Experiment set1IT073 for Rhizobium sp. OAE497

Compare to:

D-Serine carbon source

200 most important genes:

  gene name fitness t score description  
ABIE40_RS19355 -6.8 -4.7 thioredoxin compare
ABIE40_RS18380 -6.7 -4.6 3-isopropylmalate dehydratase large subunit compare
ABIE40_RS02340 -6.6 -6.5 O-succinylhomoserine sulfhydrylase compare
ABIE40_RS00245 -6.6 -6.5 prephenate dehydratase compare
ABIE40_RS09155 -6.6 -4.6 DUF934 domain-containing protein compare
ABIE40_RS18920 -6.3 -6.1 glutamate 5-kinase compare
ABIE40_RS19050 -6.2 -8.5 3-isopropylmalate dehydrogenase compare
ABIE40_RS13330 -6.1 -5.9 2-isopropylmalate synthase compare
ABIE40_RS17525 -6.1 -3.7 lipoprotein compare
ABIE40_RS09150 -5.9 -13.2 nitrite/sulfite reductase compare
ABIE40_RS19120 -5.7 -24.7 NAD-glutamate dehydrogenase compare
ABIE40_RS09660 -5.7 -9.5 AI-2E family transporter compare
ABIE40_RS18590 -5.7 -14.7 homoserine O-succinyltransferase compare
ABIE40_RS19415 -5.7 -14.7 phosphoenolpyruvate carboxykinase compare
ABIE40_RS11950 -5.6 -7.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE40_RS06555 -5.5 -3.4 phosphoribosylglycinamide formyltransferase compare
ABIE40_RS19040 -5.4 -7.4 3-isopropylmalate dehydratase small subunit compare
ABIE40_RS17530 -5.3 -3.7 diaminopimelate decarboxylase compare
ABIE40_RS09545 -5.3 -3.6 anthranilate phosphoribosyltransferase compare
ABIE40_RS16320 -5.2 -3.6 histidinol-phosphatase compare
ABIE40_RS23250 -5.2 -6.2 hypothetical protein compare
ABIE40_RS03665 -5.2 -3.6 ATP phosphoribosyltransferase compare
ABIE40_RS01970 -5.1 -3.5 acetylglutamate kinase compare
ABIE40_RS03660 -5.0 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
ABIE40_RS19435 -5.0 -3.1 phosphoribosyl-ATP diphosphatase compare
ABIE40_RS10725 -5.0 -3.4 adenosylcobinamide-GDP ribazoletransferase compare
ABIE40_RS20460 -5.0 -3.4 precorrin-3B synthase compare
ABIE40_RS16645 -4.9 -18.9 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS08140 -4.9 -12.6 vitamin B12-dependent ribonucleotide reductase compare
ABIE40_RS09095 -4.8 -4.6 PAS domain-containing sensor histidine kinase compare
ABIE40_RS10720 -4.7 -3.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE40_RS11105 -4.7 -3.2 cobyrinate a,c-diamide synthase compare
ABIE40_RS08865 -4.7 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE40_RS10345 -4.7 -3.2 RNA polymerase-binding protein DksA compare
ABIE40_RS11150 -4.7 -7.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABIE40_RS19440 -4.6 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
ABIE40_RS12925 -4.6 -10.4 pyridoxal phosphate-dependent aminotransferase compare
ABIE40_RS19330 -4.6 -3.2 phosphoribosylanthranilate isomerase compare
ABIE40_RS19460 -4.6 -4.5 imidazoleglycerol-phosphate dehydratase HisB compare
ABIE40_RS02725 -4.6 -6.3 histidinol dehydrogenase compare
ABIE40_RS09725 -4.6 -3.2 phosphoribosyl-AMP cyclohydrolase compare
ABIE40_RS06560 -4.6 -3.2 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE40_RS13285 -4.6 -6.3 N-acetyltransferase compare
ABIE40_RS02325 -4.6 -4.4 ornithine carbamoyltransferase compare
ABIE40_RS17650 -4.5 -3.1 cobaltochelatase subunit CobS compare
ABIE40_RS10180 -4.5 -3.1 phosphoribosylformylglycinamidine synthase subunit PurL compare
ABIE40_RS11175 -4.5 -4.4 cobyric acid synthase compare
ABIE40_RS16070 -4.4 -3.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE40_RS11165 -4.4 -3.0 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABIE40_RS20440 -4.4 -3.0 cobalt-precorrin-6A reductase compare
ABIE40_RS09360 -4.4 -3.0 excinuclease ABC subunit UvrA compare
ABIE40_RS11910 -4.4 -11.3 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
ABIE40_RS11495 -4.4 -3.0 acetolactate synthase 3 large subunit compare
ABIE40_RS02320 -4.3 -3.0 aspartate aminotransferase family protein compare
ABIE40_RS20435 -4.3 -3.0 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
ABIE40_RS17595 -4.3 -3.0 histidinol-phosphate transaminase compare
ABIE40_RS01930 -4.3 -2.6 succinyl-diaminopimelate desuccinylase compare
ABIE40_RS11490 -4.3 -7.5 acetolactate synthase small subunit compare
ABIE40_RS19450 -4.3 -3.0 imidazole glycerol phosphate synthase subunit HisH compare
ABIE40_RS06930 -4.3 -4.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE40_RS11095 -4.2 -2.9 adenosylcobinamide-phosphate synthase CbiB compare
ABIE40_RS13410 -4.2 -5.0 anthranilate synthase compare
ABIE40_RS03485 -4.2 -17.2 MAPEG family protein compare
ABIE40_RS10235 -4.1 -6.4 glutaminase compare
ABIE40_RS06270 -4.1 -7.3 amidophosphoribosyltransferase compare
ABIE40_RS19130 -4.1 -2.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE40_RS01705 -4.0 -10.4 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
ABIE40_RS20455 -4.0 -2.4 precorrin-8X methylmutase compare
ABIE40_RS20450 -4.0 -3.9 precorrin-2 C(20)-methyltransferase compare
ABIE40_RS20430 -4.0 -2.7 precorrin-4 C(11)-methyltransferase compare
ABIE40_RS18925 -4.0 -6.6 glutamate-5-semialdehyde dehydrogenase compare
ABIE40_RS01765 -3.9 -4.6 [protein-PII] uridylyltransferase compare
ABIE40_RS14985 -3.9 -2.7 glycosyltransferase compare
ABIE40_RS06050 -3.9 -5.9 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE40_RS08005 -3.9 -2.6 dihydroxy-acid dehydratase compare
ABIE40_RS20465 -3.8 -2.7 precorrin-6A synthase (deacetylating) compare
ABIE40_RS19445 -3.8 -2.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE40_RS03405 -3.8 -2.6 anti-sigma factor compare
ABIE40_RS12360 -3.8 -13.2 DUF5131 family protein compare
ABIE40_RS17645 -3.8 -2.6 cobaltochelatase subunit CobT compare
ABIE40_RS12135 -3.8 -2.6 methionine synthase compare
ABIE40_RS08645 -3.7 -6.5 LL-diaminopimelate aminotransferase compare
ABIE40_RS11155 -3.7 -7.0 cobaltochelatase subunit CobN compare
ABIE40_RS19480 -3.6 -2.5 DUF1402 family protein compare
ABIE40_RS16170 -3.6 -3.5 DUF882 domain-containing protein compare
ABIE40_RS01135 -3.5 -1.3 50S ribosomal protein L20 compare
ABIE40_RS06730 -3.5 -5.5 riboflavin synthase compare
ABIE40_RS17590 -3.4 -2.3 prephenate/arogenate dehydrogenase family protein compare
ABIE40_RS19700 -3.3 -2.3 MBL fold metallo-hydrolase compare
ABIE40_RS14955 -3.3 -11.2 sugar transferase compare
ABIE40_RS05430 -3.3 -3.1 phosphoribosylamine--glycine ligase compare
ABIE40_RS09140 -3.3 -7.5 siroheme synthase CysG compare
ABIE40_RS18055 -3.3 -3.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABIE40_RS10155 -3.2 -2.2 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE40_RS05660 -3.2 -4.3 response regulator transcription factor compare
ABIE40_RS00580 -3.1 -3.5 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE40_RS08805 -3.1 -13.0 amino acid ABC transporter permease compare
ABIE40_RS20445 -3.1 -1.6 precorrin-3B C(17)-methyltransferase compare
ABIE40_RS09085 -3.1 -6.1 nitrogen regulation protein NR(II) compare
ABIE40_RS20905 -3.0 -8.1 IclR family transcriptional regulator compare
ABIE40_RS08810 -3.0 -11.8 amino acid ABC transporter permease compare
ABIE40_RS22300 -3.0 -6.0 superoxide dismutase compare
ABIE40_RS09170 -3.0 -5.6 cytochrome c biogenesis CcdA family protein compare
ABIE40_RS14990 -2.9 -10.8 glycosyltransferase family 2 protein compare
ABIE40_RS14705 -2.9 -5.4 ABC transporter ATP-binding protein compare
ABIE40_RS00725 -2.9 -4.8 DNA cytosine methyltransferase compare
ABIE40_RS09540 -2.9 -7.5 peptidylprolyl isomerase compare
ABIE40_RS09720 -2.7 -3.7 GTP cyclohydrolase I FolE compare
ABIE40_RS19260 -2.7 -3.5 DNA polymerase III subunit epsilon compare
ABIE40_RS02345 -2.7 -3.6 2'-deoxycytidine 5'-triphosphate deaminase compare
ABIE40_RS14980 -2.7 -5.6 glycoside hydrolase family 16 protein compare
ABIE40_RS08635 -2.7 -11.8 class I poly(R)-hydroxyalkanoic acid synthase compare
ABIE40_RS19395 -2.7 -3.7 PTS sugar transporter subunit IIA compare
ABIE40_RS27110 -2.7 -3.6 helix-turn-helix transcriptional regulator compare
ABIE40_RS14455 -2.6 -3.5 NepR family anti-sigma factor compare
ABIE40_RS08800 -2.6 -8.6 amino acid ABC transporter ATP-binding protein compare
ABIE40_RS30895 -2.5 -1.4 cytochrome o ubiquinol oxidase subunit IV compare
ABIE40_RS18685 -2.5 -4.9 beta-ketoacyl-ACP reductase compare
ABIE40_RS03515 -2.5 -1.7 glutamate--cysteine ligase compare
ABIE40_RS28815 -2.5 -7.1 GNAT family N-acetyltransferase compare
ABIE40_RS14715 -2.5 -9.1 branched-chain amino acid ABC transporter permease LivH compare
ABIE40_RS08815 -2.5 -11.3 amino acid ABC transporter substrate-binding protein compare
ABIE40_RS18880 -2.5 -10.4 UDP-glucose 4-epimerase GalE compare
ABIE40_RS24310 -2.5 -5.9 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS19360 -2.4 -4.3 double-strand break repair helicase AddA compare
ABIE40_RS14710 -2.4 -12.2 high-affinity branched-chain amino acid ABC transporter permease LivM compare
ABIE40_RS16570 -2.4 -3.6 tetratricopeptide repeat protein compare
ABIE40_RS17010 -2.4 -9.3 sugar ABC transporter permease compare
ABIE40_RS01405 -2.4 -6.4 glutathione synthase compare
ABIE40_RS08970 -2.3 -8.3 citrate synthase compare
ABIE40_RS11020 -2.3 -9.4 substrate-binding domain-containing protein compare
ABIE40_RS09320 -2.3 -12.9 extracellular solute-binding protein compare
ABIE40_RS25500 -2.3 -1.4 type II toxin-antitoxin system ParD family antitoxin compare
ABIE40_RS06575 -2.2 -10.6 RNA degradosome polyphosphate kinase compare
ABIE40_RS15560 -2.2 -6.7 phosphoglycerate dehydrogenase compare
ABIE40_RS09645 -2.2 -10.4 triose-phosphate isomerase compare
ABIE40_RS30220 -2.2 -1.6 hypothetical protein compare
ABIE40_RS24490 -2.2 -1.5 flavin reductase compare
ABIE40_RS09090 -2.2 -7.7 nitrogen regulation protein NR(I) compare
ABIE40_RS14700 -2.1 -5.8 ABC transporter ATP-binding protein compare
ABIE40_RS25740 -2.1 -8.3 FadR/GntR family transcriptional regulator compare
ABIE40_RS07740 -2.1 -2.4 elongation factor Tu compare
ABIE40_RS18695 -2.0 -7.7 polyhydroxyalkanoate synthesis repressor PhaR compare
ABIE40_RS00620 -2.0 -8.9 microcin C ABC transporter permease YejB compare
ABIE40_RS06725 -2.0 -4.3 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD compare
ABIE40_RS18440 -2.0 -2.3 Trm112 family protein compare
ABIE40_RS12115 -2.0 -2.1 GntR family transcriptional regulator compare
ABIE40_RS18280 -2.0 -4.5 heme ABC exporter ATP-binding protein CcmA compare
ABIE40_RS13130 -2.0 -8.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE40_RS16655 -2.0 -4.8 creatininase family protein compare
ABIE40_RS01055 -2.0 -5.9 translation elongation factor 4 compare
ABIE40_RS00630 -2.0 -9.8 ABC transporter ATP-binding protein compare
ABIE40_RS11875 -1.9 -2.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABIE40_RS13125 -1.9 -11.1 cytochrome b N-terminal domain-containing protein compare
ABIE40_RS00625 -1.9 -7.5 ABC transporter permease compare
ABIE40_RS11960 -1.9 -2.2 energy-dependent translational throttle protein EttA compare
ABIE40_RS27215 -1.9 -1.3 3'-5' exonuclease compare
ABIE40_RS00930 -1.9 -6.4 ABC transporter permease compare
ABIE40_RS26670 -1.8 -1.1 hypothetical protein compare
ABIE40_RS05685 -1.8 -9.7 heme lyase CcmF/NrfE family subunit compare
ABIE40_RS05365 -1.8 -5.9 tetratricopeptide repeat protein compare
ABIE40_RS17005 -1.8 -6.1 carbohydrate ABC transporter permease compare
ABIE40_RS16210 -1.8 -7.1 homospermidine synthase compare
ABIE40_RS15920 -1.8 -0.9 50S ribosomal protein L31 compare
ABIE40_RS14850 -1.8 -7.3 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE40_RS10200 -1.8 -2.0 Grx4 family monothiol glutaredoxin compare
ABIE40_RS10390 -1.8 -1.9 2Fe-2S iron-sulfur cluster-binding protein compare
ABIE40_RS02240 -1.7 -6.3 GntR family transcriptional regulator compare
ABIE40_RS08935 -1.7 -2.3 RIP metalloprotease RseP compare
ABIE40_RS04465 -1.7 -9.7 sulfate adenylyltransferase subunit CysN compare
ABIE40_RS02730 -1.7 -7.0 UPF0262 family protein compare
ABIE40_RS06475 -1.7 -5.6 CGNR zinc finger domain-containing protein compare
ABIE40_RS04470 -1.7 -10.2 sulfate adenylyltransferase subunit CysD compare
ABIE40_RS16660 -1.7 -3.7 GTP-binding protein compare
ABIE40_RS02075 -1.7 -8.5 ROK family transcriptional regulator compare
ABIE40_RS00490 -1.7 -8.7 DNA polymerase I compare
ABIE40_RS23265 -1.7 -5.6 carboxylating nicotinate-nucleotide diphosphorylase compare
ABIE40_RS18290 -1.7 -7.8 heme ABC transporter permease compare
ABIE40_RS23670 -1.7 -1.9 hypothetical protein compare
ABIE40_RS18300 -1.7 -6.6 DsbE family thiol:disulfide interchange protein compare
ABIE40_RS13120 -1.6 -6.9 cytochrome c1 compare
ABIE40_RS20825 -1.6 -2.1 DUF126 domain-containing protein compare
ABIE40_RS04320 -1.5 -10.2 pyruvate, phosphate dikinase compare
ABIE40_RS00585 -1.5 -5.2 4-hydroxy-tetrahydrodipicolinate reductase compare
ABIE40_RS24380 -1.5 -7.7 FGGY-family carbohydrate kinase compare
ABIE40_RS04115 -1.5 -1.7 ribonuclease HI compare
ABIE40_RS29240 -1.5 -1.6 cold-shock protein compare
ABIE40_RS28785 -1.5 -0.9 ABC-three component system middle component 1 compare
ABIE40_RS00935 -1.5 -5.3 ABC transporter substrate-binding protein compare
ABIE40_RS25355 -1.5 -7.1 PLP-dependent aminotransferase family protein compare
ABIE40_RS05710 -1.5 -9.3 bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase compare
ABIE40_RS04475 -1.5 -6.5 phosphoadenylyl-sulfate reductase compare
ABIE40_RS19365 -1.5 -2.3 double-strand break repair protein AddB compare
ABIE40_RS04070 -1.5 -4.2 heme o synthase compare
ABIE40_RS05665 -1.5 -2.9 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS11530 -1.5 -7.1 protease modulator HflC compare
ABIE40_RS02405 -1.4 -2.4 response regulator transcription factor compare
ABIE40_RS08425 -1.4 -2.4 iron-sulfur cluster insertion protein ErpA compare
ABIE40_RS18975 -1.4 -7.8 S41 family peptidase compare
ABIE40_RS25155 -1.4 -8.1 S-methyl-5-thioribose-1-phosphate isomerase compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source D-Serine in Rhizobium sp. OAE497

For carbon source D-Serine across organisms