Experiment set1IT073 for Agrobacterium fabrum C58

Compare to:

Protocatechuic Acid carbon source

200 most important genes:

  gene name fitness t score description  
Atu1140 -8.6 -6.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1845 -8.4 -5.8 phosphoribosylformylglycinamidine synthase I compare
Atu0038 -8.3 -5.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1687 -8.3 -8.1 anthranilate phosphoribosyltransferase compare
Atu4538 -8.3 -12.6 3-carboxy-cis,cis-muconate cycloisomerase compare
Atu3754 -8.1 -6.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3483 -7.8 -5.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2289 -7.7 -14.0 anthranilate synthase component I and II compare
Atu4547 -7.5 -11.5 3-oxoadipate CoA-transferase subunit A compare
Atu2264 -7.5 -9.0 2-isopropylmalate synthase compare
Atu4541 -7.5 -5.2 carboxymuconolactone decarboxylase compare
Atu4505 -7.5 -11.4 LacI family transcriptional regulator compare
Atu0432 -7.4 -7.2 O-succinylhomoserine sulfhydrylase compare
Atu1844 -7.3 -5.0 Phosphoribosylformylglycinamidine synthetase compare
Atu2036 -7.3 -13.1 acetolactate synthase III, large subunit compare
Atu0679 -7.3 -5.0 ATP phosphoribosyltransferase compare
Atu0099 -7.2 -11.0 prephenate dehydratase compare
Atu2791 -7.1 -8.5 3-isopropylmalate dehydrogenase compare
Atu2709 -7.1 -16.6 3-isopropylmalate dehydratase, large subunit compare
Atu0035 -7.1 -9.7 phosphoenolpyruvate carboxykinase compare
Atu4549 -7.1 -10.8 beta-ketoadipyl CoA thiolase conserved
Atu1750 -7.0 -6.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu1850 -6.9 -6.2 phosphoribosylformylglycinamidine synthetase II compare
Atu1205 -6.8 -12.2 threonine dehydratase compare
Atu1307 -6.8 -6.6 dihydroorotase compare
Atu2718 -6.7 -8.0 homoserine O-succinyltransferase compare
Atu3755 -6.7 -4.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3740 -6.7 -10.2 fructose bisphosphate aldolase compare
Atu3885 -6.7 -9.1 inositol monophosphatase compare
Atu0678 -6.6 -4.5 histidyl-tRNA synthetase compare
Atu1588 -6.6 -9.0 homoserine dehydrogenase compare
Atu4542 -6.5 -14.6 beta-ketoadipate enol-lactone hydrolase conserved
Atu1308 -6.5 -6.3 aspartate carbamoyl transferase catalytic subunit compare
Atu1688 -6.5 -6.3 indole-3-glycerol-phosphate synthase compare
Atu3482 -6.4 -7.9 pantoate--beta-alanine ligase compare
Atu1141 -6.4 -8.7 Phosphoribosylglycinamide synthetase compare
Atu3706 -6.3 -10.6 D-3-phosphoglycerate dehydrogenase compare
Atu0400 -6.2 -4.3 orotate phosphoribosyltransferase compare
Atu4548 -6.2 -11.5 3-oxoadipate CoA-transferase subunit B conserved
Atu2747 -6.2 -12.1 hypothetical protein compare
Atu3731 -6.1 -8.2 5-formyltetrahydrofolate cyclo-ligase compare
Atu0537 -6.0 -7.2 histidinol dehydrogenase compare
Atu2040 -5.9 -8.1 phosphoserine phosphatase compare
Atu0422 -5.9 -3.8 ABC transporter, membrane spanning protein compare
Atu0486 -5.9 -7.0 dihydroorotate dehydrogenase compare
Atu0298 -5.9 -7.0 orotidine 5 compare
Atu0421 -5.9 -2.2 ABC transporter, membrane spanning protein compare
Atu0399 -5.8 -4.0 dihydroorotase compare
Atu0017 -5.8 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3707 -5.6 -4.9 phosphoserine aminotransferase compare
Atu0043 -5.5 -3.8 imidazoleglycerol-phosphate dehydratase compare
Atu3469 -5.4 -3.7 phosphoglyceromutase compare
Atu4096 -5.4 -13.0 nicotinate-nucleotide pyrophosphorylase compare
Atu0039 -5.3 -3.7 imidazoleglycerol-phosphate synthase cyclase compare
Atu1686 -5.3 -20.4 peptidyl-prolyl cis-trans isomerse D compare
Atu1075 -5.3 -8.8 amidophosphoribosyltransferase compare
Atu2015 -5.2 -16.0 aminotransferase compare
Atu2790 -5.1 -2.6 3-isopropylmalate dehydratase, small subunit compare
Atu0647 -5.1 -6.0 phosphoribosylamine--glycine ligase compare
Atu2115 -5.0 -15.4 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0602 -4.9 -15.6 glutamine synthetase compare
Atu2548 -4.9 -20.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3739 -4.7 -4.4 phosphoglycerate kinase compare
Atu0041 -4.7 -3.2 glutamine amidotransferase compare
Atu0723 -4.6 -3.2 FAD dependent oxidoreductase compare
Atu1620 -4.5 -12.9 triosephosphate isomerase compare
Atu0536 -4.5 -10.5 hypothetical protein compare
Atu1589 -4.5 -6.6 aminotransferase, class I compare
Atu2650 -4.5 -14.6 glycerol-3-phosphate dehydrogenase compare
Atu4098 -4.4 -14.9 quinolinate synthetase compare
Atu0601 -4.1 -10.8 oxidoreductase compare
Atu1446 -4.1 -4.4 two component response regulator compare
Atu1464 -4.0 -7.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu3783 -3.9 -19.6 glutamate synthase subunit beta compare
Atu1456 -3.8 -14.4 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1030 -3.7 -2.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0040 -3.7 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4539 -3.7 -13.6 protocatechuate 3,4-dioxygenase alpha chain conserved
Atu3730 -3.6 -2.8 hypothetical protein compare
Atu3784 -3.6 -24.6 glutamate synthase large subunit compare
Atu0030 -3.6 -2.3 phosphocarrier protein HPr compare
Atu0803 -3.5 -17.5 pyruvate,orthophosphate dikinase compare
Atu1462 -3.5 -15.7 glycine cleavage system protein P2 compare
Atu6098 -3.4 -1.3 transcriptional regulator, HTH family compare
Atu1454 -3.3 -9.1 siroheme synthase compare
Atu1463 -3.3 -8.0 glycine cleavage system component H compare
Atu4097 -3.2 -14.6 L-aspartate oxidase compare
Atu1748 -3.1 -13.1 NIFU-like protein compare
Atu4540 -3.0 -4.7 protocatechuate 3,4-dioxygenase subunit beta compare
Atu2020 -3.0 -4.8 transcriptional regulator, TetR family compare
Atu1685 -3.0 -1.9 hypothetical protein compare
Atu0659 -3.0 -7.6 NTP pyrophosphohydrolase, MutT family compare
Atu4518 -2.8 -7.0 branched chain amino acid ABC transporter permease conserved
Atu3289 -2.8 -4.7 thiamine-phosphate pyrophosphorylase compare
Atu4515 -2.8 -9.0 branched chain amino acid ABC transporter ATPase conserved
Atu0999 -2.7 -7.5 magnesium transport protein compare
Atu2125 -2.7 -2.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu4516 -2.6 -12.1 branched chain amino acid ABC transporter ATPase compare
Atu4517 -2.5 -14.9 branched chain amino acid ABC transporter permease conserved
Atu2155 -2.5 -17.0 methionine synthase compare
Atu4519 -2.5 -13.5 branched amino acid ABC transporter substrate-binding protein conserved
Atu4543 -2.5 -7.7 LysR family transcriptional regulator compare
Atu3288 -2.5 -8.7 hydroxyethylthiazole kinase compare
Atu1021 -2.4 -3.8 outer membrane protein compare
Atu2569 -2.4 -13.5 thiamine biosynthesis protein compare
Atu3290 -2.3 -10.3 phosphomethylpyrimidine kinase compare
Atu6114 -2.3 -2.8 hypothetical protein compare
Atu3997 -2.3 -14.6 biotin synthetase compare
Atu1455 -2.2 -4.0 hypothetical protein compare
Atu0434 -2.0 -2.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2209 -2.0 -5.3 pyrroline-5-carboxylate reductase compare
Atu0322 -2.0 -5.1 enoyl CoA hydratase compare
Atu0368 -1.9 -5.1 tRNA pseudouridine synthase I compare
Atu3763 -1.9 -2.7 hypothetical protein compare
Atu0188 -1.9 -3.6 ABC transporter, membrane spanning protein (peptide) compare
Atu2640 -1.9 -6.7 hypothetical protein compare
Atu5451 -1.9 -1.3 hypothetical protein compare
Atu0388 -1.9 -9.0 two component sensor kinase compare
Atu0912 -1.8 -1.6 Na+/H+ antiporter compare
Atu0189 -1.7 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu4173 -1.7 -3.8 phosphoenolpyruvate-protein phosphotransferase compare
Atu4546 -1.7 -5.3 IclR family transcriptional regulator conserved
Atu2831 -1.6 -7.0 glucose inhibited division protein A compare
Atu0029 -1.6 -7.0 S-adenosylhomocysteine hydrolase compare
Atu2045 -1.6 -5.5 HFLK protein compare
Atu0641 -1.6 -3.6 hypothetical protein compare
Atu3998 -1.6 -8.2 8-amino-7-oxononanoate synthase compare
Atu2205 -1.5 -7.4 transcriptional regulator, MarR family compare
Atu1359 -1.5 -1.3 dnaK deletion suppressor protein compare
Atu4711 -1.4 -6.5 two component sensor kinase compare
Atu8115 -1.4 -2.9 Hypothetical Protein compare
Atu3468 -1.4 -1.4 hypothetical protein compare
Atu2682 -1.4 -4.9 hypothetical protein compare
Atu0769 -1.4 -2.2 protoheme IX farnesyltransferase compare
Atu1447 -1.4 -2.1 two component sensor kinase compare
Atu8087 -1.4 -1.5 putative peptidoglycan binding protein compare
Atu4000 -1.3 -10.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu0332 -1.3 -6.7 RNA polymerase sigma-54 factor compare
Atu0977 -1.3 -4.1 serine protease DO-like protease compare
Atu0190 -1.3 -6.0 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2832 -1.2 -3.1 tRNA modification GTPase compare
Atu3732 -1.2 -5.0 hemolysin compare
Atu2684 -1.2 -0.9 hypothetical protein compare
Atu1774 -1.2 -5.4 ABC transporter, substrate binding protein (peptide) compare
Atu1354 -1.2 -1.1 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu4001 -1.1 -5.9 3-oxoacyl-ACP synthase compare
Atu1457 -1.1 -1.3 hypothetical protein compare
Atu5125 -1.1 -3.2 GntR family transcriptional regulator compare
Atu2044 -1.1 -4.0 HFLC protein compare
Atu4635 -1.1 -4.6 hypothetical protein compare
Atu3613 -1.1 -6.6 hypothetical protein compare
Atu3910 -1.1 -3.3 LamB/YcsF family protein compare
Atu1810 -1.0 -1.3 hypothetical protein compare
Atu1163 -1.0 -1.7 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2554 -1.0 -1.8 lysyl-tRNA synthetase compare
Atu0346 -1.0 -2.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2442 -1.0 -1.9 hypothetical protein compare
Atu2368 -1.0 -1.7 hypothetical protein compare
Atu5142 -1.0 -1.3 hypothetical protein compare
Atu0947 -1.0 -4.3 transcriptional regulator, AsnC family compare
Atu1847 -0.9 -1.8 hypothetical protein compare
Atu8131 -0.9 -6.8 pH adaption potassium efflux system protein compare
Atu1891 -0.9 -2.8 cobalamin biosynthesis protein compare
Atu0507 -0.9 -6.0 potassium efflux system protein compare
Atu0837 -0.9 -5.2 transcriptional regulator, MarR family compare
Atu0533 -0.9 -2.2 putative inhibitor of septum formation compare
Atu5034 -0.9 -1.2 hypothetical protein compare
Atu2728 -0.9 -3.9 beta (1-->2) glucan export ATP-binding protein compare
Atu1677 -0.9 -3.5 queuine tRNA-ribosyltransferase compare
Atu3001 -0.8 -1.8 hypothetical protein compare
Atu0361 -0.8 -1.7 transcriptional regulator compare
Atu5513 -0.8 -1.6 cold shock protein compare
Atu8143 -0.8 -2.4 hypothetical protein compare
Atu2802 -0.8 -4.7 precorrin-8X methylmutase compare
Atu3999 -0.8 -1.7 dithiobiotin synthetase compare
Atu0510 -0.8 -5.3 pH adaption potassium efflux system protein compare
Atu1546 -0.8 -4.5 transcriptional regulator, MerR family compare
Atu0153 -0.8 -3.0 transcriptional regulator, Fur family compare
Atu3287 -0.8 -2.6 thiamine biosynthesis associated protein compare
Atu1439 -0.8 -2.0 hypothetical protein compare
Atu4890 -0.8 -1.5 IS426 transposase compare
Atu2532 -0.8 -2.4 transcriptional regulator, MarR family compare
Atu1445 -0.8 -3.1 two component sensor kinase compare
Atu2798 -0.8 -2.8 precorrin-6y methyltransferase compare
Atu0119 -0.8 -1.0 hypothetical protein compare
Atu1056 -0.7 -2.7 hypothetical protein compare
Atu8156 -0.7 -1.9 hypothetical protein compare
Atu8130 -0.7 -4.0 hypothetical protein compare
Atu3698 -0.7 -3.0 thioredoxin compare
Atu0658 -0.7 -3.9 phosphate permease compare
Atu2127 -0.7 -3.8 L-carnitine dehydratase compare
Atu5146 -0.7 -1.4 hypothetical protein compare
Atu1874 -0.7 -2.9 RecA protein compare
Atu8053 -0.7 -1.8 hypothetical protein compare
Atu2799 -0.7 -2.2 precorrin-6x reductase compare
Atu0291 -0.7 -4.0 hypothetical protein compare
Atu1213 -0.7 -1.4 hypothetical protein compare
Atu3727 -0.7 -1.6 hypothetical protein compare
Atu2238 -0.7 -3.6 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0926 -0.7 -3.1 hypothetical protein compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source Protocatechuic Acid in Agrobacterium fabrum C58

For carbon source Protocatechuic Acid across organisms