Experiment set1IT071 for Enterobacter asburiae PDN3

Compare to:

M9 with sucrose and trichloroethylene 76.3 uM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_4153 -5.0 -4.0 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_2027 -5.0 -5.9 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_2265 -4.8 -2.1 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_3669 -4.3 -8.8 3-isopropylmalate dehydrogenase compare
EX28DRAFT_3668 -3.7 -10.5 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_2651 -3.7 -8.0 glutamate 5-kinase compare
EX28DRAFT_2916 -3.6 -13.5 diaminopimelate decarboxylase compare
EX28DRAFT_2585 -3.6 -3.7 pyrroline-5-carboxylate reductase compare
EX28DRAFT_4444 -3.5 -7.3 threonine ammonia-lyase, biosynthetic, long form compare
EX28DRAFT_4493 -3.3 -8.8 Transcriptional regulator compare
EX28DRAFT_2701 -3.2 -8.2 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_0538 -3.2 -11.2 histidinol-phosphate aminotransferase compare
EX28DRAFT_4331 -3.2 -12.9 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_0934 -3.2 -13.5 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_0046 -3.2 -5.1 shikimate dehydrogenase compare
EX28DRAFT_0537 -3.1 -16.6 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_2650 -3.1 -11.1 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_4443 -3.1 -14.8 dihydroxy-acid dehydratase compare
EX28DRAFT_0214 -3.1 -6.9 cysteine synthase A compare
EX28DRAFT_4446 -3.0 -13.8 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_3614 -3.0 -15.1 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_0935 -3.0 -10.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_2917 -3.0 -4.9 Transcriptional regulator compare
EX28DRAFT_3224 -2.9 -9.2 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_3046 -2.9 -10.4 cystathionine beta-lyase, bacterial compare
EX28DRAFT_0292 -2.9 -4.6 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_4418 -2.8 -12.6 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_3670 -2.8 -8.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_0536 -2.7 -3.3 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_0933 -2.7 -11.0 tryptophan synthase, beta subunit compare
EX28DRAFT_3646 -2.7 -8.0 4-hydroxythreonine-4-phosphate dehydrogenase compare
EX28DRAFT_2272 -2.7 -12.6 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_0534 -2.7 -5.5 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_4422 -2.6 -8.8 argininosuccinate lyase compare
EX28DRAFT_3616 -2.6 -3.6 threonine synthase compare
EX28DRAFT_3667 -2.6 -3.9 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_4411 -2.5 -10.2 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_2851 -2.5 -3.7 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_3711 -2.5 -1.9 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_0533 -2.5 -9.1 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_0932 -2.4 -5.5 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_0535 -2.4 -5.3 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_4419 -2.4 -3.1 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_0540 -2.4 -9.4 ATP phosphoribosyltransferase compare
EX28DRAFT_3671 -2.4 -7.2 RNA compare
EX28DRAFT_1986 -2.4 -1.4 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_2252 -2.4 -3.1 TolA protein compare
EX28DRAFT_2699 -2.3 -8.5 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_2853 -2.3 -9.7 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_4445 -2.3 -6.0 Transcriptional regulator compare
EX28DRAFT_4420 -2.3 -2.1 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_0539 -2.2 -11.1 histidinol dehydrogenase compare
EX28DRAFT_2548 -2.2 -3.9 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_3710 -2.2 -6.5 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_2893 -2.1 -8.7 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_4478 -2.1 -5.1 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_1841 -2.0 -1.3 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_4442 -2.0 -5.1 branched-chain amino acid aminotransferase, group I compare
EX28DRAFT_1740 -2.0 -1.3 Phosphotransferase system cellobiose-specific component IIA compare
EX28DRAFT_2852 -1.9 -8.1 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_2250 -1.9 -3.3 peptidoglycan-associated lipoprotein compare
EX28DRAFT_0284 -1.8 -7.1 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_2846 -1.8 -5.2 adenylyl-sulfate kinase compare
EX28DRAFT_0922 -1.8 -2.2 TonB family C-terminal domain compare
EX28DRAFT_3613 -1.7 -6.0 RNA compare
EX28DRAFT_1050 -1.7 -2.0 luciferase family oxidoreductase, group 1 compare
EX28DRAFT_0936 -1.7 -3.8 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_2848 -1.7 -5.8 sulfate adenylyltransferase, small subunit compare
EX28DRAFT_4544 -1.7 -2.2 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_0706 -1.6 -3.4 Entner-Doudoroff aldolase compare
EX28DRAFT_3647 -1.6 -5.0 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_0469 -1.6 -2.2 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
EX28DRAFT_0272 -1.6 -2.5 phosphohistidine phosphatase, SixA compare
EX28DRAFT_0125 -1.6 -1.0 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_4421 -1.5 -1.3 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_4183 -1.5 -2.9 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
EX28DRAFT_1396 -1.5 -1.2 Amidases related to nicotinamidase compare
EX28DRAFT_2849 -1.5 -4.3 uroporphyrin-III C-methyltransferase compare
EX28DRAFT_0065 -1.5 -1.5 thioredoxin compare
EX28DRAFT_0948 -1.4 -1.6 hypothetical protein compare
EX28DRAFT_3079 -1.4 -1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2847 -1.4 -7.9 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_0111 -1.4 -2.3 FeS cluster assembly scaffold IscU compare
EX28DRAFT_0494 -1.4 -1.0 Protein-tyrosine-phosphatase compare
EX28DRAFT_3401 -1.4 -1.8 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_1692 -1.4 -1.3 Biofilm development protein YmgB/AriR compare
EX28DRAFT_3275 -1.4 -9.7 Glutamate synthase domain 2 compare
EX28DRAFT_0972 -1.4 -1.7 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_0374 -1.4 -1.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2702 -1.3 -5.0 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_0545 -1.3 -2.1 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_1620 -1.3 -1.5 hypothetical protein compare
EX28DRAFT_0190 -1.3 -1.4 transcriptional regulator, Spx/MgsR family compare
EX28DRAFT_2043 -1.3 -6.5 transcriptional regulator, AsnC family compare
EX28DRAFT_1845 -1.3 -1.3 RNA compare
EX28DRAFT_3645 -1.2 -3.4 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_2589 -1.2 -0.9 Sigma-S stabilisation anti-adaptor protein compare
EX28DRAFT_4156 -1.2 -0.9 ribulose-phosphate 3-epimerase compare
EX28DRAFT_2492 -1.2 -2.2 Protein of unknown function (DUF2496) compare
EX28DRAFT_3276 -1.2 -6.9 glutamate synthase small subunit family protein, proteobacterial compare
EX28DRAFT_3058 -1.1 -2.4 Signal transduction histidine kinase compare
EX28DRAFT_4440 -1.1 -4.7 acetolactate synthase, large subunit (EC 2.2.1.6) compare
EX28DRAFT_2945 -1.1 -1.6 tyrosine recombinase XerD compare
EX28DRAFT_2240 -1.1 -1.6 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_1772 -1.1 -1.9 methionine-R-sulfoxide reductase compare
EX28DRAFT_3426 -1.1 -1.2 conserved hypothetical protein EF_0831/AHA_3912 compare
EX28DRAFT_2271 -1.1 -2.7 hypothetical protein compare
EX28DRAFT_1123 -1.1 -4.5 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_2425 -1.0 -1.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1414 -1.0 -1.4 phenylacetate degradation probable enoyl-CoA hydratase paaB compare
EX28DRAFT_3687 -1.0 -0.9 D-alanine--D-alanine ligase compare
EX28DRAFT_0480 -1.0 -1.7 Signal transduction histidine kinase compare
EX28DRAFT_4383 -1.0 -5.7 transcriptional regulator, XRE family with cupin sensor compare
EX28DRAFT_2270 -1.0 -0.8 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_1124 -1.0 -6.6 sucrose-6-phosphate hydrolase compare
EX28DRAFT_3879 -1.0 -3.3 Glycosyltransferase compare
EX28DRAFT_4426 -0.9 -0.8 transcriptional regulator, TetR family compare
EX28DRAFT_1508 -0.9 -0.9 Membrane transporters of cations and cationic drugs compare
EX28DRAFT_2531 -0.9 -2.1 endopeptidase La compare
EX28DRAFT_2245 -0.9 -4.2 quinolinate synthetase (EC 2.5.1.72) compare
EX28DRAFT_0730 -0.9 -0.8 YobH-like protein compare
EX28DRAFT_3171 -0.9 -1.4 Predicted membrane protein compare
EX28DRAFT_3461 -0.9 -4.2 ornithine carbamoyltransferase compare
EX28DRAFT_2532 -0.9 -1.9 RNA compare
EX28DRAFT_4386 -0.9 -2.3 Signal transduction histidine kinase compare
EX28DRAFT_4349 -0.9 -1.3 hypothetical protein compare
EX28DRAFT_3883 -0.9 -1.5 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_3901 -0.9 -4.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_0593 -0.9 -6.5 DNA-methyltransferase (dcm) compare
EX28DRAFT_0529 -0.9 -1.8 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_0132 -0.8 -1.7 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_2225 -0.8 -4.1 3-carboxymuconate cyclase compare
EX28DRAFT_1644 -0.8 -1.2 Predicted oxidoreductase compare
EX28DRAFT_1056 -0.8 -1.0 ABC-type polar amino acid transport system, ATPase component compare
EX28DRAFT_4170 -0.8 -4.4 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_0207 -0.8 -3.0 sulfate ABC transporter, permease protein CysW compare
EX28DRAFT_1932 -0.8 -1.8 Mg/Co/Ni transporter MgtE (contains CBS domain) compare
EX28DRAFT_3708 -0.8 -1.0 Transcriptional regulators compare
EX28DRAFT_2214 -0.8 -1.3 malonyl-acyl carrier protein O-methyltransferase BioC compare
EX28DRAFT_3449 -0.8 -1.0 Predicted membrane protein compare
EX28DRAFT_3033 -0.8 -3.0 transcriptional regulator, TetR family compare
EX28DRAFT_0166 -0.8 -4.3 polyphosphate kinase 1 compare
EX28DRAFT_3730 -0.8 -2.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
EX28DRAFT_1438 -0.8 -1.3 Transcriptional regulators compare
EX28DRAFT_3453 -0.8 -0.7 YhcH/YjgK/YiaL family protein compare
EX28DRAFT_2175 -0.8 -1.8 hypothetical protein compare
EX28DRAFT_2126 -0.8 -2.4 transcriptional regulator, DeoR family compare
EX28DRAFT_3285 -0.7 -3.0 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_1031 -0.7 -1.0 Protein of unknown function (DUF2566) compare
EX28DRAFT_4515 -0.7 -1.4 hypothetical protein compare
EX28DRAFT_1305 -0.7 -2.4 hypothetical protein compare
EX28DRAFT_3564 -0.7 -2.5 Transcriptional regulators compare
EX28DRAFT_1122 -0.7 -4.3 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_0399 -0.7 -3.2 Transcriptional regulator compare
EX28DRAFT_3320 -0.7 -0.5 hypothetical protein compare
EX28DRAFT_0274 -0.7 -1.8 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific compare
EX28DRAFT_1402 -0.7 -1.3 Glyoxalase-like domain compare
EX28DRAFT_0206 -0.7 -2.4 sulfate ABC transporter, permease protein CysT compare
EX28DRAFT_1915 -0.7 -2.4 pyrimidine utilization protein B compare
EX28DRAFT_0531 -0.7 -3.0 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_0321 -0.7 -0.6 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_1295 -0.7 -1.0 Protein of unknown function (DUF2570) compare
EX28DRAFT_0084 -0.7 -2.0 4Fe-4S dicluster domain compare
EX28DRAFT_2644 -0.7 -1.7 Ogr/Delta-like zinc finger compare
EX28DRAFT_1236 -0.7 -1.4 Transcriptional regulator compare
EX28DRAFT_1742 -0.7 -1.5 PTS system, lactose/cellobiose family IIB component compare
EX28DRAFT_0165 -0.7 -2.9 exopolyphosphatase compare
EX28DRAFT_3045 -0.7 -1.9 tonB-system energizer ExbB compare
EX28DRAFT_0116 -0.7 -1.4 FeS assembly protein IscX compare
EX28DRAFT_0058 -0.7 -2.3 23S compare
EX28DRAFT_2530 -0.7 -0.8 Bacterial nucleoid DNA-binding protein compare
EX28DRAFT_4175 -0.7 -1.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2985 -0.7 -2.9 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_2102 -0.7 -3.1 Nitroreductase compare
EX28DRAFT_0180 -0.7 -1.0 Peroxiredoxin compare
EX28DRAFT_3954 -0.7 -4.2 acetolactate synthase, large subunit (EC 2.2.1.6) compare
EX28DRAFT_1376 -0.7 -0.8 hypothetical protein compare
EX28DRAFT_1131 -0.7 -1.2 hypothetical protein compare
EX28DRAFT_1530 -0.6 -1.2 hypothetical protein compare
EX28DRAFT_0724 -0.6 -0.7 GAF domain-containing protein compare
EX28DRAFT_2160 -0.6 -1.8 P pilus assembly protein, pilin FimA compare
EX28DRAFT_0715 -0.6 -1.7 Protein of unknown function (DUF2511) compare
EX28DRAFT_0081 -0.6 -3.1 DNA replication and repair protein RecO compare
EX28DRAFT_2472 -0.6 -0.5 Membrane protein implicated in regulation of membrane protease activity compare
EX28DRAFT_0816 -0.6 -0.7 Anaphase-promoting complex, cyclosome, subunit 3 compare
EX28DRAFT_2008 -0.6 -3.3 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_4224 -0.6 -1.5 Predicted double-glycine peptidase compare
EX28DRAFT_4380 -0.6 -0.7 Protein of unknown function (DUF1471) compare
EX28DRAFT_1360 -0.6 -1.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2527 -0.6 -1.4 acyl-CoA thioester hydrolase, YbgC/YbaW family compare
EX28DRAFT_1510 -0.6 -1.8 hypothetical protein compare
EX28DRAFT_0208 -0.6 -1.8 sulfate ABC transporter, ATP-binding protein compare
EX28DRAFT_2885 -0.6 -2.3 Bacterial protein of unknown function (DUF903) compare
EX28DRAFT_2371 -0.6 -1.0 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
EX28DRAFT_1330 -0.6 -1.1 hypothetical protein compare
EX28DRAFT_0167 -0.6 -1.0 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_3089 -0.6 -0.6 Transcriptional regulators compare
EX28DRAFT_1128 -0.6 -0.6 hypothetical protein compare
EX28DRAFT_1946 -0.6 -0.8 Transcriptional regulators compare
EX28DRAFT_2974 -0.6 -2.5 transketolase, bacterial and yeast compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress Sucrose across organisms