Experiment set1IT071 for Magnetospirillum magneticum AMB-1

Compare to:

30_mag_3

200 most important genes:

  gene name fitness t score description  
AMB_RS11740 -3.6 -18.9 ubiquinone-binding protein compare
AMB_RS04970 -3.5 -10.3 PDZ domain-containing protein compare
AMB_RS04965 -3.1 -12.4 trypsin-like serine protease compare
AMB_RS04955 -3.0 -21.4 cation transporter compare
AMB_RS04960 -3.0 -13.0 Na+/H+ antiporter NhaD compare
AMB_RS04930 -3.0 -23.4 PDZ domain-containing protein compare
AMB_RS04950 -2.7 -10.9 hypothetical protein compare
AMB_RS04945 -2.6 -15.8 hypothetical protein compare
AMB_RS11640 -2.5 -2.4 UbiX family flavin prenyltransferase compare
AMB_RS00010 -2.3 -3.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
AMB_RS04975 -2.2 -10.0 tetratricopeptide repeat protein compare
AMB_RS01190 -2.1 -7.5 UbiD family decarboxylase compare
AMB_RS14175 -2.1 -2.3 COQ9 family protein compare
AMB_RS21265 -1.8 -5.2 c-type cytochrome biogenesis protein CcmI compare
AMB_RS00355 -1.7 -8.9 radical SAM protein compare
AMB_RS23165 -1.7 -3.1 hypothetical protein compare
AMB_RS22490 -1.7 -2.8 YdcF family protein compare
AMB_RS20750 -1.6 -7.1 YbaB/EbfC family nucleoid-associated protein compare
AMB_RS07745 -1.5 -3.4 disulfide bond formation protein B compare
AMB_RS05000 -1.5 -5.8 hypothetical protein compare
AMB_RS19880 -1.5 -4.1 site-specific tyrosine recombinase XerD compare
AMB_RS01830 -1.5 -0.5 hypothetical protein compare
AMB_RS11195 -1.5 -1.8 sulfate adenylyltransferase subunit 2 compare
AMB_RS21290 -1.5 -1.8 DUF4139 domain-containing protein compare
AMB_RS04995 -1.3 -5.9 hypothetical protein compare
AMB_RS19790 -1.3 -4.0 NAD(P)-dependent oxidoreductase compare
AMB_RS14245 -1.3 -0.9 DUF1849 domain-containing protein compare
AMB_RS19875 -1.2 -1.6 hypothetical protein compare
AMB_RS21455 -1.2 -5.0 XRE family transcriptional regulator compare
AMB_RS19545 -1.2 -2.6 elongation factor 4 compare
AMB_RS07865 -1.2 -5.9 ATP-dependent chaperone ClpB compare
AMB_RS23195 -1.1 -3.2 ABC transporter ATP-binding protein compare
AMB_RS24675 -1.1 -1.0 hypothetical protein compare
AMB_RS20835 -1.1 -1.9 DUF2132 domain-containing protein compare
AMB_RS20020 -1.1 -2.0 cell division protein ZapE compare
AMB_RS04895 -1.1 -4.6 hypothetical protein compare
AMB_RS05670 -1.1 -1.7 response regulator compare
AMB_RS23245 -1.1 -1.6 Ni,Fe-hydrogenase maturation factor compare
AMB_RS20350 -1.1 -4.2 aspartate 1-decarboxylase compare
AMB_RS22235 -1.0 -2.1 RNase adaptor protein RapZ compare
AMB_RS15295 -1.0 -1.6 iron donor protein CyaY compare
AMB_RS12320 -1.0 -1.7 septal ring lytic transglycosylase RlpA family protein compare
AMB_RS14035 -1.0 -4.1 endopeptidase La compare
AMB_RS03835 -1.0 -1.8 YicC family protein compare
AMB_RS14855 -1.0 -2.1 molybdate ABC transporter substrate-binding protein compare
AMB_RS20120 -1.0 -2.7 VOC family protein compare
AMB_RS12615 -0.9 -3.1 phytoene/squalene synthetase compare
AMB_RS19230 -0.9 -2.4 molybdopterin-guanine dinucleotide biosynthesis protein B compare
AMB_RS04900 -0.9 -3.8 hypothetical protein compare
AMB_RS06005 -0.9 -2.1 hypothetical protein compare
AMB_RS22800 -0.9 -2.2 glutathione synthase compare
AMB_RS13415 -0.9 -4.6 sulfurtransferase FdhD compare
AMB_RS09095 -0.9 -3.3 hypothetical protein compare
AMB_RS15610 -0.9 -3.6 hypothetical protein compare
AMB_RS22450 -0.9 -5.1 electron transfer flavoprotein-ubiquinone oxidoreductase compare
AMB_RS16100 -0.9 -4.5 RNA polymerase sigma factor RpoH compare
AMB_RS04885 -0.8 -1.9 hypothetical protein compare
AMB_RS21385 -0.8 -4.0 helix-turn-helix transcriptional regulator compare
AMB_RS04650 -0.8 -2.5 hypothetical protein compare
AMB_RS07010 -0.8 -3.6 ATP-dependent helicase compare
AMB_RS13525 -0.8 -1.7 ferredoxin-type protein NapG compare
AMB_RS20955 -0.8 -1.3 zinc ribbon domain-containing protein compare
AMB_RS17345 -0.8 -2.3 rubredoxin compare
AMB_RS03205 -0.8 -1.9 DNA recombination/repair protein RecA compare
AMB_RS05435 -0.8 -2.4 ABC transporter permease compare
AMB_RS02725 -0.8 -1.4 phospholipid carrier-dependent glycosyltransferase compare
AMB_RS17645 -0.8 -5.6 iron-sulfur cluster carrier protein ApbC compare
AMB_RS00815 -0.8 -5.1 hypothetical protein compare
AMB_RS20770 -0.8 -1.8 TrkH family potassium uptake protein compare
AMB_RS14595 -0.8 -2.6 acetoin utilization protein compare
AMB_RS16700 -0.8 -1.0 nuclease PIN compare
AMB_RS00795 -0.8 -5.7 LPS biosynthesis protein compare
AMB_RS23065 -0.8 -2.2 hypothetical protein compare
AMB_RS08580 -0.7 -1.2 hypothetical protein compare
AMB_RS01605 -0.7 -1.7 aspartate aminotransferase family protein compare
AMB_RS03725 -0.7 -2.8 DNA helicase II compare
AMB_RS23090 -0.7 -3.2 NAD(P)-dependent oxidoreductase compare
AMB_RS04920 -0.7 -2.7 MFS transporter compare
AMB_RS20870 -0.7 -0.9 gamma-glutamyl-gamma-aminobutyrate hydrolase compare
AMB_RS17625 -0.7 -4.5 hopanoid biosynthesis associated radical SAM protein HpnJ compare
AMB_RS07645 -0.7 -1.4 hypothetical protein compare
AMB_RS14525 -0.7 -0.6 xylanase/chitin deacetylase compare
AMB_RS00130 -0.7 -3.3 tetratricopeptide repeat protein compare
AMB_RS08465 -0.7 -3.8 ABC transporter ATP-binding protein compare
AMB_RS16340 -0.7 -1.4 penicillin-binding protein 1A compare
AMB_RS00810 -0.7 -2.7 hypothetical protein compare
AMB_RS17335 -0.7 -1.0 N-acyl-L-homoserine lactone synthetase compare
AMB_RS15550 -0.7 -3.6 copper chaperone PCu(A)C compare
AMB_RS05075 -0.7 -0.8 transcriptional regulator compare
AMB_RS10465 -0.7 -1.9 DUF3572 domain-containing protein compare
AMB_RS01875 -0.7 -2.2 hypothetical protein compare
AMB_RS06370 -0.6 -1.2 DNA-binding response regulator compare
AMB_RS16080 -0.6 -1.7 tRNA-Glu compare
AMB_RS12935 -0.6 -0.7 hypothetical protein compare
AMB_RS12920 -0.6 -3.0 exo-beta-1,3-glucanase compare
AMB_RS10140 -0.6 -3.7 sulfate ABC transporter ATP-binding protein compare
AMB_RS08455 -0.6 -4.3 branched-chain amino acid ABC transporter permease compare
AMB_RS21125 -0.6 -3.3 YciI family protein compare
AMB_RS18330 -0.6 -3.0 glycosyl transferase family protein compare
AMB_RS18110 -0.6 -1.3 cAMP-binding protein compare
AMB_RS22375 -0.6 -2.7 hypothetical protein compare
AMB_RS01305 -0.6 -3.8 protocatechuate 4,5-dioxygenase subunit alpha compare
AMB_RS14620 -0.6 -1.5 ArsR family transcriptional regulator compare
AMB_RS01330 -0.6 -2.0 glycosyltransferase family 39 protein compare
AMB_RS04185 -0.6 -3.7 IMP dehydrogenase compare
AMB_RS08460 -0.6 -3.9 branched-chain amino acid ABC transporter permease compare
AMB_RS00800 -0.6 -3.2 nucleoside-diphosphate-sugar pyrophosphorylase compare
AMB_RS22580 -0.6 -3.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
AMB_RS22150 -0.6 -1.0 MarR family transcriptional regulator compare
AMB_RS01855 -0.6 -2.4 hypothetical protein compare
AMB_RS14560 -0.6 -1.2 hypothetical protein compare
AMB_RS01480 -0.6 -1.1 M48 family peptidase compare
AMB_RS13920 -0.6 -0.7 molybdopterin-guanine dinucleotide biosynthesis protein B compare
AMB_RS05405 -0.6 -0.5 4Fe-4S dicluster domain-containing protein compare
AMB_RS07415 -0.6 -0.5 DUF2946 domain-containing protein compare
AMB_RS10555 -0.6 -2.1 DNA repair protein RadA compare
AMB_RS17040 -0.6 -2.6 dissimilatory-type sulfite reductase subunit beta compare
AMB_RS13815 -0.6 -1.3 hypothetical protein compare
AMB_RS22125 -0.6 -3.2 hypothetical protein compare
AMB_RS23330 -0.5 -2.5 hypothetical protein compare
AMB_RS00805 -0.5 -4.3 haloacid dehalogenase compare
AMB_RS00120 -0.5 -1.8 YggS family pyridoxal phosphate-dependent enzyme compare
AMB_RS24250 -0.5 -1.1 hypothetical protein compare
AMB_RS24645 -0.5 -1.4 DUF423 domain-containing protein compare
AMB_RS06755 -0.5 -1.4 hypothetical protein compare
AMB_RS15095 -0.5 -1.2 LamB/YcsF family protein compare
AMB_RS17050 -0.5 -1.4 sulfurtransferase TusC compare
AMB_RS13150 -0.5 -2.2 electron transport complex subunit RsxA compare
AMB_RS06665 -0.5 -1.6 LrgB family protein compare
AMB_RS09125 -0.5 -2.6 ABC transporter ATP-binding protein compare
AMB_RS20015 -0.5 -3.8 exopolyphosphatase compare
AMB_RS23015 -0.5 -1.7 septum formation protein Maf compare
AMB_RS11425 -0.5 -1.3 ribonuclease III compare
AMB_RS01745 -0.5 -1.4 hypothetical protein compare
AMB_RS01910 -0.5 -1.1 head decoration protein compare
AMB_RS08470 -0.5 -1.5 ABC transporter ATP-binding protein compare
AMB_RS09845 -0.5 -1.4 hypothetical protein compare
AMB_RS14810 -0.5 -3.3 VWA domain-containing protein compare
AMB_RS04050 -0.5 -3.7 thiamine pyrophosphate-binding protein compare
AMB_RS12410 -0.5 -3.3 excinuclease ABC subunit UvrA compare
AMB_RS08045 -0.5 -1.9 hypothetical protein compare
AMB_RS10475 -0.5 -0.6 transcriptional regulator NrdR compare
AMB_RS17235 -0.5 -0.7 AsmA family protein compare
AMB_RS10915 -0.5 -1.4 hypothetical protein compare
AMB_RS02660 -0.5 -1.9 SCO family protein compare
AMB_RS14240 -0.5 -1.1 hypothetical protein compare
AMB_RS04025 -0.5 -1.7 glutathione S-transferase compare
AMB_RS02650 -0.5 -2.4 uroporphyrinogen-III C-methyltransferase compare
AMB_RS17930 -0.5 -3.0 4Fe-4S dicluster domain-containing protein compare
AMB_RS21445 -0.5 -2.9 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha compare
AMB_RS20830 -0.5 -1.8 peptide-methionine (R)-S-oxide reductase compare
AMB_RS06305 -0.5 -2.9 4Fe-4S dicluster domain-containing protein compare
AMB_RS03495 -0.5 -2.8 alpha/beta hydrolase compare
AMB_RS06300 -0.5 -3.6 phenylacetyl CoA compare
AMB_RS12755 -0.5 -1.9 exodeoxyribonuclease III compare
AMB_RS01355 -0.5 -1.4 sphingosine kinase compare
AMB_RS23915 -0.4 -1.3 XRE family transcriptional regulator compare
AMB_RS08670 -0.4 -1.1 hypothetical protein compare
AMB_RS13425 -0.4 -1.0 DUF3306 domain-containing protein compare
AMB_RS08325 -0.4 -1.4 hydrogenase maturation factor compare
AMB_RS00160 -0.4 -2.4 hypothetical protein compare
AMB_RS04905 -0.4 -0.7 hypothetical protein compare
AMB_RS24580 -0.4 -2.4 hypothetical protein compare
AMB_RS11780 -0.4 -1.3 glutamate synthase subunit beta compare
AMB_RS12050 -0.4 -0.8 HTH domain-containing protein compare
AMB_RS01165 -0.4 -2.2 hypothetical protein compare
AMB_RS13445 -0.4 -2.2 4Fe-4S dicluster domain-containing protein compare
AMB_RS13535 -0.4 -1.1 hypothetical protein compare
AMB_RS07540 -0.4 -2.4 reverse transcriptase compare
AMB_RS15320 -0.4 -1.9 hypothetical protein compare
AMB_RS20920 -0.4 -1.7 hemerythrin compare
AMB_RS22085 -0.4 -4.1 cytochrome c oxidase accessory protein CcoG compare
AMB_RS21050 -0.4 -0.7 CoA pyrophosphatase compare
AMB_RS03510 -0.4 -2.3 flagellin-like protein compare
AMB_RS19310 -0.4 -1.1 hypothetical protein compare
AMB_RS03990 -0.4 -1.6 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
AMB_RS01285 -0.4 -3.2 dehydrogenase compare
AMB_RS14290 -0.4 -2.3 exopolyphosphatase compare
AMB_RS03875 -0.4 -2.7 NUDIX domain-containing protein compare
AMB_RS16955 -0.4 -1.4 Crp/Fnr family transcriptional regulator compare
AMB_RS09300 -0.4 -2.9 rubrerythrin compare
AMB_RS03625 -0.4 -1.0 hypothetical protein compare
AMB_RS19645 -0.4 -1.6 cAMP-binding protein compare
AMB_RS06645 -0.4 -2.2 NUDIX domain-containing protein compare
AMB_RS09565 -0.4 -1.3 hypothetical protein compare
AMB_RS21535 -0.4 -1.5 cyclic nucleotide-binding domain-containing protein compare
AMB_RS18590 -0.4 -0.7 glycosyltransferase family 2 protein compare
AMB_RS11535 -0.4 -0.7 ChbG/HpnK family deacetylase compare
AMB_RS15605 -0.4 -2.4 ChbG/HpnK family deacetylase compare
AMB_RS16130 -0.4 -1.0 phosphoglycerate dehydrogenase compare
AMB_RS21710 -0.4 -0.9 hypothetical protein compare
AMB_RS20805 -0.4 -1.8 isoprenoid biosynthesis protein ElbB compare
AMB_RS00080 -0.4 -1.3 ammonium transporter compare
AMB_RS10430 -0.4 -1.7 hypothetical protein compare
AMB_RS00680 -0.4 -1.0 3-dehydroquinate synthase compare
AMB_RS03015 -0.4 -1.0 hypothetical protein compare
AMB_RS04910 -0.4 -0.8 hypothetical protein compare
AMB_RS07870 -0.4 -2.0 nitrogenase stabilizing/protective protein nifW compare
AMB_RS17925 -0.4 -3.2 formate dehydrogenase compare
AMB_RS23460 -0.4 -2.0 hemerythrin compare


Specific Phenotypes

None in this experiment

For Magnetospirillum magneticum AMB-1 in magnetic pulldown experiments

For magnetic pulldown Iron across organisms