Experiment set1IT071 for Agrobacterium fabrum C58

Compare to:

D-Mannose carbon source

200 most important genes:

  gene name fitness t score description  
Atu1750 -9.1 -5.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu0401 -8.8 -6.1 fructokinase compare
Atu1687 -8.2 -8.0 anthranilate phosphoribosyltransferase compare
Atu1845 -8.2 -5.6 phosphoribosylformylglycinamidine synthase I compare
Atu0099 -8.1 -5.6 prephenate dehydratase compare
Atu2264 -7.9 -7.7 2-isopropylmalate synthase compare
Atu2289 -7.7 -14.0 anthranilate synthase component I and II compare
Atu2709 -7.6 -11.7 3-isopropylmalate dehydratase, large subunit compare
Atu2791 -7.6 -7.4 3-isopropylmalate dehydrogenase compare
Atu3754 -7.5 -7.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0679 -7.4 -5.1 ATP phosphoribosyltransferase compare
Atu3482 -7.4 -8.8 pantoate--beta-alanine ligase compare
Atu2040 -7.3 -5.0 phosphoserine phosphatase compare
Atu1205 -7.1 -12.7 threonine dehydratase compare
Atu3885 -7.0 -6.8 inositol monophosphatase compare
Atu2036 -6.8 -13.8 acetolactate synthase III, large subunit compare
Atu0432 -6.8 -9.3 O-succinylhomoserine sulfhydrylase compare
Atu0486 -6.7 -6.6 dihydroorotate dehydrogenase compare
Atu0537 -6.7 -4.6 histidinol dehydrogenase compare
Atu2156 -6.7 -9.2 hypothetical protein conserved
Atu0678 -6.7 -4.6 histidyl-tRNA synthetase compare
Atu1850 -6.6 -5.7 phosphoribosylformylglycinamidine synthetase II compare
Atu3755 -6.6 -4.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3707 -6.5 -4.5 phosphoserine aminotransferase compare
Atu1308 -6.5 -6.4 aspartate carbamoyl transferase catalytic subunit compare
Atu2718 -6.5 -8.9 homoserine O-succinyltransferase compare
Atu2726 -6.5 -22.2 pyruvate carboxylase compare
Atu1075 -6.4 -7.7 amidophosphoribosyltransferase compare
Atu1588 -6.4 -9.8 homoserine dehydrogenase compare
Atu1141 -6.1 -8.4 Phosphoribosylglycinamide synthetase compare
Atu0298 -6.1 -6.0 orotidine 5 compare
Atu3706 -6.0 -10.1 D-3-phosphoglycerate dehydrogenase compare
Atu0422 -6.0 -3.7 ABC transporter, membrane spanning protein compare
Atu1140 -6.0 -4.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0017 -5.9 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0038 -5.8 -6.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1307 -5.8 -6.9 dihydroorotase compare
Atu3483 -5.8 -8.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0400 -5.6 -5.3 orotate phosphoribosyltransferase compare
Atu0043 -5.6 -3.9 imidazoleglycerol-phosphate dehydratase compare
Atu0647 -5.5 -5.4 phosphoribosylamine--glycine ligase compare
Atu0399 -5.4 -5.3 dihydroorotase compare
Atu0039 -5.4 -3.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu1464 -5.3 -8.9 glycine cleavage system T protein, aminomethyltransferase compare
Atu3469 -5.2 -3.6 phosphoglyceromutase compare
Atu2790 -5.1 -2.5 3-isopropylmalate dehydratase, small subunit compare
Atu1030 -5.1 -3.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1688 -5.0 -6.9 indole-3-glycerol-phosphate synthase compare
Atu1844 -4.9 -4.4 Phosphoribosylformylglycinamidine synthetase compare
Atu2015 -4.8 -14.9 aminotransferase compare
Atu3731 -4.8 -11.9 5-formyltetrahydrofolate cyclo-ligase compare
Atu1359 -4.8 -1.7 dnaK deletion suppressor protein compare
Atu0041 -4.7 -3.3 glutamine amidotransferase compare
Atu0641 -4.5 -4.0 hypothetical protein compare
Atu0421 -4.5 -2.3 ABC transporter, membrane spanning protein compare
Atu1686 -4.5 -18.9 peptidyl-prolyl cis-trans isomerse D compare
Atu2650 -4.4 -16.1 glycerol-3-phosphate dehydrogenase compare
Atu3739 -4.3 -3.3 phosphoglycerate kinase compare
Atu2747 -4.3 -16.0 hypothetical protein compare
Atu0030 -4.3 -2.2 phosphocarrier protein HPr compare
Atu3783 -4.2 -21.3 glutamate synthase subunit beta compare
Atu1462 -4.1 -14.5 glycine cleavage system protein P2 compare
Atu1021 -4.1 -3.8 outer membrane protein compare
Atu2548 -4.1 -18.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1589 -3.9 -7.5 aminotransferase, class I compare
Atu0602 -3.8 -13.8 glutamine synthetase compare
Atu0040 -3.7 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3784 -3.7 -23.1 glutamate synthase large subunit compare
Atu0598 -3.6 -10.5 phosphogluconate dehydratase compare
Atu1463 -3.5 -11.1 glycine cleavage system component H compare
Atu0601 -3.2 -12.1 oxidoreductase compare
Atu0999 -2.8 -8.3 magnesium transport protein compare
Atu0659 -2.8 -6.3 NTP pyrophosphohydrolase, MutT family compare
Atu4096 -2.8 -10.0 nicotinate-nucleotide pyrophosphorylase compare
Atu4173 -2.7 -4.0 phosphoenolpyruvate-protein phosphotransferase compare
Atu2155 -2.5 -18.0 methionine synthase compare
Atu3997 -2.5 -13.9 biotin synthetase compare
Atu0912 -2.4 -1.7 Na+/H+ antiporter compare
Atu1446 -2.4 -3.0 two component response regulator compare
Atu2125 -2.4 -2.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu4098 -2.4 -11.7 quinolinate synthetase compare
Atu3290 -2.3 -9.6 phosphomethylpyrimidine kinase compare
Atu3999 -2.3 -4.3 dithiobiotin synthetase compare
Atu6165 -2.3 -1.1 hypothetical protein compare
Atu1456 -2.2 -10.6 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1620 -2.2 -11.6 triosephosphate isomerase compare
Atu3998 -2.2 -12.8 8-amino-7-oxononanoate synthase compare
Atu1454 -2.2 -6.8 siroheme synthase compare
Atu2569 -2.1 -12.5 thiamine biosynthesis protein compare
Atu2205 -2.1 -5.4 transcriptional regulator, MarR family compare
Atu1604 -2.0 -12.4 poly-beta-hydroxybutyrate synthase compare
Atu3288 -2.0 -9.9 hydroxyethylthiazole kinase compare
Atu3289 -2.0 -3.5 thiamine-phosphate pyrophosphorylase compare
Atu4097 -2.0 -8.8 L-aspartate oxidase compare
Atu4000 -1.9 -13.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu3712 -1.9 -2.4 hypothetical protein compare
Atu0368 -1.8 -5.1 tRNA pseudouridine synthase I compare
Atu4001 -1.8 -8.5 3-oxoacyl-ACP synthase compare
Atu0086 -1.8 -1.4 ribosome-binding factor A compare
Atu1748 -1.7 -9.3 NIFU-like protein compare
Atu0434 -1.7 -3.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2127 -1.7 -9.0 L-carnitine dehydratase compare
Atu0332 -1.7 -8.6 RNA polymerase sigma-54 factor compare
Atu2684 -1.6 -1.8 hypothetical protein compare
Atu8115 -1.5 -3.7 Hypothetical Protein compare
Atu2682 -1.5 -2.9 hypothetical protein compare
Atu2209 -1.5 -3.6 pyrroline-5-carboxylate reductase compare
Atu3730 -1.5 -2.2 hypothetical protein compare
Atu2831 -1.5 -5.0 glucose inhibited division protein A compare
Atu6098 -1.5 -0.7 transcriptional regulator, HTH family compare
Atu0388 -1.5 -8.7 two component sensor kinase compare
Atu6189 -1.5 -0.8 protein secretion chaperone compare
Atu0977 -1.4 -3.3 serine protease DO-like protease compare
Atu8087 -1.4 -1.5 putative peptidoglycan binding protein compare
Atu0533 -1.4 -2.6 putative inhibitor of septum formation compare
Atu0062 -1.4 -5.4 transcriptional regulator, ROK family compare
Atu1455 -1.3 -3.2 hypothetical protein compare
Atu0029 -1.3 -4.4 S-adenosylhomocysteine hydrolase compare
Atu1685 -1.3 -1.3 hypothetical protein compare
Atu1810 -1.3 -1.4 hypothetical protein compare
Atu0189 -1.3 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu2555 -1.3 -3.8 L-lysine 2,3-aminomutase compare
Atu0106 -1.2 -2.7 cold shock protein compare
Atu0703 -1.2 -2.9 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu2746 -1.2 -4.6 hypothetical protein compare
Atu5501 -1.2 -2.0 hypothetical protein compare
Atu4346 -1.2 -4.2 hypothetical protein compare
Atu1028 -1.2 -2.4 hypothetical protein compare
Atu2045 -1.2 -6.2 HFLK protein compare
Atu0769 -1.2 -1.4 protoheme IX farnesyltransferase compare
Atu8138 -1.1 -1.5 hypothetical protein compare
Atu2832 -1.1 -2.9 tRNA modification GTPase compare
Atu4635 -1.1 -6.2 hypothetical protein compare
Atu0876 -1.1 -2.1 superoxide dismutase compare
Atu2044 -1.1 -4.0 HFLC protein compare
Atu0981 -1.1 -6.9 glutamate-ammonia-ligase adenylyltransferase compare
Atu5125 -1.1 -3.5 GntR family transcriptional regulator compare
Atu4711 -1.1 -4.9 two component sensor kinase compare
Atu3299 -1.1 -2.9 hypothetical protein compare
Atu0188 -1.1 -3.1 ABC transporter, membrane spanning protein (peptide) compare
Atu0107 -1.0 -2.2 hypothetical protein compare
Atu1457 -1.0 -1.9 hypothetical protein compare
Atu1851 -1.0 -2.6 BolA/YrbA family protein compare
Atu0510 -1.0 -6.3 pH adaption potassium efflux system protein compare
Atu2793 -1.0 -3.8 cobyrinic acid a,c-diamide synthase compare
Atu8131 -1.0 -7.1 pH adaption potassium efflux system protein compare
Atu3468 -1.0 -1.0 hypothetical protein compare
Atu3162 -1.0 -4.5 LacI family transcriptional regulator compare
Atu2376 -1.0 -0.7 hypothetical protein compare
Atu3910 -1.0 -2.9 LamB/YcsF family protein compare
Atu2346 -1.0 -6.6 ABC transporter, membrane spanning protein (sugar) compare
Atu3486 -1.0 -1.4 DeoR family transcriptional regulator compare
Atu2606 -0.9 -3.1 transcriptional regulator, GntR family compare
Atu8018 -0.9 -0.9 hypothetical protein compare
Atu2020 -0.9 -2.0 transcriptional regulator, TetR family compare
Atu4407 -0.9 -2.7 periplasmic nitrate reductase, NapD protein compare
Atu2239 -0.9 -3.2 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1770 -0.9 -5.1 glutamine synthetase compare
Atu1891 -0.9 -2.1 cobalamin biosynthesis protein compare
Atu0190 -0.9 -4.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2770 -0.9 -4.7 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu4317 -0.9 -1.3 TetR family transcriptional regulator compare
Atu3115 -0.9 -3.5 TetR family transcriptional regulator compare
Atu0658 -0.9 -4.5 phosphate permease compare
Atu6114 -0.9 -1.4 hypothetical protein compare
Atu1470 -0.9 -0.7 Camphor resistance protein compare
Atu5186 -0.9 -1.3 hypothetical protein compare
Atu0065 -0.9 -5.0 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu2634 -0.9 -1.8 hypothetical protein compare
Atu0507 -0.8 -2.8 potassium efflux system protein compare
Atu5145 -0.8 -1.9 acetyltransferase compare
Atu2347 -0.8 -4.2 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu4161 -0.8 -1.7 hypothetical protein compare
Atu3427 -0.8 -2.2 hypothetical protein compare
Atu2237 -0.8 -2.5 cytochrome c1 compare
Atu0064 -0.8 -4.6 ABC transporter, membrane spanning protein (sugar) compare
Atu2270 -0.8 -1.5 ATP-dependent Clp protease, proteolytic subunit compare
Atu0792 -0.8 -5.1 hypothetical protein compare
Atu2800 -0.8 -3.1 precorrin-3B C17-methyltransferase compare
Atu4446 -0.8 -3.6 hypothetical protein compare
Atu6112 -0.8 -1.7 conserved hypothetical protein compare
Atu8012 -0.8 -1.4 hypothetical protein compare
Atu0638 -0.8 -1.5 hypothetical protein compare
Atu0723 -0.8 -1.1 FAD dependent oxidoreductase compare
Atu2662 -0.8 -1.2 acetyltransferase compare
Atu1677 -0.8 -2.9 queuine tRNA-ribosyltransferase compare
Atu2532 -0.8 -3.3 transcriptional regulator, MarR family compare
Atu0770 -0.8 -2.8 cytochrome C oxidase assembly protein compare
Atu2809 -0.8 -3.7 cobalamin biosynthesis protein compare
Atu1439 -0.7 -2.0 hypothetical protein compare
Atu0369 -0.7 -1.7 hypothetical protein compare
Atu4674 -0.7 -5.1 GntR family transcriptional regulator compare
Atu2776 -0.7 -4.7 hypothetical protein compare
Atu8177 -0.7 -1.7 hypothetical protein compare
Atu4685 -0.7 -5.2 LacI family transcriptional regulator compare
Atu2207 -0.7 -2.3 two component sensor kinase compare
Atu3780 -0.7 -3.5 hypothetical protein compare
Atu2804 -0.7 -5.0 cobaltochelatase subunit compare
Atu3336 -0.7 -2.2 hypothetical protein compare
Atu2348 -0.7 -4.6 sugar binding protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Mannose in Agrobacterium fabrum C58

For carbon source D-Mannose across organisms