Experiment set1IT075 for Enterobacter asburiae PDN3

Compare to:

M9 with sucrose and trichloroethylene 76.3 uM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_2027 -5.4 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_2585 -5.3 -2.1 pyrroline-5-carboxylate reductase compare
EX28DRAFT_0921 -4.5 -1.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2265 -4.5 -1.5 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_3667 -4.4 -3.2 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_3224 -4.3 -9.6 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_1740 -4.2 -1.0 Phosphotransferase system cellobiose-specific component IIA compare
EX28DRAFT_2258 -4.2 -1.7 cytochrome d oxidase, subunit II (cydB) compare
EX28DRAFT_3668 -4.1 -7.6 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_0804 -4.1 -1.0 type VI secretion system lysozyme-like protein compare
EX28DRAFT_3375 -4.0 -1.6 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_0046 -4.0 -3.5 shikimate dehydrogenase compare
EX28DRAFT_2651 -4.0 -4.5 glutamate 5-kinase compare
EX28DRAFT_1596 -4.0 -0.9 Protein of unknown function (DUF1019) compare
EX28DRAFT_4266 -3.9 -1.5 Fe2+/Zn2+ uptake regulation proteins compare
EX28DRAFT_2916 -3.8 -5.9 diaminopimelate decarboxylase compare
EX28DRAFT_4331 -3.7 -8.3 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_0843 -3.6 -1.7 nitrate ABC transporter, permease protein compare
EX28DRAFT_3669 -3.5 -5.1 3-isopropylmalate dehydrogenase compare
EX28DRAFT_4446 -3.4 -7.4 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_2699 -3.4 -7.6 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_2851 -3.3 -3.2 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_0536 -3.2 -2.4 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_0374 -3.2 -1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3320 -3.2 -0.7 hypothetical protein compare
EX28DRAFT_0534 -3.2 -4.9 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_4420 -3.2 -1.5 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_4347 -3.1 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4418 -3.0 -5.8 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_0932 -3.0 -4.3 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_4405 -3.0 -0.7 ATP-dependent protease HslVU, peptidase subunit compare
EX28DRAFT_4443 -3.0 -9.7 dihydroxy-acid dehydratase compare
EX28DRAFT_4493 -2.9 -4.5 Transcriptional regulator compare
EX28DRAFT_0538 -2.9 -5.6 histidinol-phosphate aminotransferase compare
EX28DRAFT_2958 -2.9 -0.9 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_0537 -2.8 -8.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_2917 -2.8 -7.9 Transcriptional regulator compare
EX28DRAFT_0539 -2.8 -5.4 histidinol dehydrogenase compare
EX28DRAFT_3070 -2.8 -1.5 Predicted phosphohydrolases compare
EX28DRAFT_0933 -2.8 -8.6 tryptophan synthase, beta subunit compare
EX28DRAFT_3616 -2.7 -2.7 threonine synthase compare
EX28DRAFT_3046 -2.7 -5.8 cystathionine beta-lyase, bacterial compare
EX28DRAFT_3315 -2.7 -0.9 Protein of unknown function (DUF2556) compare
EX28DRAFT_0214 -2.7 -3.5 cysteine synthase A compare
EX28DRAFT_3670 -2.7 -6.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_2701 -2.6 -5.3 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_0876 -2.6 -0.6 hypothetical protein compare
EX28DRAFT_0073 -2.6 -0.8 Negative regulator of sigma E activity compare
EX28DRAFT_0272 -2.6 -1.2 phosphohistidine phosphatase, SixA compare
EX28DRAFT_4445 -2.6 -3.4 Transcriptional regulator compare
EX28DRAFT_2272 -2.5 -6.4 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_3671 -2.5 -5.7 RNA compare
EX28DRAFT_1497 -2.5 -1.3 hypothetical protein compare
EX28DRAFT_4411 -2.5 -9.3 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_3646 -2.5 -3.6 4-hydroxythreonine-4-phosphate dehydrogenase compare
EX28DRAFT_2650 -2.4 -5.5 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_4153 -2.4 -2.0 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_4152 -2.4 -0.7 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_3401 -2.3 -1.5 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_4422 -2.3 -4.9 argininosuccinate lyase compare
EX28DRAFT_0047 -2.3 -2.1 Protein of unknown function (DUF1488) compare
EX28DRAFT_0935 -2.3 -4.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_3418 -2.3 -1.0 Bacterial regulatory helix-turn-helix protein, lysR family compare
EX28DRAFT_2421 -2.3 -0.7 Protein of unknown function (DUF1158) compare
EX28DRAFT_3614 -2.3 -7.2 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_0292 -2.3 -1.9 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_2548 -2.3 -3.1 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_2853 -2.2 -4.7 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_2828 -2.2 -1.3 Toxin SymE, type I toxin-antitoxin system compare
EX28DRAFT_0540 -2.2 -5.9 ATP phosphoribosyltransferase compare
EX28DRAFT_0535 -2.2 -3.9 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_4269 -2.1 -1.1 SOS regulatory protein LexA compare
EX28DRAFT_4297 -2.1 -1.0 cell division ATP-binding protein FtsE compare
EX28DRAFT_1056 -2.1 -1.8 ABC-type polar amino acid transport system, ATPase component compare
EX28DRAFT_0934 -2.1 -5.9 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_3006 -2.1 -0.9 citrate lyase acyl carrier protein compare
EX28DRAFT_2893 -2.1 -4.5 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_4444 -2.1 -4.3 threonine ammonia-lyase, biosynthetic, long form compare
EX28DRAFT_0533 -2.0 -3.9 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_0936 -2.0 -4.5 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_0091 -1.9 -0.7 hypothetical protein compare
EX28DRAFT_2288 -1.9 -1.5 negative regulator of replication initiation SeqA compare
EX28DRAFT_0494 -1.9 -2.6 Protein-tyrosine-phosphatase compare
EX28DRAFT_2852 -1.9 -7.6 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_2859 -1.8 -2.1 hypothetical protein compare
EX28DRAFT_4421 -1.8 -0.9 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_1409 -1.8 -2.2 transcriptional regulator, PaaX family compare
EX28DRAFT_4544 -1.8 -1.4 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_2847 -1.8 -6.6 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_1382 -1.8 -1.4 transcriptional regulator, TetR family compare
EX28DRAFT_1367 -1.8 -1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4482 -1.7 -1.4 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) compare
EX28DRAFT_2723 -1.7 -2.0 SsrA-binding protein compare
EX28DRAFT_4478 -1.7 -2.0 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_0065 -1.7 -1.0 thioredoxin compare
EX28DRAFT_2846 -1.6 -3.9 adenylyl-sulfate kinase compare
EX28DRAFT_4183 -1.6 -2.4 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
EX28DRAFT_0926 -1.6 -1.1 Predicted Fe-S-cluster oxidoreductase compare
EX28DRAFT_3282 -1.6 -1.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3461 -1.6 -2.2 ornithine carbamoyltransferase compare
EX28DRAFT_0545 -1.6 -2.3 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_0469 -1.5 -2.2 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
EX28DRAFT_3702 -1.5 -2.7 nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19) compare
EX28DRAFT_0076 -1.5 -2.4 elongation factor 4 compare
EX28DRAFT_1530 -1.5 -1.5 hypothetical protein compare
EX28DRAFT_1402 -1.5 -1.7 Glyoxalase-like domain compare
EX28DRAFT_2348 -1.5 -0.8 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_0284 -1.5 -5.4 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_1396 -1.5 -0.8 Amidases related to nicotinamidase compare
EX28DRAFT_2252 -1.5 -1.6 TolA protein compare
EX28DRAFT_1941 -1.5 -1.2 Protein of unknown function (DUF4089) compare
EX28DRAFT_0778 -1.5 -0.7 hypothetical protein compare
EX28DRAFT_1300 -1.4 -1.2 hypothetical protein compare
EX28DRAFT_0972 -1.4 -1.2 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_2255 -1.4 -2.2 tol-pal system-associated acyl-CoA thioesterase compare
EX28DRAFT_3710 -1.4 -3.1 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_2848 -1.4 -4.8 sulfate adenylyltransferase, small subunit compare
EX28DRAFT_4299 -1.4 -1.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
EX28DRAFT_0034 -1.4 -1.4 Domain of unknown function (DUF1992) compare
EX28DRAFT_2539 -1.4 -2.9 cytochrome o ubiquinol oxidase subunit II compare
EX28DRAFT_3852 -1.4 -1.4 Protein of unknown function (DUF2810) compare
EX28DRAFT_3244 -1.4 -1.3 Predicted transcriptional regulator, BolA superfamily compare
EX28DRAFT_2472 -1.4 -0.6 Membrane protein implicated in regulation of membrane protease activity compare
EX28DRAFT_0730 -1.3 -1.0 YobH-like protein compare
EX28DRAFT_2043 -1.3 -6.1 transcriptional regulator, AsnC family compare
EX28DRAFT_0145 -1.3 -1.2 Protein of unknown function (DUF1641) compare
EX28DRAFT_2359 -1.3 -1.7 5'-methylthioribose kinase (EC 2.7.1.100) compare
EX28DRAFT_3540 -1.3 -1.9 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare
EX28DRAFT_3137 -1.3 -1.0 Predicted transcriptional regulators compare
EX28DRAFT_0486 -1.3 -3.5 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
EX28DRAFT_0922 -1.3 -1.4 TonB family C-terminal domain compare
EX28DRAFT_2702 -1.3 -4.1 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_0726 -1.3 -1.4 C-terminal peptidase (prc) compare
EX28DRAFT_4160 -1.3 -1.7 uroporphyrin-III C-methyltransferase compare
EX28DRAFT_0228 -1.2 -1.0 tRNA compare
EX28DRAFT_3916 -1.2 -1.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
EX28DRAFT_4440 -1.2 -4.1 acetolactate synthase, large subunit (EC 2.2.1.6) compare
EX28DRAFT_2945 -1.2 -1.2 tyrosine recombinase XerD compare
EX28DRAFT_0594 -1.2 -0.8 T/G mismatch-specific endonuclease (EC 3.1.-.-) compare
EX28DRAFT_0277 -1.2 -2.1 Predicted permeases compare
EX28DRAFT_3275 -1.2 -6.4 Glutamate synthase domain 2 compare
EX28DRAFT_2250 -1.2 -1.7 peptidoglycan-associated lipoprotein compare
EX28DRAFT_0286 -1.2 -0.7 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_2270 -1.2 -0.6 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_3285 -1.2 -2.7 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_1376 -1.2 -1.2 hypothetical protein compare
EX28DRAFT_0242 -1.2 -1.9 type VI secretion protein, VC_A0107 family compare
EX28DRAFT_3708 -1.1 -0.9 Transcriptional regulators compare
EX28DRAFT_4442 -1.1 -2.5 branched-chain amino acid aminotransferase, group I compare
EX28DRAFT_3353 -1.1 -1.4 Fumarate reductase subunit C compare
EX28DRAFT_3377 -1.1 -1.6 rRNA methylase, putative, group 3 compare
EX28DRAFT_1065 -1.1 -1.3 Predicted transcriptional regulators compare
EX28DRAFT_4419 -1.1 -1.1 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_2492 -1.1 -1.7 Protein of unknown function (DUF2496) compare
EX28DRAFT_2890 -1.1 -0.8 tRNA compare
EX28DRAFT_0166 -1.1 -4.0 polyphosphate kinase 1 compare
EX28DRAFT_3613 -1.1 -2.7 RNA compare
EX28DRAFT_1303 -1.1 -1.3 hypothetical protein compare
EX28DRAFT_3862 -1.0 -1.3 Rhodanese-related sulfurtransferase compare
EX28DRAFT_2708 -1.0 -1.0 Protein of unknown function (DUF2946) compare
EX28DRAFT_3494 -1.0 -2.7 Sugar-binding cellulase-like compare
EX28DRAFT_3252 -1.0 -1.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family compare
EX28DRAFT_1932 -1.0 -1.4 Mg/Co/Ni transporter MgtE (contains CBS domain) compare
EX28DRAFT_1772 -1.0 -1.8 methionine-R-sulfoxide reductase compare
EX28DRAFT_0901 -1.0 -0.6 hypothetical protein compare
EX28DRAFT_1420 -1.0 -1.1 phenylacetate-CoA oxygenase, PaaG subunit compare
EX28DRAFT_0706 -1.0 -1.5 Entner-Doudoroff aldolase compare
EX28DRAFT_2849 -1.0 -1.8 uroporphyrin-III C-methyltransferase compare
EX28DRAFT_2695 -1.0 -0.9 pseudouridine synthase, RluA family compare
EX28DRAFT_2509 -1.0 -1.6 transcriptional regulator, LacI family compare
EX28DRAFT_2175 -1.0 -0.8 hypothetical protein compare
EX28DRAFT_0132 -1.0 -1.6 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_1239 -1.0 -0.7 hypothetical protein compare
EX28DRAFT_4384 -1.0 -1.9 Superoxide dismutase compare
EX28DRAFT_1492 -1.0 -2.1 dethiobiotin synthase compare
EX28DRAFT_3643 -1.0 -1.4 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_0593 -1.0 -4.0 DNA-methyltransferase (dcm) compare
EX28DRAFT_0620 -0.9 -0.8 Flagellar protein FliT compare
EX28DRAFT_1909 -0.9 -1.1 Protein of unknown function (DUF3574) compare
EX28DRAFT_4542 -0.9 -0.8 Bacterial nucleoid DNA-binding protein compare
EX28DRAFT_1967 -0.9 -1.7 hypothetical protein compare
EX28DRAFT_3369 -0.9 -0.6 RNA chaperone Hfq compare
EX28DRAFT_1130 -0.9 -1.3 RNA polymerase sigma factor, sigma-70 family compare
EX28DRAFT_2974 -0.9 -2.4 transketolase, bacterial and yeast compare
EX28DRAFT_1620 -0.9 -0.8 hypothetical protein compare
EX28DRAFT_1309 -0.9 -1.5 hypothetical protein compare
EX28DRAFT_0316 -0.9 -1.7 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
EX28DRAFT_1076 -0.9 -0.6 ABC-type branched-chain amino acid transport systems, ATPase component compare
EX28DRAFT_3659 -0.9 -1.4 thiamine ABC transporter, permease protein compare
EX28DRAFT_1050 -0.9 -1.0 luciferase family oxidoreductase, group 1 compare
EX28DRAFT_3740 -0.9 -1.2 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components compare
EX28DRAFT_1121 -0.9 -0.9 Sugar kinases, ribokinase family compare
EX28DRAFT_3434 -0.9 -1.5 addiction module antitoxin, RelB/DinJ family compare
EX28DRAFT_1005 -0.9 -2.2 RNA compare
EX28DRAFT_4383 -0.9 -3.6 transcriptional regulator, XRE family with cupin sensor compare
EX28DRAFT_1500 -0.9 -1.3 Predicted transcriptional regulators compare
EX28DRAFT_3367 -0.9 -2.9 DNA mismatch repair protein MutL compare
EX28DRAFT_1753 -0.9 -3.4 exodeoxyribonuclease III compare
EX28DRAFT_1845 -0.9 -0.7 RNA compare
EX28DRAFT_3214 -0.9 -0.7 RNA compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress Sucrose across organisms