Experiment set1IT072 for Agrobacterium fabrum C58

Compare to:

D-Mannose carbon source

200 most important genes:

  gene name fitness t score description  
Atu1140 -8.6 -5.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2289 -7.9 -9.4 anthranilate synthase component I and II compare
Atu1141 -7.6 -5.3 Phosphoribosylglycinamide synthetase compare
Atu1308 -7.6 -5.2 aspartate carbamoyl transferase catalytic subunit compare
Atu2264 -7.5 -10.3 2-isopropylmalate synthase compare
Atu2709 -7.5 -13.5 3-isopropylmalate dehydratase, large subunit compare
Atu0432 -7.3 -8.7 O-succinylhomoserine sulfhydrylase compare
Atu0679 -7.3 -5.1 ATP phosphoribosyltransferase compare
Atu1205 -7.3 -11.2 threonine dehydratase compare
Atu1845 -7.0 -6.9 phosphoribosylformylglycinamidine synthase I compare
Atu2036 -7.0 -11.8 acetolactate synthase III, large subunit compare
Atu1844 -7.0 -4.8 Phosphoribosylformylglycinamidine synthetase compare
Atu2726 -7.0 -18.1 pyruvate carboxylase compare
Atu1588 -6.9 -6.8 homoserine dehydrogenase compare
Atu0099 -6.9 -11.5 prephenate dehydratase compare
Atu2718 -6.9 -6.7 homoserine O-succinyltransferase compare
Atu2156 -6.8 -8.1 hypothetical protein conserved
Atu1075 -6.7 -6.6 amidophosphoribosyltransferase compare
Atu1750 -6.7 -6.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu1307 -6.7 -6.5 dihydroorotase compare
Atu3482 -6.6 -11.1 pantoate--beta-alanine ligase compare
Atu0486 -6.6 -6.4 dihydroorotate dehydrogenase compare
Atu1850 -6.5 -5.6 phosphoribosylformylglycinamidine synthetase II compare
Atu1687 -6.5 -10.9 anthranilate phosphoribosyltransferase compare
Atu3885 -6.5 -8.9 inositol monophosphatase compare
Atu2791 -6.5 -9.9 3-isopropylmalate dehydrogenase compare
Atu1688 -6.4 -6.3 indole-3-glycerol-phosphate synthase compare
Atu0678 -6.4 -6.2 histidyl-tRNA synthetase compare
Atu0400 -6.3 -4.3 orotate phosphoribosyltransferase compare
Atu0038 -6.2 -6.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3706 -6.2 -8.5 D-3-phosphoglycerate dehydrogenase compare
Atu3483 -6.2 -7.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu3754 -6.2 -6.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0401 -6.1 -6.6 fructokinase compare
Atu0298 -6.1 -5.9 orotidine 5 compare
Atu0422 -6.0 -3.7 ABC transporter, membrane spanning protein compare
Atu0537 -6.0 -8.2 histidinol dehydrogenase compare
Atu0017 -5.8 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0030 -5.8 -2.1 phosphocarrier protein HPr compare
Atu0043 -5.5 -3.8 imidazoleglycerol-phosphate dehydratase compare
Atu2040 -5.5 -7.0 phosphoserine phosphatase compare
Atu0039 -5.3 -3.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu0647 -5.3 -5.2 phosphoribosylamine--glycine ligase compare
Atu0399 -5.2 -7.1 dihydroorotase compare
Atu2790 -5.1 -2.5 3-isopropylmalate dehydratase, small subunit compare
Atu1464 -5.0 -8.2 glycine cleavage system T protein, aminomethyltransferase compare
Atu1030 -5.0 -3.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3739 -5.0 -3.6 phosphoglycerate kinase compare
Atu2015 -4.8 -12.4 aminotransferase compare
Atu3707 -4.8 -5.1 phosphoserine aminotransferase compare
Atu1359 -4.7 -1.7 dnaK deletion suppressor protein compare
Atu3731 -4.7 -9.9 5-formyltetrahydrofolate cyclo-ligase compare
Atu0041 -4.7 -3.2 glutamine amidotransferase compare
Atu2747 -4.7 -14.2 hypothetical protein compare
Atu1686 -4.7 -16.2 peptidyl-prolyl cis-trans isomerse D compare
Atu3755 -4.6 -6.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0421 -4.4 -2.3 ABC transporter, membrane spanning protein compare
Atu2548 -4.3 -19.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1462 -4.3 -16.5 glycine cleavage system protein P2 compare
Atu1463 -4.3 -5.8 glycine cleavage system component H compare
Atu3783 -4.0 -16.4 glutamate synthase subunit beta compare
Atu0641 -4.0 -4.1 hypothetical protein compare
Atu2650 -3.9 -12.8 glycerol-3-phosphate dehydrogenase compare
Atu0659 -3.9 -7.9 NTP pyrophosphohydrolase, MutT family compare
Atu3784 -3.9 -25.2 glutamate synthase large subunit compare
Atu1589 -3.8 -8.3 aminotransferase, class I compare
Atu0040 -3.7 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0598 -3.6 -10.3 phosphogluconate dehydratase compare
Atu0602 -3.6 -13.2 glutamine synthetase compare
Atu0601 -3.6 -12.1 oxidoreductase compare
Atu3469 -3.2 -4.4 phosphoglyceromutase compare
Atu0999 -3.0 -10.7 magnesium transport protein compare
Atu0434 -2.8 -3.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1456 -2.8 -12.6 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3997 -2.8 -15.0 biotin synthetase compare
Atu2155 -2.5 -16.5 methionine synthase compare
Atu4098 -2.5 -13.4 quinolinate synthetase compare
Atu1810 -2.4 -1.7 hypothetical protein compare
Atu4096 -2.3 -8.3 nicotinate-nucleotide pyrophosphorylase compare
Atu4097 -2.3 -12.0 L-aspartate oxidase compare
Atu2569 -2.2 -13.1 thiamine biosynthesis protein compare
Atu2205 -2.2 -4.2 transcriptional regulator, MarR family compare
Atu1021 -2.1 -4.5 outer membrane protein compare
Atu4001 -2.1 -10.2 3-oxoacyl-ACP synthase compare
Atu3290 -2.0 -10.1 phosphomethylpyrimidine kinase compare
Atu1620 -2.0 -11.6 triosephosphate isomerase compare
Atu2125 -2.0 -2.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu3998 -2.0 -10.1 8-amino-7-oxononanoate synthase compare
Atu4000 -2.0 -11.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu1454 -2.0 -7.2 siroheme synthase compare
Atu1604 -2.0 -11.4 poly-beta-hydroxybutyrate synthase compare
Atu0769 -1.8 -2.1 protoheme IX farnesyltransferase compare
Atu0368 -1.8 -5.4 tRNA pseudouridine synthase I compare
Atu1748 -1.8 -7.6 NIFU-like protein compare
Atu3288 -1.7 -8.6 hydroxyethylthiazole kinase compare
Atu2127 -1.7 -6.2 L-carnitine dehydratase compare
Atu0086 -1.7 -1.3 ribosome-binding factor A compare
Atu2554 -1.7 -3.1 lysyl-tRNA synthetase compare
Atu3730 -1.6 -1.6 hypothetical protein compare
Atu1446 -1.6 -2.2 two component response regulator compare
Atu2770 -1.6 -4.8 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu2832 -1.6 -4.1 tRNA modification GTPase compare
Atu0388 -1.6 -10.7 two component sensor kinase compare
Atu6098 -1.5 -0.8 transcriptional regulator, HTH family compare
Atu3289 -1.5 -3.5 thiamine-phosphate pyrophosphorylase compare
Atu4317 -1.5 -3.2 TetR family transcriptional regulator compare
Atu4346 -1.5 -4.6 hypothetical protein compare
Atu2045 -1.5 -6.8 HFLK protein compare
Atu2209 -1.5 -3.3 pyrroline-5-carboxylate reductase compare
Atu3763 -1.5 -2.2 hypothetical protein compare
Atu1445 -1.4 -4.5 two component sensor kinase compare
Atu0332 -1.4 -7.5 RNA polymerase sigma-54 factor compare
Atu2831 -1.4 -5.7 glucose inhibited division protein A compare
Atu0029 -1.4 -5.1 S-adenosylhomocysteine hydrolase compare
Atu2044 -1.3 -4.2 HFLC protein compare
Atu4217 -1.3 -1.7 TetR family transcriptional regulator compare
Atu8115 -1.3 -3.1 Hypothetical Protein compare
Atu2684 -1.3 -2.3 hypothetical protein compare
Atu2193 -1.3 -1.2 hypothetical protein compare
Atu3999 -1.2 -1.6 dithiobiotin synthetase compare
Atu3009 -1.2 -1.2 exopolysaccharide production protein compare
Atu2376 -1.2 -0.9 hypothetical protein compare
Atu4173 -1.2 -2.7 phosphoenolpyruvate-protein phosphotransferase compare
Atu0346 -1.2 -2.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4514 -1.2 -3.8 RpiR family transcriptional regulator compare
Atu0777 -1.1 -0.9 hypothetical protein compare
Atu1546 -1.1 -4.1 transcriptional regulator, MerR family compare
Atu1439 -1.1 -2.5 hypothetical protein compare
Atu2368 -1.1 -1.3 hypothetical protein compare
Atu8025 -1.1 -1.7 hypothetical protein compare
Atu4773 -1.1 -1.8 two component response regulator compare
Atu2800 -1.1 -2.3 precorrin-3B C17-methyltransferase compare
Atu4635 -1.1 -6.4 hypothetical protein compare
Atu0792 -1.1 -4.9 hypothetical protein compare
Atu0977 -1.1 -2.8 serine protease DO-like protease compare
Atu1774 -1.1 -6.4 ABC transporter, substrate binding protein (peptide) compare
Atu0062 -1.1 -5.8 transcriptional regulator, ROK family compare
Atu0533 -1.1 -1.5 putative inhibitor of septum formation compare
Atu5142 -1.1 -1.1 hypothetical protein compare
Atu0190 -1.0 -4.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3017 -1.0 -1.2 phosphoglyceromutase compare
Atu4711 -1.0 -3.6 two component sensor kinase compare
Atu2163 -1.0 -1.4 hypothetical protein compare
Atu0876 -1.0 -1.4 superoxide dismutase compare
Atu0544 -1.0 -1.7 hypothetical protein compare
Atu0189 -1.0 -2.5 ABC transporter, membrane spanning protein (peptide) compare
Atu0981 -1.0 -6.7 glutamate-ammonia-ligase adenylyltransferase compare
Atu2207 -1.0 -2.5 two component sensor kinase compare
Atu1847 -1.0 -2.4 hypothetical protein compare
Atu0026 -1.0 -0.7 hypothetical protein compare
Atu0703 -1.0 -2.1 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0354 -0.9 -2.0 ferric uptake regulator compare
Atu2347 -0.9 -4.7 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu0658 -0.9 -5.3 phosphate permease compare
Atu1475 -0.9 -1.7 hypothetical protein compare
Atu1455 -0.9 -2.3 hypothetical protein compare
Atu5107 -0.9 -2.3 hypothetical protein compare
Atu2123 -0.9 -3.4 methylenetetrahydrofolate reductase compare
Atu1685 -0.9 -0.9 hypothetical protein compare
Atu2796 -0.9 -4.3 precorrin-4 C11-methyltransferase compare
Atu0479 -0.9 -3.9 ABC transporter, substrate binding protein (amino acid) compare
Atu4541 -0.9 -3.1 carboxymuconolactone decarboxylase compare
Atu8012 -0.9 -1.5 hypothetical protein compare
Atu1419 -0.9 -3.2 transcriptional regulator, GntR family compare
Atu4446 -0.9 -5.6 hypothetical protein compare
Atu0510 -0.8 -5.2 pH adaption potassium efflux system protein compare
Atu2809 -0.8 -4.3 cobalamin biosynthesis protein compare
Atu8131 -0.8 -5.9 pH adaption potassium efflux system protein compare
Atu2746 -0.8 -2.8 hypothetical protein compare
Atu2348 -0.8 -4.9 sugar binding protein compare
Atu0786 -0.8 -2.7 peptidase, family M16 compare
Atu2555 -0.8 -2.0 L-lysine 2,3-aminomutase compare
Atu2346 -0.8 -5.7 ABC transporter, membrane spanning protein (sugar) compare
Atu3910 -0.8 -1.8 LamB/YcsF family protein compare
Atu1163 -0.8 -1.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2807 -0.8 -3.7 cob(I)alamin adenosyltransferase compare
Atu0508 -0.8 -2.9 PH Adaption potassium efflux system compare
Atu2349 -0.8 -1.7 hypothetical protein compare
Atu0971 -0.8 -3.3 two component sensor kinase compare
Atu8096 -0.8 -1.3 hypothetical protein compare
Atu0912 -0.8 -0.9 Na+/H+ antiporter compare
Atu2239 -0.8 -2.2 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0064 -0.8 -3.7 ABC transporter, membrane spanning protein (sugar) compare
Atu2804 -0.8 -4.7 cobaltochelatase subunit compare
Atu2662 -0.8 -1.1 acetyltransferase compare
Atu5088 -0.8 -1.3 hypothetical protein compare
Atu2805 -0.8 -3.6 cobalamin synthesis protein compare
Atu1028 -0.8 -1.8 hypothetical protein compare
Atu8099 -0.8 -1.6 hypothetical protein compare
Atu1770 -0.7 -4.0 glutamine synthetase compare
Atu6045 -0.7 -0.8 replication protein C compare
Atu0590 -0.7 -4.0 transcriptional regulator repressor compare
Atu2245 -0.7 -4.8 Na+/Pi-cotransporter compare
Atu0065 -0.7 -3.1 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu5173 -0.7 -1.3 dehydrogenase compare
Atu5125 -0.7 -2.7 GntR family transcriptional regulator compare
Atu4674 -0.7 -4.6 GntR family transcriptional regulator compare
Atu6106 -0.7 -1.4 conserved hypothetical protein compare
Atu6114 -0.7 -1.2 hypothetical protein compare
Atu3287 -0.7 -2.5 thiamine biosynthesis associated protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Mannose in Agrobacterium fabrum C58

For carbon source D-Mannose across organisms