Experiment set1IT071 for Echinicola vietnamensis KMM 6221, DSM 17526

Compare to:

marine broth with Sodium Chlorite 0.15 mM

200 most detrimental genes:

  gene name fitness t score description  
Echvi_1292 +1.1 6.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Echvi_0378 +1.1 4.0 hypothetical protein compare
Echvi_0718 +1.1 3.4 segregation and condensation protein B compare
Echvi_3764 +1.1 2.0 Predicted transcriptional regulators compare
Echvi_1854 +0.9 1.6 tRNA compare
Echvi_1227 +0.9 1.0 hypothetical protein compare
Echvi_1332 +0.9 2.7 single-stranded-DNA-specific exonuclease RecJ compare
Echvi_3246 +0.9 2.6 hypothetical protein compare
Echvi_2553 +0.9 2.7 hypothetical protein compare
Echvi_0945 +0.9 2.6 hypothetical protein compare
Echvi_2198 +0.9 1.0 hypothetical protein compare
Echvi_2249 +0.9 1.6 hypothetical protein compare
Echvi_4611 +0.8 1.7 hypothetical protein compare
Echvi_3813 +0.8 1.9 Uncharacterized protein conserved in bacteria compare
Echvi_1742 +0.8 1.0 Uncharacterized protein conserved in archaea compare
Echvi_1206 +0.8 3.4 TIGR00730 family protein compare
Echvi_4362 +0.8 2.8 hypothetical protein compare
Echvi_4325 +0.8 1.7 hypothetical protein compare
Echvi_1266 +0.7 2.1 putative solute:sodium symporter small subunit compare
Echvi_2225 +0.7 0.7 Transposase DDE domain./Transposase domain (DUF772). compare
Echvi_2543 +0.7 2.5 hypothetical protein compare
Echvi_1119 +0.7 2.2 hypothetical protein compare
Echvi_1752 +0.7 1.8 hypothetical protein compare
Echvi_1033 +0.7 2.8 hypothetical protein compare
Echvi_1293 +0.7 3.9 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Echvi_4161 +0.7 0.8 hypothetical protein compare
Echvi_2330 +0.7 2.4 hypothetical protein compare
Echvi_0144 +0.7 1.0 TIGR00159 family protein compare
Echvi_1356 +0.6 0.7 hypothetical protein compare
Echvi_3444 +0.6 1.2 tRNA compare
Echvi_2186 +0.6 1.8 rRNA methylase, putative, group 3 compare
Echvi_0728 +0.6 1.0 hypothetical protein compare
Echvi_2385 +0.6 0.5 hypothetical protein compare
Echvi_2174 +0.6 2.4 hypothetical protein compare
Echvi_1607 +0.6 0.9 Acylphosphatases compare
Echvi_0715 +0.6 0.7 hypothetical protein compare
Echvi_4218 +0.6 1.6 RND family efflux transporter, MFP subunit compare
Echvi_1736 +0.6 1.2 hypothetical protein compare
Echvi_3922 +0.6 1.8 hypothetical protein compare
Echvi_2194 +0.6 1.6 ADP-ribose pyrophosphatase compare
Echvi_2617 +0.6 2.9 N-acetylglutamate synthase and related acetyltransferases compare
Echvi_3358 +0.6 1.1 hypothetical protein compare
Echvi_0215 +0.5 1.6 phosphomethylpyrimidine kinase compare
Echvi_4370 +0.5 2.5 hypothetical protein compare
Echvi_4047 +0.5 2.2 hypothetical protein compare
Echvi_4465 +0.5 1.7 hypothetical protein compare
Echvi_4114 +0.5 2.3 hypothetical protein compare
Echvi_2517 +0.5 1.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Echvi_3243 +0.5 1.1 hypothetical protein compare
Echvi_1080 +0.5 1.3 hypothetical protein compare
Echvi_3934 +0.5 1.5 hypothetical protein compare
Echvi_0900 +0.5 2.2 Protein of unknown function (DUF2905). compare
Echvi_3703 +0.5 1.4 hypothetical protein compare
Echvi_0330 +0.5 1.6 hypothetical protein compare
Echvi_0054 +0.5 2.0 Glycosyltransferases, probably involved in cell wall biogenesis compare
Echvi_1588 +0.5 1.8 deoxyribose-phosphate aldolase compare
Echvi_3109 +0.5 1.1 hypothetical protein compare
Echvi_4244 +0.5 2.0 hypothetical protein compare
Echvi_4389 +0.5 4.5 hypothetical protein compare
Echvi_3456 +0.5 1.0 Uncharacterized protein conserved in bacteria compare
Echvi_0973 +0.5 2.1 hypothetical protein compare
Echvi_0692 +0.5 1.0 hypothetical protein compare
Echvi_0123 +0.5 2.0 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
Echvi_2355 +0.5 1.7 Predicted membrane protein compare
Echvi_2219 +0.5 1.7 ADP-ribose pyrophosphatase compare
Echvi_1544 +0.5 2.2 META domain. compare
Echvi_4534 +0.5 1.5 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_3325 +0.5 1.1 hypothetical protein compare
Echvi_3639 +0.5 1.2 Methionine synthase I (cobalamin-dependent), methyltransferase domain compare
Echvi_0089 +0.5 1.5 methylmalonyl-CoA epimerase compare
Echvi_3241 +0.5 0.4 hypothetical protein compare
Echvi_4644 +0.5 1.0 S23 ribosomal protein. compare
Echvi_2516 +0.5 1.9 imidazoleglycerol phosphate synthase, cyclase subunit compare
Echvi_2298 +0.5 0.9 hypothetical protein compare
Echvi_1170 +0.5 1.5 Predicted membrane protein compare
Echvi_3120 +0.5 1.9 hypothetical protein compare
Echvi_3745 +0.5 1.6 hypothetical protein compare
Echvi_3292 +0.5 0.8 hypothetical protein compare
Echvi_0757 +0.5 0.9 hypothetical protein compare
Echvi_1422 +0.5 1.1 hypothetical protein compare
Echvi_2644 +0.5 2.1 hypothetical protein compare
Echvi_0721 +0.5 1.5 Uncharacterized protein conserved in bacteria compare
Echvi_2365 +0.5 1.1 Response regulator containing a CheY-like receiver domain and an HD-GYP domain compare
Echvi_4010 +0.5 1.6 DsrE/DsrF-like family. compare
Echvi_4562 +0.4 1.1 hypothetical protein compare
Echvi_1381 +0.4 2.3 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_1567 +0.4 1.4 Uncharacterized conserved protein compare
Echvi_4361 +0.4 1.6 hypothetical protein compare
Echvi_2937 +0.4 0.7 Uncharacterized conserved protein compare
Echvi_1487 +0.4 3.8 hypothetical protein compare
Echvi_1297 +0.4 0.9 hypothetical protein compare
Echvi_3236 +0.4 2.0 Domain of unknown function (DUF1896). compare
Echvi_1505 +0.4 2.4 Uncharacterized conserved protein compare
Echvi_2464 +0.4 2.1 Universal stress protein UspA and related nucleotide-binding proteins compare
Echvi_1646 +0.4 2.1 hypothetical protein compare
Echvi_3284 +0.4 2.0 Homoserine dehydrogenase compare
Echvi_3310 +0.4 1.4 Predicted Fe-S-cluster oxidoreductase compare
Echvi_2202 +0.4 1.7 branched-chain amino acid aminotransferase, group II compare
Echvi_0829 +0.4 1.3 Membrane-associated phospholipid phosphatase compare
Echvi_3788 +0.4 1.8 hypothetical protein compare
Echvi_0003 +0.4 1.4 LAO/AO transport system ATPase compare
Echvi_3856 +0.4 2.0 hypothetical protein compare
Echvi_2733 +0.4 2.2 hypothetical protein compare
Echvi_3013 +0.4 2.2 hypothetical protein compare
Echvi_3498 +0.4 0.9 hypothetical protein compare
Echvi_3928 +0.4 1.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Echvi_1424 +0.4 1.7 Predicted lactoylglutathione lyase compare
Echvi_3753 +0.4 0.9 hypothetical protein compare
Echvi_4383 +0.4 0.5 hypothetical protein compare
Echvi_1315 +0.4 3.0 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase compare
Echvi_0090 +0.4 0.9 Iron-sulfur cluster assembly accessory protein compare
Echvi_2894 +0.4 1.3 YceI-like domain. compare
Echvi_2851 +0.4 1.7 hypothetical protein compare
Echvi_1228 +0.4 2.4 Putative homoserine kinase type II (protein kinase fold) compare
Echvi_1361 +0.4 1.0 hypothetical protein compare
Echvi_1015 +0.4 1.3 Retron-type reverse transcriptase compare
Echvi_1189 +0.4 1.8 Threonine dehydratase compare
Echvi_1348 +0.4 1.2 phage/plasmid-related protein TIGR03299 compare
Echvi_2503 +0.4 1.1 hypothetical protein compare
Echvi_2134 +0.4 0.8 hypothetical protein compare
Echvi_1019 +0.4 1.6 hypothetical protein compare
Echvi_0293 +0.4 1.0 hypothetical protein compare
Echvi_3505 +0.4 0.7 hypothetical protein compare
Echvi_2443 +0.4 1.3 hypothetical protein compare
Echvi_4666 +0.4 1.3 Cold shock proteins compare
Echvi_0440 +0.4 0.6 DNA repair proteins compare
Echvi_0428 +0.4 1.6 Helix-turn-helix. compare
Echvi_4595 +0.4 0.7 hypothetical protein compare
Echvi_3594 +0.4 0.8 hypothetical protein compare
Echvi_4029 +0.4 1.6 Thiol:disulfide interchange protein compare
Echvi_2642 +0.4 2.0 DNA binding domain, excisionase family compare
Echvi_3765 +0.4 1.6 hypothetical protein compare
Echvi_0648 +0.4 1.6 hypothetical protein compare
Echvi_0732 +0.4 0.7 hypothetical protein compare
Echvi_3889 +0.4 2.0 3-oxoacyl-(acyl-carrier-protein) synthase III compare
Echvi_4517 +0.4 2.4 Periplasmic component of the Tol biopolymer transport system compare
Echvi_3313 +0.4 1.1 hypothetical protein compare
Echvi_2421 +0.4 1.9 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Echvi_3746 +0.4 1.7 hypothetical protein compare
Echvi_4589 +0.4 1.2 MoxR-like ATPases compare
Echvi_3075 +0.4 0.7 hypothetical protein compare
Echvi_4405 +0.4 1.4 hypothetical protein compare
Echvi_1578 +0.4 1.8 hypothetical protein compare
Echvi_4545 +0.4 1.4 hypothetical protein compare
Echvi_2933 +0.4 1.9 hypothetical protein compare
Echvi_2447 +0.4 1.7 competence/damage-inducible protein CinA C-terminal domain compare
Echvi_0613 +0.4 1.2 hypothetical protein compare
Echvi_0368 +0.4 1.1 hypothetical protein compare
Echvi_1929 +0.4 1.2 hypothetical protein compare
Echvi_3223 +0.4 0.7 Mn-dependent transcriptional regulator compare
Echvi_2606 +0.4 0.5 hypothetical protein compare
Echvi_2714 +0.4 1.8 hypothetical protein compare
Echvi_3888 +0.4 1.4 Uncharacterized conserved protein compare
Echvi_3590 +0.4 1.7 Phage baseplate assembly protein W compare
Echvi_2469 +0.4 2.3 hypothetical protein compare
Echvi_4235 +0.4 1.7 Glycosyltransferase compare
Echvi_1879 +0.4 2.0 L-arabinose isomerase (EC 5.3.1.4) (from data) compare
Echvi_4209 +0.4 1.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Echvi_1813 +0.4 0.5 Ribonuclease HI compare
Echvi_4549 +0.4 0.6 Histidine kinase./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Echvi_3564 +0.4 0.9 Uncharacterized enzyme of thiazole biosynthesis compare
Echvi_4491 +0.3 1.3 hypothetical protein compare
Echvi_4005 +0.3 1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Echvi_3255 +0.3 1.8 Predicted periplasmic protein compare
Echvi_2244 +0.3 0.9 hypothetical protein compare
Echvi_1648 +0.3 0.7 hypothetical protein compare
Echvi_3569 +0.3 2.2 Uncharacterized proteins of the AP superfamily compare
Echvi_3045 +0.3 1.4 hypothetical protein compare
Echvi_1438 +0.3 1.7 hypothetical protein compare
Echvi_3050 +0.3 1.2 hypothetical protein compare
Echvi_4229 +0.3 1.5 Uncharacterized conserved protein compare
Echvi_0641 +0.3 0.4 Transposase and inactivated derivatives compare
Echvi_1220 +0.3 1.4 Tetratricopeptide repeat. compare
Echvi_0134 +0.3 1.1 hypothetical protein compare
Echvi_1861 +0.3 2.2 Predicted aminopeptidases compare
Echvi_1091 +0.3 1.9 Predicted divalent heavy-metal cations transporter compare
Echvi_4320 +0.3 1.7 hypothetical protein compare
Echvi_0303 +0.3 1.4 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Echvi_1493 +0.3 0.9 hypothetical protein compare
Echvi_2930 +0.3 1.4 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) compare
Echvi_3470 +0.3 1.8 DNA-3-methyladenine glycosylase (3mg) compare
Echvi_2708 +0.3 1.8 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Echvi_3933 +0.3 1.9 Arylsulfatase A and related enzymes compare
Echvi_1283 +0.3 1.0 Predicted periplasmic lipoprotein (DUF2291). compare
Echvi_2991 +0.3 1.6 Tryptophan 2,3-dioxygenase (vermilion) compare
Echvi_2625 +0.3 1.4 hypothetical protein compare
Echvi_2092 +0.3 1.5 Zn-dependent dipeptidase, microsomal dipeptidase homolog compare
Echvi_0086 +0.3 1.9 Glycosyltransferases, probably involved in cell wall biogenesis compare
Echvi_2539 +0.3 1.6 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Echvi_3504 +0.3 2.3 Redoxin. compare
Echvi_3204 +0.3 1.1 Protein of unknown function (DUF2911). compare
Echvi_3387 +0.3 1.5 hypothetical protein compare
Echvi_3301 +0.3 1.2 hypothetical protein compare
Echvi_2308 +0.3 1.7 hypothetical protein compare
Echvi_2246 +0.3 0.5 hypothetical protein compare
Echvi_3361 +0.3 1.7 Predicted esterase of the alpha-beta hydrolase superfamily compare
Echvi_0639 +0.3 1.5 hypothetical protein compare
Echvi_1769 +0.3 1.4 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) compare
Echvi_3408 +0.3 1.9 Nickel uptake substrate-specific transmembrane region. compare
Echvi_3506 +0.3 2.0 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare


Specific Phenotypes

None in this experiment

For Echinicola vietnamensis KMM 6221, DSM 17526 in stress experiments

For stress Sodium Chlorite across organisms