Experiment set1IT075 for Escherichia coli BW25113
L-Serine nitrogen source
Group: nitrogen sourceMedia: M9 minimal media_noNitrogen + L-Serine (20 mM)
Culturing: Keio_ML9, tube, Aerobic, at 37 (C), shaken=200 rpm
Growth: about 5.5 generations
By: Kelly on 6/19/2014
Media components: 4 g/L D-Glucose, 2 mM Magnesium sulfate, 0.1 mM Calcium chloride, 12.8 g/L Sodium phosphate dibasic heptahydrate, 3 g/L Potassium phosphate monobasic, 0.5 g/L Sodium Chloride
Specific Phenotypes
For 3 genes in this experiment
For nitrogen source L-Serine in Escherichia coli BW25113
For nitrogen source L-Serine across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Aromatic amino acid degradation | 1 |
| Universal stress protein family | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-serine degradation | 3 | 3 | 1 |
| L-tryptophan degradation II (via pyruvate) | 3 | 3 | 1 |
| D-serine degradation | 3 | 3 | 1 |
| L-cysteine degradation II | 3 | 2 | 1 |
| L-methionine degradation II | 3 | 2 | 1 |
| felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis | 5 | 2 | 1 |
| L-threonine degradation I | 6 | 6 | 1 |
| L-methionine biosynthesis II | 6 | 5 | 1 |
| L-isoleucine biosynthesis I (from threonine) | 7 | 7 | 1 |
| glycine betaine degradation III | 7 | 4 | 1 |
| glycine betaine degradation I | 8 | 4 | 1 |
| L-mimosine degradation | 8 | 4 | 1 |
| glutathione-mediated detoxification I | 8 | 3 | 1 |
| superpathway of L-isoleucine biosynthesis I | 13 | 13 | 1 |
| hypoglycin biosynthesis | 14 | 4 | 1 |
| superpathway of L-lysine, L-threonine and L-methionine biosynthesis II | 15 | 13 | 1 |
| superpathway of branched chain amino acid biosynthesis | 17 | 17 | 1 |
| superpathway of L-threonine metabolism | 18 | 16 | 1 |
| purine nucleobases degradation II (anaerobic) | 24 | 17 | 1 |