Experiment set1IT071 for Rhizobium sp. OAE497

Compare to:

L-Tryptophan carbon source

200 most important genes:

  gene name fitness t score description  
ABIE40_RS11950 -6.5 -4.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE40_RS18920 -6.3 -6.1 glutamate 5-kinase compare
ABIE40_RS18590 -6.2 -12.6 homoserine O-succinyltransferase compare
ABIE40_RS13330 -6.2 -4.3 2-isopropylmalate synthase compare
ABIE40_RS17525 -6.0 -3.1 lipoprotein compare
ABIE40_RS14850 -5.9 -7.0 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE40_RS19040 -5.8 -5.6 3-isopropylmalate dehydratase small subunit compare
ABIE40_RS19050 -5.7 -10.3 3-isopropylmalate dehydrogenase compare
ABIE40_RS12845 -5.7 -3.9 glycosyltransferase family 4 protein compare
ABIE40_RS06555 -5.6 -2.9 phosphoribosylglycinamide formyltransferase compare
ABIE40_RS19355 -5.5 -4.6 thioredoxin compare
ABIE40_RS06730 -5.4 -3.7 riboflavin synthase compare
ABIE40_RS09545 -5.4 -3.2 anthranilate phosphoribosyltransferase compare
ABIE40_RS00245 -5.3 -10.7 prephenate dehydratase compare
ABIE40_RS02340 -5.3 -12.8 O-succinylhomoserine sulfhydrylase compare
ABIE40_RS11060 -5.3 -3.6 lipid A biosynthesis lauroyl acyltransferase compare
ABIE40_RS02725 -5.1 -3.6 histidinol dehydrogenase compare
ABIE40_RS18380 -5.1 -15.3 3-isopropylmalate dehydratase large subunit compare
ABIE40_RS10725 -5.1 -3.5 adenosylcobinamide-GDP ribazoletransferase compare
ABIE40_RS01970 -5.1 -3.5 acetylglutamate kinase compare
ABIE40_RS02325 -5.0 -3.5 ornithine carbamoyltransferase compare
ABIE40_RS03660 -5.0 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
ABIE40_RS19435 -5.0 -2.6 phosphoribosyl-ATP diphosphatase compare
ABIE40_RS02580 -4.9 -20.3 acyl-CoA dehydrogenase C-terminal domain-containing protein compare
ABIE40_RS19490 -4.9 -13.1 malate synthase G compare
ABIE40_RS17530 -4.9 -6.7 diaminopimelate decarboxylase compare
ABIE40_RS04320 -4.9 -17.3 pyruvate, phosphate dikinase compare
ABIE40_RS03260 -4.9 -7.5 short-chain fatty acyl-CoA regulator family protein compare
ABIE40_RS08635 -4.9 -10.4 class I poly(R)-hydroxyalkanoic acid synthase compare
ABIE40_RS10720 -4.9 -2.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE40_RS11105 -4.8 -3.3 cobyrinate a,c-diamide synthase compare
ABIE40_RS19460 -4.8 -3.3 imidazoleglycerol-phosphate dehydratase HisB compare
ABIE40_RS20450 -4.8 -3.3 precorrin-2 C(20)-methyltransferase compare
ABIE40_RS03665 -4.8 -4.7 ATP phosphoribosyltransferase compare
ABIE40_RS02585 -4.8 -14.0 acetyl-CoA C-acetyltransferase compare
ABIE40_RS16320 -4.7 -6.5 histidinol-phosphatase compare
ABIE40_RS11175 -4.7 -3.3 cobyric acid synthase compare
ABIE40_RS09725 -4.7 -3.3 phosphoribosyl-AMP cyclohydrolase compare
ABIE40_RS06930 -4.7 -3.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE40_RS10180 -4.6 -3.2 phosphoribosylformylglycinamidine synthase subunit PurL compare
ABIE40_RS06560 -4.6 -3.2 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE40_RS19330 -4.6 -3.2 phosphoribosylanthranilate isomerase compare
ABIE40_RS11165 -4.5 -2.7 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABIE40_RS09360 -4.5 -3.1 excinuclease ABC subunit UvrA compare
ABIE40_RS10345 -4.5 -4.4 RNA polymerase-binding protein DksA compare
ABIE40_RS20440 -4.5 -3.0 cobalt-precorrin-6A reductase compare
ABIE40_RS17650 -4.5 -3.1 cobaltochelatase subunit CobS compare
ABIE40_RS12860 -4.5 -1.3 Lrp/AsnC family transcriptional regulator compare
ABIE40_RS16645 -4.5 -18.9 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS11495 -4.5 -3.1 acetolactate synthase 3 large subunit compare
ABIE40_RS16070 -4.4 -3.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE40_RS02155 -4.4 -15.6 long-chain fatty acid--CoA ligase compare
ABIE40_RS20435 -4.4 -3.0 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
ABIE40_RS03255 -4.4 -16.0 isocitrate lyase compare
ABIE40_RS02590 -4.4 -10.8 FAD-dependent oxidoreductase compare
ABIE40_RS14855 -4.4 -5.2 NAD-dependent epimerase compare
ABIE40_RS11095 -4.3 -3.0 adenosylcobinamide-phosphate synthase CbiB compare
ABIE40_RS19415 -4.3 -12.2 phosphoenolpyruvate carboxykinase compare
ABIE40_RS17595 -4.3 -2.9 histidinol-phosphate transaminase compare
ABIE40_RS19450 -4.2 -2.9 imidazole glycerol phosphate synthase subunit HisH compare
ABIE40_RS00930 -4.2 -5.0 ABC transporter permease compare
ABIE40_RS08140 -4.2 -16.2 vitamin B12-dependent ribonucleotide reductase compare
ABIE40_RS09150 -4.2 -14.7 nitrite/sulfite reductase compare
ABIE40_RS13410 -4.2 -5.7 anthranilate synthase compare
ABIE40_RS06270 -4.1 -7.9 amidophosphoribosyltransferase compare
ABIE40_RS20455 -4.1 -2.1 precorrin-8X methylmutase compare
ABIE40_RS02730 -4.1 -8.4 UPF0262 family protein compare
ABIE40_RS00935 -4.1 -2.8 ABC transporter substrate-binding protein compare
ABIE40_RS20430 -4.0 -2.8 precorrin-4 C(11)-methyltransferase compare
ABIE40_RS00925 -4.0 -7.2 ABC transporter permease compare
ABIE40_RS18925 -4.0 -6.1 glutamate-5-semialdehyde dehydrogenase compare
ABIE40_RS09660 -4.0 -13.9 AI-2E family transporter compare
ABIE40_RS20465 -3.9 -2.7 precorrin-6A synthase (deacetylating) compare
ABIE40_RS08005 -3.9 -2.7 dihydroxy-acid dehydratase compare
ABIE40_RS11155 -3.9 -6.5 cobaltochelatase subunit CobN compare
ABIE40_RS14985 -3.9 -2.3 glycosyltransferase compare
ABIE40_RS03405 -3.9 -2.7 anti-sigma factor compare
ABIE40_RS03250 -3.8 -1.6 hypothetical protein compare
ABIE40_RS08645 -3.8 -6.8 LL-diaminopimelate aminotransferase compare
ABIE40_RS19445 -3.8 -2.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE40_RS19440 -3.7 -6.8 imidazole glycerol phosphate synthase subunit HisF compare
ABIE40_RS17645 -3.7 -2.6 cobaltochelatase subunit CobT compare
ABIE40_RS11150 -3.7 -8.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABIE40_RS19130 -3.6 -4.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE40_RS09155 -3.6 -4.2 DUF934 domain-containing protein compare
ABIE40_RS19260 -3.5 -2.4 DNA polymerase III subunit epsilon compare
ABIE40_RS24310 -3.5 -8.2 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS18720 -3.5 -2.3 polyprenyl synthetase family protein compare
ABIE40_RS18055 -3.4 -3.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABIE40_RS16170 -3.4 -3.3 DUF882 domain-containing protein compare
ABIE40_RS12135 -3.4 -4.6 methionine synthase compare
ABIE40_RS08935 -3.4 -4.1 RIP metalloprotease RseP compare
ABIE40_RS19700 -3.4 -2.3 MBL fold metallo-hydrolase compare
ABIE40_RS17590 -3.3 -2.3 prephenate/arogenate dehydrogenase family protein compare
ABIE40_RS14990 -3.3 -11.2 glycosyltransferase family 2 protein compare
ABIE40_RS06775 -3.2 -3.7 DUF177 domain-containing protein compare
ABIE40_RS02075 -3.2 -11.8 ROK family transcriptional regulator compare
ABIE40_RS10425 -3.2 -6.2 ABC transporter ATP-binding protein compare
ABIE40_RS16655 -3.2 -7.0 creatininase family protein compare
ABIE40_RS20445 -3.2 -1.3 precorrin-3B C(17)-methyltransferase compare
ABIE40_RS24380 -3.1 -10.4 FGGY-family carbohydrate kinase compare
ABIE40_RS09170 -3.1 -5.9 cytochrome c biogenesis CcdA family protein compare
ABIE40_RS00625 -3.0 -9.3 ABC transporter permease compare
ABIE40_RS10420 -3.0 -6.6 MCE family protein compare
ABIE40_RS00620 -3.0 -9.7 microcin C ABC transporter permease YejB compare
ABIE40_RS19360 -2.9 -4.3 double-strand break repair helicase AddA compare
ABIE40_RS09140 -2.9 -9.0 siroheme synthase CysG compare
ABIE40_RS20905 -2.9 -3.8 IclR family transcriptional regulator compare
ABIE40_RS00630 -2.8 -8.0 ABC transporter ATP-binding protein compare
ABIE40_RS05430 -2.8 -4.1 phosphoribosylamine--glycine ligase compare
ABIE40_RS05680 -2.8 -9.7 cytochrome c maturation protein CcmE compare
ABIE40_RS00580 -2.8 -2.8 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE40_RS18880 -2.7 -10.9 UDP-glucose 4-epimerase GalE compare
ABIE40_RS00725 -2.7 -5.0 DNA cytosine methyltransferase compare
ABIE40_RS00490 -2.7 -11.2 DNA polymerase I compare
ABIE40_RS06725 -2.7 -6.4 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD compare
ABIE40_RS14955 -2.6 -6.5 sugar transferase compare
ABIE40_RS10035 -2.6 -3.6 DUF3971 domain-containing protein compare
ABIE40_RS10430 -2.6 -7.7 MlaE family lipid ABC transporter permease subunit compare
ABIE40_RS24355 -2.6 -6.8 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS17020 -2.6 -7.0 sugar-binding transcriptional regulator compare
ABIE40_RS00450 -2.5 -5.8 molecular chaperone DnaJ compare
ABIE40_RS06050 -2.5 -5.3 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE40_RS09095 -2.5 -2.8 PAS domain-containing sensor histidine kinase compare
ABIE40_RS04350 -2.5 -11.1 MBL fold metallo-hydrolase compare
ABIE40_RS02320 -2.5 -5.5 aspartate aminotransferase family protein compare
ABIE40_RS10155 -2.5 -1.7 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE40_RS10415 -2.5 -5.9 ABC-type transport auxiliary lipoprotein family protein compare
ABIE40_RS14980 -2.5 -5.6 glycoside hydrolase family 16 protein compare
ABIE40_RS22100 -2.5 -1.7 helix-turn-helix domain-containing protein compare
ABIE40_RS12855 -2.4 -6.8 glycosyltransferase family 2 protein compare
ABIE40_RS10140 -2.4 -4.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS22660 -2.4 -4.2 class 1b ribonucleoside-diphosphate reductase subunit alpha compare
ABIE40_RS19395 -2.4 -3.4 PTS sugar transporter subunit IIA compare
ABIE40_RS26865 -2.4 -2.6 hypothetical protein compare
ABIE40_RS09320 -2.3 -12.0 extracellular solute-binding protein compare
ABIE40_RS11020 -2.3 -8.2 substrate-binding domain-containing protein compare
ABIE40_RS13130 -2.3 -9.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE40_RS20460 -2.2 -2.0 precorrin-3B synthase compare
ABIE40_RS21985 -2.2 -3.6 MarR family transcriptional regulator compare
ABIE40_RS10390 -2.2 -2.2 2Fe-2S iron-sulfur cluster-binding protein compare
ABIE40_RS05685 -2.2 -8.9 heme lyase CcmF/NrfE family subunit compare
ABIE40_RS04475 -2.2 -8.8 phosphoadenylyl-sulfate reductase compare
ABIE40_RS09720 -2.1 -4.1 GTP cyclohydrolase I FolE compare
ABIE40_RS12925 -2.1 -7.2 pyridoxal phosphate-dependent aminotransferase compare
ABIE40_RS27250 -2.1 -1.9 hypothetical protein compare
ABIE40_RS18290 -2.1 -8.8 heme ABC transporter permease compare
ABIE40_RS03855 -2.1 -7.0 acyl-CoA dehydrogenase compare
ABIE40_RS09540 -2.1 -4.5 peptidylprolyl isomerase compare
ABIE40_RS09950 -2.0 -10.7 aminomethyl-transferring glycine dehydrogenase compare
ABIE40_RS23250 -2.0 -8.2 hypothetical protein compare
ABIE40_RS12360 -2.0 -7.9 DUF5131 family protein compare
ABIE40_RS01765 -2.0 -5.7 [protein-PII] uridylyltransferase compare
ABIE40_RS29780 -2.0 -1.8 hypothetical protein compare
ABIE40_RS10200 -2.0 -1.6 Grx4 family monothiol glutaredoxin compare
ABIE40_RS09090 -2.0 -5.9 nitrogen regulation protein NR(I) compare
ABIE40_RS18300 -1.9 -6.2 DsbE family thiol:disulfide interchange protein compare
ABIE40_RS11490 -1.9 -4.3 acetolactate synthase small subunit compare
ABIE40_RS04070 -1.9 -4.9 heme o synthase compare
ABIE40_RS04470 -1.9 -10.2 sulfate adenylyltransferase subunit CysD compare
ABIE40_RS12115 -1.9 -1.9 GntR family transcriptional regulator compare
ABIE40_RS15920 -1.9 -0.8 50S ribosomal protein L31 compare
ABIE40_RS04085 -1.9 -6.4 cytochrome c oxidase subunit 3 compare
ABIE40_RS19480 -1.8 -3.0 DUF1402 family protein compare
ABIE40_RS05025 -1.8 -2.8 MucR family transcriptional regulator compare
ABIE40_RS18005 -1.8 -7.4 cell division protein ZapE compare
ABIE40_RS08170 -1.8 -1.3 hypothetical protein compare
ABIE40_RS04465 -1.8 -8.7 sulfate adenylyltransferase subunit CysN compare
ABIE40_RS14455 -1.8 -1.8 NepR family anti-sigma factor compare
ABIE40_RS01055 -1.8 -4.2 translation elongation factor 4 compare
ABIE40_RS18690 -1.7 -6.4 acetyl-CoA C-acetyltransferase compare
ABIE40_RS13125 -1.7 -9.7 cytochrome b N-terminal domain-containing protein compare
ABIE40_RS05995 -1.7 -8.3 MurR/RpiR family transcriptional regulator compare
ABIE40_RS11910 -1.7 -6.0 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
ABIE40_RS15730 -1.7 -1.7 crossover junction endodeoxyribonuclease RuvC compare
ABIE40_RS04065 -1.7 -8.2 cytochrome c oxidase subunit I compare
ABIE40_RS05660 -1.7 -2.4 response regulator transcription factor compare
ABIE40_RS18775 -1.7 -10.3 pyruvate carboxylase compare
ABIE40_RS04060 -1.7 -8.0 cytochrome c oxidase subunit II compare
ABIE40_RS28105 -1.6 -1.7 hypothetical protein compare
ABIE40_RS29515 -1.6 -2.1 hypothetical protein compare
ABIE40_RS19615 -1.6 -1.7 DUF1109 domain-containing protein compare
ABIE40_RS30520 -1.6 -0.9 hypothetical protein compare
ABIE40_RS18640 -1.6 -6.1 M48 family metalloprotease compare
ABIE40_RS28815 -1.5 -4.0 GNAT family N-acetyltransferase compare
ABIE40_RS24690 -1.5 -2.1 transcriptional regulator NanR compare
ABIE40_RS04785 -1.5 -1.6 hypothetical protein compare
ABIE40_RS26670 -1.5 -0.9 hypothetical protein compare
ABIE40_RS18285 -1.5 -4.4 heme exporter protein CcmB compare
ABIE40_RS19385 -1.5 -4.6 adenosylhomocysteinase compare
ABIE40_RS19770 -1.5 -6.0 ABC transporter permease compare
ABIE40_RS30220 -1.5 -1.2 hypothetical protein compare
ABIE40_RS18695 -1.5 -4.1 polyhydroxyalkanoate synthesis repressor PhaR compare
ABIE40_RS04080 -1.5 -6.9 cytochrome c oxidase assembly protein compare
ABIE40_RS11065 -1.5 -2.0 zinc-binding dehydrogenase compare
ABIE40_RS17010 -1.5 -4.5 sugar ABC transporter permease compare
ABIE40_RS22300 -1.5 -3.3 superoxide dismutase compare
ABIE40_RS18280 -1.5 -2.3 heme ABC exporter ATP-binding protein CcmA compare
ABIE40_RS28120 -1.5 -2.6 MFS transporter compare
ABIE40_RS06915 -1.4 -7.1 COX15/CtaA family protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Tryptophan in Rhizobium sp. OAE497

For carbon source L-Tryptophan across organisms