Experiment set1IT070 for Rhizobium sp. OAE497

Compare to:

L-Tryptophan carbon source

200 most important genes:

  gene name fitness t score description  
ABIE40_RS00245 -6.7 -4.6 prephenate dehydratase compare
ABIE40_RS19355 -6.6 -4.5 thioredoxin compare
ABIE40_RS11950 -6.4 -4.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE40_RS02340 -6.0 -10.8 O-succinylhomoserine sulfhydrylase compare
ABIE40_RS17525 -5.9 -3.0 lipoprotein compare
ABIE40_RS18380 -5.8 -11.2 3-isopropylmalate dehydratase large subunit compare
ABIE40_RS14850 -5.7 -7.9 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE40_RS09095 -5.6 -3.9 PAS domain-containing sensor histidine kinase compare
ABIE40_RS12115 -5.6 -2.8 GntR family transcriptional regulator compare
ABIE40_RS12845 -5.6 -3.8 glycosyltransferase family 4 protein compare
ABIE40_RS06555 -5.4 -2.8 phosphoribosylglycinamide formyltransferase compare
ABIE40_RS13330 -5.4 -12.1 2-isopropylmalate synthase compare
ABIE40_RS09545 -5.3 -3.2 anthranilate phosphoribosyltransferase compare
ABIE40_RS06730 -5.3 -3.7 riboflavin synthase compare
ABIE40_RS09155 -5.3 -5.2 DUF934 domain-containing protein compare
ABIE40_RS18590 -5.3 -14.9 homoserine O-succinyltransferase compare
ABIE40_RS02590 -5.3 -15.2 FAD-dependent oxidoreductase compare
ABIE40_RS19050 -5.2 -9.6 3-isopropylmalate dehydrogenase compare
ABIE40_RS19040 -5.2 -7.1 3-isopropylmalate dehydratase small subunit compare
ABIE40_RS29160 -5.2 -2.7 hypothetical protein compare
ABIE40_RS02155 -5.2 -14.6 long-chain fatty acid--CoA ligase compare
ABIE40_RS18920 -5.2 -5.0 glutamate 5-kinase compare
ABIE40_RS02585 -5.1 -12.9 acetyl-CoA C-acetyltransferase compare
ABIE40_RS11060 -5.1 -3.5 lipid A biosynthesis lauroyl acyltransferase compare
ABIE40_RS16320 -5.1 -3.5 histidinol-phosphatase compare
ABIE40_RS24490 -5.0 -1.5 flavin reductase compare
ABIE40_RS03665 -5.0 -3.5 ATP phosphoribosyltransferase compare
ABIE40_RS02580 -5.0 -19.1 acyl-CoA dehydrogenase C-terminal domain-containing protein compare
ABIE40_RS02725 -5.0 -3.5 histidinol dehydrogenase compare
ABIE40_RS10725 -5.0 -3.4 adenosylcobinamide-GDP ribazoletransferase compare
ABIE40_RS19490 -4.9 -12.0 malate synthase G compare
ABIE40_RS02325 -4.9 -3.4 ornithine carbamoyltransferase compare
ABIE40_RS03660 -4.9 -3.4 ATP phosphoribosyltransferase regulatory subunit compare
ABIE40_RS20460 -4.9 -3.3 precorrin-3B synthase compare
ABIE40_RS02730 -4.8 -9.8 UPF0262 family protein compare
ABIE40_RS19435 -4.8 -2.5 phosphoribosyl-ATP diphosphatase compare
ABIE40_RS04320 -4.8 -17.3 pyruvate, phosphate dikinase compare
ABIE40_RS17530 -4.7 -6.5 diaminopimelate decarboxylase compare
ABIE40_RS10720 -4.7 -2.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE40_RS09725 -4.6 -3.2 phosphoribosyl-AMP cyclohydrolase compare
ABIE40_RS19460 -4.6 -3.2 imidazoleglycerol-phosphate dehydratase HisB compare
ABIE40_RS11175 -4.6 -3.2 cobyric acid synthase compare
ABIE40_RS10180 -4.5 -3.1 phosphoribosylformylglycinamidine synthase subunit PurL compare
ABIE40_RS14855 -4.5 -3.1 NAD-dependent epimerase compare
ABIE40_RS06560 -4.5 -3.1 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE40_RS13410 -4.5 -3.1 anthranilate synthase compare
ABIE40_RS02075 -4.5 -11.9 ROK family transcriptional regulator compare
ABIE40_RS19440 -4.4 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
ABIE40_RS16390 -4.4 -1.3 hypothetical protein compare
ABIE40_RS09150 -4.4 -14.1 nitrite/sulfite reductase compare
ABIE40_RS11105 -4.4 -4.3 cobyrinate a,c-diamide synthase compare
ABIE40_RS19330 -4.4 -3.1 phosphoribosylanthranilate isomerase compare
ABIE40_RS11165 -4.4 -2.6 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABIE40_RS11150 -4.4 -7.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABIE40_RS16070 -4.3 -3.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE40_RS20440 -4.3 -2.9 cobalt-precorrin-6A reductase compare
ABIE40_RS03255 -4.3 -15.6 isocitrate lyase compare
ABIE40_RS20435 -4.2 -2.9 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
ABIE40_RS00925 -4.2 -6.4 ABC transporter permease compare
ABIE40_RS11095 -4.2 -2.9 adenosylcobinamide-phosphate synthase CbiB compare
ABIE40_RS03260 -4.2 -8.9 short-chain fatty acyl-CoA regulator family protein compare
ABIE40_RS16645 -4.1 -15.3 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS19450 -4.1 -2.8 imidazole glycerol phosphate synthase subunit HisH compare
ABIE40_RS05025 -4.1 -3.9 MucR family transcriptional regulator compare
ABIE40_RS20905 -4.1 -4.5 IclR family transcriptional regulator compare
ABIE40_RS00935 -4.0 -2.7 ABC transporter substrate-binding protein compare
ABIE40_RS20455 -3.9 -2.0 precorrin-8X methylmutase compare
ABIE40_RS10345 -3.9 -6.9 RNA polymerase-binding protein DksA compare
ABIE40_RS09360 -3.9 -6.5 excinuclease ABC subunit UvrA compare
ABIE40_RS20430 -3.9 -2.7 precorrin-4 C(11)-methyltransferase compare
ABIE40_RS08005 -3.8 -2.6 dihydroxy-acid dehydratase compare
ABIE40_RS00930 -3.8 -6.4 ABC transporter permease compare
ABIE40_RS06270 -3.8 -8.4 amidophosphoribosyltransferase compare
ABIE40_RS06930 -3.8 -5.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE40_RS30285 -3.8 -1.1 co-chaperone GroES compare
ABIE40_RS14985 -3.8 -2.2 glycosyltransferase compare
ABIE40_RS03250 -3.8 -1.6 hypothetical protein compare
ABIE40_RS11495 -3.7 -6.2 acetolactate synthase 3 large subunit compare
ABIE40_RS20465 -3.7 -2.6 precorrin-6A synthase (deacetylating) compare
ABIE40_RS12135 -3.7 -2.6 methionine synthase compare
ABIE40_RS03405 -3.7 -2.6 anti-sigma factor compare
ABIE40_RS08635 -3.7 -13.7 class I poly(R)-hydroxyalkanoic acid synthase compare
ABIE40_RS09660 -3.7 -12.2 AI-2E family transporter compare
ABIE40_RS00630 -3.7 -10.2 ABC transporter ATP-binding protein compare
ABIE40_RS10430 -3.6 -11.9 MlaE family lipid ABC transporter permease subunit compare
ABIE40_RS19445 -3.6 -2.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE40_RS17645 -3.6 -2.5 cobaltochelatase subunit CobT compare
ABIE40_RS11155 -3.6 -7.3 cobaltochelatase subunit CobN compare
ABIE40_RS19415 -3.6 -11.4 phosphoenolpyruvate carboxykinase compare
ABIE40_RS17595 -3.6 -5.4 histidinol-phosphate transaminase compare
ABIE40_RS02320 -3.5 -5.4 aspartate aminotransferase family protein compare
ABIE40_RS08935 -3.5 -4.3 RIP metalloprotease RseP compare
ABIE40_RS08140 -3.5 -15.4 vitamin B12-dependent ribonucleotide reductase compare
ABIE40_RS19130 -3.5 -4.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE40_RS24380 -3.4 -9.2 FGGY-family carbohydrate kinase compare
ABIE40_RS09140 -3.4 -8.9 siroheme synthase CysG compare
ABIE40_RS19260 -3.4 -2.3 DNA polymerase III subunit epsilon compare
ABIE40_RS05430 -3.4 -2.3 phosphoribosylamine--glycine ligase compare
ABIE40_RS15920 -3.4 -1.0 50S ribosomal protein L31 compare
ABIE40_RS17650 -3.3 -5.5 cobaltochelatase subunit CobS compare
ABIE40_RS18925 -3.3 -6.7 glutamate-5-semialdehyde dehydrogenase compare
ABIE40_RS18720 -3.3 -2.2 polyprenyl synthetase family protein compare
ABIE40_RS18300 -3.3 -8.4 DsbE family thiol:disulfide interchange protein compare
ABIE40_RS17590 -3.3 -2.2 prephenate/arogenate dehydrogenase family protein compare
ABIE40_RS16170 -3.3 -3.1 DUF882 domain-containing protein compare
ABIE40_RS12855 -3.2 -7.5 glycosyltransferase family 2 protein compare
ABIE40_RS00620 -3.2 -8.7 microcin C ABC transporter permease YejB compare
ABIE40_RS00725 -3.2 -4.4 DNA cytosine methyltransferase compare
ABIE40_RS00490 -3.2 -10.4 DNA polymerase I compare
ABIE40_RS19700 -3.2 -2.2 MBL fold metallo-hydrolase compare
ABIE40_RS24355 -3.2 -4.9 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS00580 -3.1 -3.0 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE40_RS10420 -3.1 -7.4 MCE family protein compare
ABIE40_RS16655 -3.1 -4.4 creatininase family protein compare
ABIE40_RS20445 -3.1 -1.3 precorrin-3B C(17)-methyltransferase compare
ABIE40_RS17020 -3.0 -9.9 sugar-binding transcriptional regulator compare
ABIE40_RS10425 -3.0 -6.1 ABC transporter ATP-binding protein compare
ABIE40_RS21985 -2.9 -6.2 MarR family transcriptional regulator compare
ABIE40_RS09170 -2.9 -5.5 cytochrome c biogenesis CcdA family protein compare
ABIE40_RS30895 -2.9 -2.7 cytochrome o ubiquinol oxidase subunit IV compare
ABIE40_RS27295 -2.9 -2.5 hypothetical protein compare
ABIE40_RS06725 -2.9 -5.5 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD compare
ABIE40_RS01970 -2.9 -2.5 acetylglutamate kinase compare
ABIE40_RS03855 -2.8 -9.8 acyl-CoA dehydrogenase compare
ABIE40_RS07335 -2.8 -1.6 50S ribosomal protein L33 compare
ABIE40_RS14990 -2.8 -8.5 glycosyltransferase family 2 protein compare
ABIE40_RS19395 -2.7 -3.2 PTS sugar transporter subunit IIA compare
ABIE40_RS08645 -2.7 -5.1 LL-diaminopimelate aminotransferase compare
ABIE40_RS04350 -2.7 -12.7 MBL fold metallo-hydrolase compare
ABIE40_RS11020 -2.7 -8.9 substrate-binding domain-containing protein compare
ABIE40_RS04475 -2.6 -8.9 phosphoadenylyl-sulfate reductase compare
ABIE40_RS10155 -2.6 -1.8 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE40_RS10035 -2.6 -4.3 DUF3971 domain-containing protein compare
ABIE40_RS13130 -2.6 -8.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE40_RS20450 -2.6 -2.5 precorrin-2 C(20)-methyltransferase compare
ABIE40_RS00625 -2.6 -10.2 ABC transporter permease compare
ABIE40_RS00960 -2.6 -4.3 formyltetrahydrofolate deformylase compare
ABIE40_RS04470 -2.5 -11.0 sulfate adenylyltransferase subunit CysD compare
ABIE40_RS04070 -2.5 -5.0 heme o synthase compare
ABIE40_RS10390 -2.5 -2.7 2Fe-2S iron-sulfur cluster-binding protein compare
ABIE40_RS12925 -2.5 -10.1 pyridoxal phosphate-dependent aminotransferase compare
ABIE40_RS05680 -2.5 -6.2 cytochrome c maturation protein CcmE compare
ABIE40_RS23250 -2.5 -8.1 hypothetical protein compare
ABIE40_RS00450 -2.4 -5.8 molecular chaperone DnaJ compare
ABIE40_RS18615 -2.4 -2.5 MarR family transcriptional regulator compare
ABIE40_RS19480 -2.4 -3.3 DUF1402 family protein compare
ABIE40_RS06050 -2.4 -5.0 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE40_RS18880 -2.4 -9.6 UDP-glucose 4-epimerase GalE compare
ABIE40_RS10415 -2.4 -6.4 ABC-type transport auxiliary lipoprotein family protein compare
ABIE40_RS09320 -2.3 -10.5 extracellular solute-binding protein compare
ABIE40_RS09090 -2.3 -8.3 nitrogen regulation protein NR(I) compare
ABIE40_RS11960 -2.3 -1.6 energy-dependent translational throttle protein EttA compare
ABIE40_RS01055 -2.3 -5.7 translation elongation factor 4 compare
ABIE40_RS01415 -2.3 -1.7 cysteine synthase A compare
ABIE40_RS10200 -2.2 -1.9 Grx4 family monothiol glutaredoxin compare
ABIE40_RS18055 -2.2 -3.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABIE40_RS09950 -2.2 -11.8 aminomethyl-transferring glycine dehydrogenase compare
ABIE40_RS05660 -2.2 -2.6 response regulator transcription factor compare
ABIE40_RS14955 -2.2 -6.7 sugar transferase compare
ABIE40_RS24130 -2.2 -1.6 ABC transporter permease compare
ABIE40_RS28815 -2.2 -5.1 GNAT family N-acetyltransferase compare
ABIE40_RS24310 -2.1 -6.1 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS18290 -2.1 -8.6 heme ABC transporter permease compare
ABIE40_RS11490 -2.1 -5.2 acetolactate synthase small subunit compare
ABIE40_RS09940 -2.1 -7.3 glycine cleavage system aminomethyltransferase GcvT compare
ABIE40_RS18690 -2.1 -7.1 acetyl-CoA C-acetyltransferase compare
ABIE40_RS02305 -2.0 -4.7 phosphate signaling complex protein PhoU compare
ABIE40_RS18685 -2.0 -3.9 beta-ketoacyl-ACP reductase compare
ABIE40_RS29835 -2.0 -1.1 transposase compare
ABIE40_RS12985 -2.0 -6.0 ATP-binding protein compare
ABIE40_RS05685 -2.0 -7.4 heme lyase CcmF/NrfE family subunit compare
ABIE40_RS04465 -2.0 -8.7 sulfate adenylyltransferase subunit CysN compare
ABIE40_RS05690 -2.0 -2.7 cytochrome c-type biogenesis protein compare
ABIE40_RS04700 -2.0 -1.8 helix-turn-helix domain-containing protein compare
ABIE40_RS09720 -2.0 -3.9 GTP cyclohydrolase I FolE compare
ABIE40_RS12360 -2.0 -7.8 DUF5131 family protein compare
ABIE40_RS09945 -2.0 -5.6 glycine cleavage system protein GcvH compare
ABIE40_RS22665 -1.9 -2.6 class 1b ribonucleoside-diphosphate reductase subunit beta compare
ABIE40_RS13120 -1.9 -5.2 cytochrome c1 compare
ABIE40_RS16570 -1.9 -2.4 tetratricopeptide repeat protein compare
ABIE40_RS30495 -1.9 -1.0 LuxR C-terminal-related transcriptional regulator compare
ABIE40_RS16060 -1.9 -2.4 DUF465 domain-containing protein compare
ABIE40_RS20370 -1.9 -1.9 type II toxin-antitoxin system Phd/YefM family antitoxin compare
ABIE40_RS05670 -1.9 -4.2 membrane protein compare
ABIE40_RS11935 -1.9 -1.9 class I SAM-dependent methyltransferase compare
ABIE40_RS19385 -1.9 -5.1 adenosylhomocysteinase compare
ABIE40_RS13085 -1.8 -3.0 GNAT family N-acetyltransferase compare
ABIE40_RS19365 -1.8 -2.5 double-strand break repair protein AddB compare
ABIE40_RS18640 -1.8 -6.9 M48 family metalloprotease compare
ABIE40_RS06645 -1.8 -2.0 hypothetical protein compare
ABIE40_RS04060 -1.8 -7.7 cytochrome c oxidase subunit II compare
ABIE40_RS05870 -1.8 -6.0 glycosyltransferase family 2 protein compare
ABIE40_RS04065 -1.7 -7.5 cytochrome c oxidase subunit I compare
ABIE40_RS18735 -1.7 -3.3 TetR/AcrR family transcriptional regulator compare
ABIE40_RS10140 -1.7 -3.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS18775 -1.7 -10.7 pyruvate carboxylase compare
ABIE40_RS05625 -1.7 -1.0 phage tail tape measure protein compare
ABIE40_RS18280 -1.7 -1.8 heme ABC exporter ATP-binding protein CcmA compare
ABIE40_RS09540 -1.7 -3.1 peptidylprolyl isomerase compare
ABIE40_RS06915 -1.7 -8.3 COX15/CtaA family protein compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source L-Tryptophan in Rhizobium sp. OAE497

For carbon source L-Tryptophan across organisms