Experiment set1IT072 for Rhizobium sp. OAE497

Compare to:

D-Serine carbon source

200 most important genes:

  gene name fitness t score description  
ABIE40_RS19415 -7.1 -7.0 phosphoenolpyruvate carboxykinase compare
ABIE40_RS18920 -6.9 -4.8 glutamate 5-kinase compare
ABIE40_RS02340 -6.9 -4.8 O-succinylhomoserine sulfhydrylase compare
ABIE40_RS19355 -6.9 -4.8 thioredoxin compare
ABIE40_RS18380 -6.8 -4.7 3-isopropylmalate dehydratase large subunit compare
ABIE40_RS09155 -6.8 -4.7 DUF934 domain-containing protein compare
ABIE40_RS11950 -6.5 -4.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE40_RS19050 -6.5 -7.7 3-isopropylmalate dehydrogenase compare
ABIE40_RS13330 -6.2 -6.0 2-isopropylmalate synthase compare
ABIE40_RS17525 -6.1 -3.5 lipoprotein compare
ABIE40_RS18590 -6.1 -14.1 homoserine O-succinyltransferase compare
ABIE40_RS00245 -6.0 -10.0 prephenate dehydratase compare
ABIE40_RS09660 -5.9 -9.8 AI-2E family transporter compare
ABIE40_RS09150 -5.8 -15.0 nitrite/sulfite reductase compare
ABIE40_RS19120 -5.7 -25.8 NAD-glutamate dehydrogenase compare
ABIE40_RS06555 -5.6 -3.3 phosphoribosylglycinamide formyltransferase compare
ABIE40_RS09545 -5.4 -3.6 anthranilate phosphoribosyltransferase compare
ABIE40_RS23250 -5.4 -5.3 hypothetical protein compare
ABIE40_RS16320 -5.4 -3.7 histidinol-phosphatase compare
ABIE40_RS16645 -5.3 -19.9 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS03665 -5.3 -3.6 ATP phosphoribosyltransferase compare
ABIE40_RS19040 -5.2 -8.0 3-isopropylmalate dehydratase small subunit compare
ABIE40_RS02725 -5.2 -3.6 histidinol dehydrogenase compare
ABIE40_RS17530 -5.2 -5.1 diaminopimelate decarboxylase compare
ABIE40_RS01970 -5.2 -3.6 acetylglutamate kinase compare
ABIE40_RS20460 -5.1 -3.5 precorrin-3B synthase compare
ABIE40_RS03660 -5.1 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
ABIE40_RS19435 -5.1 -2.9 phosphoribosyl-ATP diphosphatase compare
ABIE40_RS10725 -5.1 -3.5 adenosylcobinamide-GDP ribazoletransferase compare
ABIE40_RS09095 -4.9 -4.8 PAS domain-containing sensor histidine kinase compare
ABIE40_RS19460 -4.9 -3.4 imidazoleglycerol-phosphate dehydratase HisB compare
ABIE40_RS11150 -4.9 -6.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABIE40_RS10720 -4.9 -3.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE40_RS08140 -4.8 -13.5 vitamin B12-dependent ribonucleotide reductase compare
ABIE40_RS18925 -4.8 -4.7 glutamate-5-semialdehyde dehydrogenase compare
ABIE40_RS11105 -4.8 -3.3 cobyrinate a,c-diamide synthase compare
ABIE40_RS06930 -4.7 -3.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE40_RS19440 -4.7 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
ABIE40_RS09725 -4.7 -3.3 phosphoribosyl-AMP cyclohydrolase compare
ABIE40_RS19330 -4.7 -3.3 phosphoribosylanthranilate isomerase compare
ABIE40_RS02325 -4.7 -4.6 ornithine carbamoyltransferase compare
ABIE40_RS10235 -4.7 -5.4 glutaminase compare
ABIE40_RS11175 -4.6 -4.5 cobyric acid synthase compare
ABIE40_RS16070 -4.6 -3.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE40_RS20440 -4.6 -3.1 cobalt-precorrin-6A reductase compare
ABIE40_RS11165 -4.5 -3.0 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABIE40_RS09360 -4.5 -3.1 excinuclease ABC subunit UvrA compare
ABIE40_RS02320 -4.5 -3.1 aspartate aminotransferase family protein compare
ABIE40_RS20435 -4.5 -3.1 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
ABIE40_RS11495 -4.5 -3.1 acetolactate synthase 3 large subunit compare
ABIE40_RS13285 -4.5 -5.8 N-acetyltransferase compare
ABIE40_RS13410 -4.4 -4.3 anthranilate synthase compare
ABIE40_RS17595 -4.4 -3.0 histidinol-phosphate transaminase compare
ABIE40_RS10345 -4.4 -5.2 RNA polymerase-binding protein DksA compare
ABIE40_RS06560 -4.3 -5.1 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE40_RS10180 -4.3 -4.2 phosphoribosylformylglycinamidine synthase subunit PurL compare
ABIE40_RS11155 -4.3 -3.0 cobaltochelatase subunit CobN compare
ABIE40_RS11095 -4.3 -3.0 adenosylcobinamide-phosphate synthase CbiB compare
ABIE40_RS08865 -4.3 -8.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE40_RS18055 -4.3 -2.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABIE40_RS20455 -4.2 -2.4 precorrin-8X methylmutase compare
ABIE40_RS20450 -4.2 -4.1 precorrin-2 C(20)-methyltransferase compare
ABIE40_RS12925 -4.2 -12.8 pyridoxal phosphate-dependent aminotransferase compare
ABIE40_RS19130 -4.2 -2.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE40_RS19450 -4.1 -4.0 imidazole glycerol phosphate synthase subunit HisH compare
ABIE40_RS20430 -4.1 -2.8 precorrin-4 C(11)-methyltransferase compare
ABIE40_RS08645 -4.1 -6.2 LL-diaminopimelate aminotransferase compare
ABIE40_RS00725 -4.1 -3.9 DNA cytosine methyltransferase compare
ABIE40_RS17650 -4.0 -5.5 cobaltochelatase subunit CobS compare
ABIE40_RS11910 -4.0 -11.0 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
ABIE40_RS08800 -4.0 -9.7 amino acid ABC transporter ATP-binding protein compare
ABIE40_RS20465 -4.0 -2.8 precorrin-6A synthase (deacetylating) compare
ABIE40_RS06645 -4.0 -3.4 hypothetical protein compare
ABIE40_RS03405 -4.0 -2.7 anti-sigma factor compare
ABIE40_RS08005 -4.0 -2.7 dihydroxy-acid dehydratase compare
ABIE40_RS19445 -3.9 -2.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE40_RS12135 -3.9 -2.7 methionine synthase compare
ABIE40_RS06730 -3.7 -6.5 riboflavin synthase compare
ABIE40_RS01765 -3.7 -5.1 [protein-PII] uridylyltransferase compare
ABIE40_RS19480 -3.7 -2.6 DUF1402 family protein compare
ABIE40_RS11490 -3.7 -5.9 acetolactate synthase small subunit compare
ABIE40_RS08810 -3.7 -11.8 amino acid ABC transporter permease compare
ABIE40_RS03485 -3.7 -15.2 MAPEG family protein compare
ABIE40_RS17645 -3.6 -3.5 cobaltochelatase subunit CobT compare
ABIE40_RS06270 -3.6 -9.5 amidophosphoribosyltransferase compare
ABIE40_RS14990 -3.6 -12.9 glycosyltransferase family 2 protein compare
ABIE40_RS05430 -3.6 -2.5 phosphoribosylamine--glycine ligase compare
ABIE40_RS17590 -3.5 -2.4 prephenate/arogenate dehydrogenase family protein compare
ABIE40_RS01705 -3.4 -12.2 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
ABIE40_RS01930 -3.4 -2.7 succinyl-diaminopimelate desuccinylase compare
ABIE40_RS19395 -3.3 -3.0 PTS sugar transporter subunit IIA compare
ABIE40_RS14705 -3.2 -7.7 ABC transporter ATP-binding protein compare
ABIE40_RS20445 -3.2 -1.5 precorrin-3B C(17)-methyltransferase compare
ABIE40_RS00580 -3.2 -3.5 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE40_RS10200 -3.1 -2.1 Grx4 family monothiol glutaredoxin compare
ABIE40_RS14980 -3.0 -5.7 glycoside hydrolase family 16 protein compare
ABIE40_RS00630 -3.0 -9.6 ABC transporter ATP-binding protein compare
ABIE40_RS09540 -3.0 -8.0 peptidylprolyl isomerase compare
ABIE40_RS18880 -2.9 -13.4 UDP-glucose 4-epimerase GalE compare
ABIE40_RS08635 -2.9 -13.9 class I poly(R)-hydroxyalkanoic acid synthase compare
ABIE40_RS08815 -2.9 -12.4 amino acid ABC transporter substrate-binding protein compare
ABIE40_RS12360 -2.9 -11.4 DUF5131 family protein compare
ABIE40_RS19700 -2.9 -3.4 MBL fold metallo-hydrolase compare
ABIE40_RS00625 -2.9 -11.0 ABC transporter permease compare
ABIE40_RS09085 -2.8 -4.9 nitrogen regulation protein NR(II) compare
ABIE40_RS14985 -2.8 -2.0 glycosyltransferase compare
ABIE40_RS06050 -2.7 -5.8 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE40_RS10155 -2.7 -2.5 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE40_RS01405 -2.7 -7.0 glutathione synthase compare
ABIE40_RS17010 -2.7 -9.9 sugar ABC transporter permease compare
ABIE40_RS03515 -2.6 -1.8 glutamate--cysteine ligase compare
ABIE40_RS09140 -2.6 -6.4 siroheme synthase CysG compare
ABIE40_RS14955 -2.6 -7.3 sugar transferase compare
ABIE40_RS08805 -2.5 -11.3 amino acid ABC transporter permease compare
ABIE40_RS09320 -2.4 -12.0 extracellular solute-binding protein compare
ABIE40_RS10390 -2.4 -2.5 2Fe-2S iron-sulfur cluster-binding protein compare
ABIE40_RS14700 -2.4 -5.0 ABC transporter ATP-binding protein compare
ABIE40_RS24130 -2.4 -2.8 ABC transporter permease compare
ABIE40_RS14710 -2.4 -11.8 high-affinity branched-chain amino acid ABC transporter permease LivM compare
ABIE40_RS19260 -2.4 -3.2 DNA polymerase III subunit epsilon compare
ABIE40_RS09645 -2.3 -11.2 triose-phosphate isomerase compare
ABIE40_RS22300 -2.2 -6.3 superoxide dismutase compare
ABIE40_RS00620 -2.2 -8.4 microcin C ABC transporter permease YejB compare
ABIE40_RS06575 -2.2 -10.9 RNA degradosome polyphosphate kinase compare
ABIE40_RS05680 -2.2 -7.2 cytochrome c maturation protein CcmE compare
ABIE40_RS11960 -2.2 -2.1 energy-dependent translational throttle protein EttA compare
ABIE40_RS02345 -2.1 -3.2 2'-deoxycytidine 5'-triphosphate deaminase compare
ABIE40_RS19360 -2.1 -4.6 double-strand break repair helicase AddA compare
ABIE40_RS18720 -2.1 -1.8 polyprenyl synthetase family protein compare
ABIE40_RS14715 -2.0 -7.8 branched-chain amino acid ABC transporter permease LivH compare
ABIE40_RS08970 -2.0 -7.8 citrate synthase compare
ABIE40_RS19365 -2.0 -3.3 double-strand break repair protein AddB compare
ABIE40_RS08935 -2.0 -2.4 RIP metalloprotease RseP compare
ABIE40_RS17000 -2.0 -5.4 ABC transporter ATP-binding protein compare
ABIE40_RS15560 -2.0 -4.5 phosphoglycerate dehydrogenase compare
ABIE40_RS09720 -2.0 -4.1 GTP cyclohydrolase I FolE compare
ABIE40_RS22665 -1.9 -2.8 class 1b ribonucleoside-diphosphate reductase subunit beta compare
ABIE40_RS16655 -1.9 -5.1 creatininase family protein compare
ABIE40_RS00935 -1.9 -6.3 ABC transporter substrate-binding protein compare
ABIE40_RS05365 -1.9 -7.1 tetratricopeptide repeat protein compare
ABIE40_RS16570 -1.9 -3.1 tetratricopeptide repeat protein compare
ABIE40_RS12845 -1.8 -3.5 glycosyltransferase family 4 protein compare
ABIE40_RS16210 -1.8 -7.5 homospermidine synthase compare
ABIE40_RS13130 -1.8 -7.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE40_RS05690 -1.8 -4.6 cytochrome c-type biogenesis protein compare
ABIE40_RS06725 -1.8 -5.6 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD compare
ABIE40_RS10140 -1.8 -2.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS04470 -1.8 -10.6 sulfate adenylyltransferase subunit CysD compare
ABIE40_RS09090 -1.8 -5.5 nitrogen regulation protein NR(I) compare
ABIE40_RS11020 -1.8 -7.8 substrate-binding domain-containing protein compare
ABIE40_RS20905 -1.7 -5.1 IclR family transcriptional regulator compare
ABIE40_RS04475 -1.7 -9.7 phosphoadenylyl-sulfate reductase compare
ABIE40_RS13120 -1.7 -6.4 cytochrome c1 compare
ABIE40_RS02580 -1.7 -12.1 acyl-CoA dehydrogenase C-terminal domain-containing protein compare
ABIE40_RS23265 -1.7 -6.2 carboxylating nicotinate-nucleotide diphosphorylase compare
ABIE40_RS04085 -1.7 -6.7 cytochrome c oxidase subunit 3 compare
ABIE40_RS13125 -1.7 -10.8 cytochrome b N-terminal domain-containing protein compare
ABIE40_RS14850 -1.7 -9.0 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE40_RS18695 -1.7 -7.6 polyhydroxyalkanoate synthesis repressor PhaR compare
ABIE40_RS30895 -1.7 -1.6 cytochrome o ubiquinol oxidase subunit IV compare
ABIE40_RS02405 -1.6 -2.6 response regulator transcription factor compare
ABIE40_RS05665 -1.6 -3.1 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS05710 -1.6 -10.2 bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase compare
ABIE40_RS11060 -1.6 -4.0 lipid A biosynthesis lauroyl acyltransferase compare
ABIE40_RS08425 -1.6 -2.1 iron-sulfur cluster insertion protein ErpA compare
ABIE40_RS02240 -1.6 -7.5 GntR family transcriptional regulator compare
ABIE40_RS05685 -1.6 -9.4 heme lyase CcmF/NrfE family subunit compare
ABIE40_RS02730 -1.6 -7.3 UPF0262 family protein compare
ABIE40_RS04320 -1.6 -11.0 pyruvate, phosphate dikinase compare
ABIE40_RS09145 -1.6 -3.2 DUF2849 domain-containing protein compare
ABIE40_RS02305 -1.6 -4.8 phosphate signaling complex protein PhoU compare
ABIE40_RS18290 -1.6 -8.6 heme ABC transporter permease compare
ABIE40_RS09170 -1.5 -4.1 cytochrome c biogenesis CcdA family protein compare
ABIE40_RS25355 -1.5 -7.9 PLP-dependent aminotransferase family protein compare
ABIE40_RS18975 -1.5 -7.6 S41 family peptidase compare
ABIE40_RS18300 -1.5 -7.7 DsbE family thiol:disulfide interchange protein compare
ABIE40_RS04070 -1.5 -4.4 heme o synthase compare
ABIE40_RS05660 -1.5 -2.5 response regulator transcription factor compare
ABIE40_RS24490 -1.5 -1.3 flavin reductase compare
ABIE40_RS11880 -1.5 -2.2 division/cell wall cluster transcriptional repressor MraZ compare
ABIE40_RS18280 -1.5 -3.2 heme ABC exporter ATP-binding protein CcmA compare
ABIE40_RS18570 -1.5 -8.3 N-acetylglucosamine-6-phosphate deacetylase compare
ABIE40_RS18285 -1.5 -3.3 heme exporter protein CcmB compare
ABIE40_RS05155 -1.4 -3.8 DUF5330 domain-containing protein compare
ABIE40_RS04080 -1.4 -7.6 cytochrome c oxidase assembly protein compare
ABIE40_RS04075 -1.4 -3.8 hypothetical protein compare
ABIE40_RS15650 -1.4 -5.2 TIGR00282 family metallophosphoesterase compare
ABIE40_RS06710 -1.4 -3.0 L,D-transpeptidase family protein compare
ABIE40_RS00960 -1.4 -2.7 formyltetrahydrofolate deformylase compare
ABIE40_RS00490 -1.4 -6.8 DNA polymerase I compare
ABIE40_RS18685 -1.4 -4.4 beta-ketoacyl-ACP reductase compare
ABIE40_RS26070 -1.4 -5.8 IclR family transcriptional regulator compare
ABIE40_RS13370 -1.4 -7.0 CDF family cation efflux transporter EmfA compare
ABIE40_RS01055 -1.4 -3.8 translation elongation factor 4 compare
ABIE40_RS00585 -1.3 -4.2 4-hydroxy-tetrahydrodipicolinate reductase compare
ABIE40_RS06915 -1.3 -8.1 COX15/CtaA family protein compare
ABIE40_RS00930 -1.3 -5.6 ABC transporter permease compare
ABIE40_RS25155 -1.3 -7.7 S-methyl-5-thioribose-1-phosphate isomerase compare
ABIE40_RS27930 -1.3 -1.1 nuclear transport factor 2 family protein compare
ABIE40_RS04465 -1.3 -7.7 sulfate adenylyltransferase subunit CysN compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source D-Serine in Rhizobium sp. OAE497

For carbon source D-Serine across organisms