family protein compare
ABID97_RS06095 -1.0 -6.7 MBL fold metallo-hydrolase compare
ABID97_RS22200 -1.0 -4.5 hydroxyisourate hydrolase compare
ABID97_RS25900 -1.0 -1.7 ABC transporter permease compare
ABID97_RS24055 -1.0 -1.4 TetR/AcrR family transcriptional regulator compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Glycerol in Variovorax sp. OAS795

For carbon source Glycerol across organisms