Experiment set1IT072 for Enterobacter asburiae PDN3

Compare to:

M9 with sucrose and trichloroethylene 76.3 uM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_4422 -6.2 -9.7 argininosuccinate lyase compare
EX28DRAFT_3667 -6.1 -4.5 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_2650 -5.9 -13.9 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_3046 -5.8 -11.8 cystathionine beta-lyase, bacterial compare
EX28DRAFT_0934 -5.8 -13.9 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_2027 -5.8 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_2585 -5.7 -2.6 pyrroline-5-carboxylate reductase compare
EX28DRAFT_0538 -5.5 -8.9 histidinol-phosphate aminotransferase compare
EX28DRAFT_4153 -5.5 -3.3 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_0214 -5.4 -4.9 cysteine synthase A compare
EX28DRAFT_4331 -5.3 -13.4 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_2916 -5.1 -9.0 diaminopimelate decarboxylase compare
EX28DRAFT_4446 -5.1 -14.2 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_3224 -5.0 -10.5 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_0292 -4.8 -2.8 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_2701 -4.8 -7.8 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_2265 -4.8 -1.8 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_0046 -4.8 -3.3 shikimate dehydrogenase compare
EX28DRAFT_0537 -4.7 -11.4 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_2651 -4.7 -6.1 glutamate 5-kinase compare
EX28DRAFT_3669 -4.7 -6.5 3-isopropylmalate dehydrogenase compare
EX28DRAFT_0936 -4.7 -6.6 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_4421 -4.7 -1.3 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_4350 -4.5 -1.2 nitrogen regulation protein NR(I) compare
EX28DRAFT_0535 -4.5 -6.4 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_3614 -4.5 -9.7 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_4493 -4.4 -4.4 Transcriptional regulator compare
EX28DRAFT_4443 -4.3 -14.2 dihydroxy-acid dehydratase compare
EX28DRAFT_3668 -4.3 -9.7 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_2851 -4.2 -3.0 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_0539 -4.2 -7.1 histidinol dehydrogenase compare
EX28DRAFT_0534 -4.1 -4.8 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_4419 -4.1 -2.9 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_2548 -3.9 -7.1 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_0933 -3.8 -13.0 tryptophan synthase, beta subunit compare
EX28DRAFT_0540 -3.7 -7.6 ATP phosphoribosyltransferase compare
EX28DRAFT_0533 -3.7 -5.6 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_2272 -3.6 -9.8 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_3670 -3.6 -6.8 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_4156 -3.6 -2.8 ribulose-phosphate 3-epimerase compare
EX28DRAFT_0935 -3.5 -9.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_2699 -3.5 -7.3 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_3646 -3.4 -4.4 4-hydroxythreonine-4-phosphate dehydrogenase compare
EX28DRAFT_0092 -3.4 -1.8 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_4418 -3.4 -7.0 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_2852 -3.3 -9.3 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_2853 -3.2 -6.8 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_3461 -3.2 -8.0 ornithine carbamoyltransferase compare
EX28DRAFT_4411 -3.2 -9.1 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_2893 -3.2 -7.5 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_0536 -3.1 -2.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_1692 -3.1 -1.6 Biofilm development protein YmgB/AriR compare
EX28DRAFT_0922 -3.0 -3.2 TonB family C-terminal domain compare
EX28DRAFT_2917 -3.0 -5.1 Transcriptional regulator compare
EX28DRAFT_4444 -3.0 -8.0 threonine ammonia-lyase, biosynthetic, long form compare
EX28DRAFT_4478 -2.9 -4.7 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_0932 -2.9 -4.5 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_3616 -2.9 -2.8 threonine synthase compare
EX28DRAFT_2252 -2.9 -2.7 TolA protein compare
EX28DRAFT_4420 -2.8 -2.1 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_2846 -2.7 -6.2 adenylyl-sulfate kinase compare
EX28DRAFT_0284 -2.7 -7.2 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_4442 -2.6 -5.4 branched-chain amino acid aminotransferase, group I compare
EX28DRAFT_3276 -2.6 -8.0 glutamate synthase small subunit family protein, proteobacterial compare
EX28DRAFT_3613 -2.6 -5.1 RNA compare
EX28DRAFT_3671 -2.5 -3.9 RNA compare
EX28DRAFT_4445 -2.5 -3.8 Transcriptional regulator compare
EX28DRAFT_2848 -2.4 -9.2 sulfate adenylyltransferase, small subunit compare
EX28DRAFT_2043 -2.3 -6.5 transcriptional regulator, AsnC family compare
EX28DRAFT_3710 -2.3 -6.1 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_3647 -2.3 -4.5 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_0111 -2.2 -2.5 FeS cluster assembly scaffold IscU compare
EX28DRAFT_0816 -2.2 -2.7 Anaphase-promoting complex, cyclosome, subunit 3 compare
EX28DRAFT_2847 -2.2 -9.2 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_0167 -2.2 -2.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_0469 -2.1 -2.6 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
EX28DRAFT_3070 -2.1 -1.6 Predicted phosphohydrolases compare
EX28DRAFT_0545 -2.1 -3.0 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_0331 -2.1 -4.2 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_4515 -2.0 -1.9 hypothetical protein compare
EX28DRAFT_4544 -2.0 -1.9 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_3275 -1.9 -10.4 Glutamate synthase domain 2 compare
EX28DRAFT_4386 -1.9 -2.2 Signal transduction histidine kinase compare
EX28DRAFT_2245 -1.9 -6.3 quinolinate synthetase (EC 2.5.1.72) compare
EX28DRAFT_2849 -1.8 -5.5 uroporphyrin-III C-methyltransferase compare
EX28DRAFT_4405 -1.8 -0.8 ATP-dependent protease HslVU, peptidase subunit compare
EX28DRAFT_4170 -1.8 -5.0 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_0501 -1.8 -1.9 colanic acid biosynthesis acetyltransferase WcaF compare
EX28DRAFT_0730 -1.7 -1.4 YobH-like protein compare
EX28DRAFT_2702 -1.7 -4.5 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_2724 -1.7 -1.0 RNA compare
EX28DRAFT_1986 -1.7 -1.1 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_0291 -1.6 -2.7 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_0972 -1.6 -1.4 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_2531 -1.6 -3.0 endopeptidase La compare
EX28DRAFT_0058 -1.6 -3.7 23S compare
EX28DRAFT_3449 -1.5 -1.7 Predicted membrane protein compare
EX28DRAFT_0069 -1.5 -1.6 Superfamily II DNA and RNA helicases compare
EX28DRAFT_0073 -1.5 -1.2 Negative regulator of sigma E activity compare
EX28DRAFT_0125 -1.5 -0.8 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_3401 -1.5 -0.8 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_0321 -1.5 -0.9 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_4267 -1.5 -1.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2250 -1.5 -1.6 peptidoglycan-associated lipoprotein compare
EX28DRAFT_2786 -1.4 -2.0 amidohydrolase, PncC family compare
EX28DRAFT_4269 -1.4 -1.1 SOS regulatory protein LexA compare
EX28DRAFT_4383 -1.4 -5.9 transcriptional regulator, XRE family with cupin sensor compare
EX28DRAFT_2945 -1.4 -1.7 tyrosine recombinase XerD compare
EX28DRAFT_2425 -1.4 -1.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1771 -1.4 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4413 -1.4 -7.2 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
EX28DRAFT_1650 -1.4 -1.7 ribonuclease T compare
EX28DRAFT_3285 -1.4 -4.2 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_3879 -1.4 -1.6 Glycosyltransferase compare
EX28DRAFT_2378 -1.4 -1.0 ABC-type enterobactin transport system, permease component compare
EX28DRAFT_1124 -1.4 -7.4 sucrose-6-phosphate hydrolase compare
EX28DRAFT_1573 -1.4 -0.7 hypothetical protein compare
EX28DRAFT_1841 -1.4 -0.9 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_1123 -1.3 -4.9 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_2492 -1.3 -2.4 Protein of unknown function (DUF2496) compare
EX28DRAFT_0769 -1.3 -1.2 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_0071 -1.3 -6.8 L-aspartate oxidase (EC 1.4.3.16) compare
EX28DRAFT_2974 -1.3 -3.8 transketolase, bacterial and yeast compare
EX28DRAFT_1005 -1.3 -2.4 RNA compare
EX28DRAFT_4273 -1.3 -2.7 carbohydrate kinase, thermoresistant glucokinase family compare
EX28DRAFT_1000 -1.3 -2.0 intracellular protease, PfpI family compare
EX28DRAFT_0190 -1.2 -0.9 transcriptional regulator, Spx/MgsR family compare
EX28DRAFT_0579 -1.2 -1.4 Uncharacterized protein conserved in bacteria (DUF2256) compare
EX28DRAFT_3345 -1.2 -1.5 Predicted small secreted protein compare
EX28DRAFT_0207 -1.2 -5.1 sulfate ABC transporter, permease protein CysW compare
EX28DRAFT_1620 -1.2 -1.2 hypothetical protein compare
EX28DRAFT_4507 -1.2 -2.5 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_0274 -1.1 -2.2 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific compare
EX28DRAFT_4440 -1.1 -3.6 acetolactate synthase, large subunit (EC 2.2.1.6) compare
EX28DRAFT_3883 -1.1 -1.7 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_0286 -1.1 -1.2 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_1121 -1.1 -2.3 Sugar kinases, ribokinase family compare
EX28DRAFT_3862 -1.1 -1.8 Rhodanese-related sulfurtransferase compare
EX28DRAFT_2527 -1.1 -2.0 acyl-CoA thioester hydrolase, YbgC/YbaW family compare
EX28DRAFT_3574 -1.1 -0.6 Protein of unknown function (DUF1435) compare
EX28DRAFT_4271 -1.1 -0.7 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_0392 -1.1 -1.0 hypothetical protein compare
EX28DRAFT_0399 -1.1 -2.6 Transcriptional regulator compare
EX28DRAFT_3958 -1.1 -0.9 hypothetical protein compare
EX28DRAFT_0206 -1.1 -6.2 sulfate ABC transporter, permease protein CysT compare
EX28DRAFT_0494 -1.0 -0.6 Protein-tyrosine-phosphatase compare
EX28DRAFT_0242 -1.0 -2.2 type VI secretion protein, VC_A0107 family compare
EX28DRAFT_1239 -1.0 -0.9 hypothetical protein compare
EX28DRAFT_0970 -1.0 -3.4 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_0620 -1.0 -0.9 Flagellar protein FliT compare
EX28DRAFT_0166 -1.0 -4.7 polyphosphate kinase 1 compare
EX28DRAFT_0219 -1.0 -2.3 Predicted Na+-dependent transporter compare
EX28DRAFT_3252 -1.0 -1.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family compare
EX28DRAFT_0374 -1.0 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4494 -1.0 -5.9 methionine synthase (B12-independent) (EC 2.1.1.14) compare
EX28DRAFT_0593 -1.0 -4.5 DNA-methyltransferase (dcm) compare
EX28DRAFT_1039 -1.0 -1.3 Sortase and related acyltransferases compare
EX28DRAFT_0438 -1.0 -2.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4300 -1.0 -1.2 Predicted membrane protein compare
EX28DRAFT_2964 -1.0 -2.2 5,10-methenyltetrahydrofolate synthetase compare
EX28DRAFT_0886 -1.0 -2.7 hypothetical protein compare
EX28DRAFT_0861 -1.0 -3.5 Response regulator receiver domain compare
EX28DRAFT_1031 -1.0 -0.9 Protein of unknown function (DUF2566) compare
EX28DRAFT_3423 -1.0 -1.5 Soluble cytochrome b562 compare
EX28DRAFT_2996 -1.0 -1.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2046 -1.0 -1.6 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_0531 -0.9 -3.8 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_4437 -0.9 -2.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2271 -0.9 -1.7 hypothetical protein compare
EX28DRAFT_0724 -0.9 -0.8 GAF domain-containing protein compare
EX28DRAFT_1719 -0.9 -0.8 integration host factor, alpha subunit compare
EX28DRAFT_4351 -0.9 -2.8 Signal transduction histidine kinase, nitrogen specific compare
EX28DRAFT_2008 -0.9 -3.3 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_0208 -0.9 -2.6 sulfate ABC transporter, ATP-binding protein compare
EX28DRAFT_0948 -0.9 -1.0 hypothetical protein compare
EX28DRAFT_1740 -0.9 -0.7 Phosphotransferase system cellobiose-specific component IIA compare
EX28DRAFT_3675 -0.9 -5.2 transcriptional regulator, LacI family compare
EX28DRAFT_1122 -0.9 -4.5 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_2845 -0.9 -0.6 Protein of unknown function (DUF3561) compare
EX28DRAFT_0434 -0.9 -0.9 hypothetical protein compare
EX28DRAFT_0330 -0.9 -2.4 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_4173 -0.9 -1.2 Predicted redox protein, regulator of disulfide bond formation compare
EX28DRAFT_1050 -0.9 -0.9 luciferase family oxidoreductase, group 1 compare
EX28DRAFT_3507 -0.9 -0.8 Response regulator compare
EX28DRAFT_3898 -0.9 -1.0 DNA-directed RNA polymerase subunit omega (EC 2.7.7.6) compare
EX28DRAFT_1909 -0.9 -1.5 Protein of unknown function (DUF3574) compare
EX28DRAFT_1508 -0.9 -1.0 Membrane transporters of cations and cationic drugs compare
EX28DRAFT_0076 -0.9 -2.1 elongation factor 4 compare
EX28DRAFT_2175 -0.9 -0.8 hypothetical protein compare
EX28DRAFT_1309 -0.9 -1.7 hypothetical protein compare
EX28DRAFT_2873 -0.8 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0324 -0.8 -1.3 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_2319 -0.8 -3.2 ABC-type polar amino acid transport system, ATPase component compare
EX28DRAFT_3540 -0.8 -1.5 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare
EX28DRAFT_0081 -0.8 -1.5 DNA replication and repair protein RecO compare
EX28DRAFT_4373 -0.8 -1.0 Predicted nucleic acid-binding protein, contains PIN domain compare
EX28DRAFT_3730 -0.8 -1.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
EX28DRAFT_3109 -0.8 -1.6 Mu-like prophage FluMu protein gp41 compare
EX28DRAFT_2045 -0.8 -0.5 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_1268 -0.8 -1.1 Lysophospholipase L1 and related esterases compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress Sucrose across organisms