Experiment set1IT070 for Serratia liquefaciens MT49

Compare to:

Cadmium acetate dihydrate 20 uM, anaerobic

200 most important genes:

  gene name fitness t score description  
IAI46_13260 -5.2 -3.6 FNR family transcription factor compare
IAI46_24750 -3.0 -2.1 glycosyltransferase compare
IAI46_24755 -3.0 -8.3 O-antigen ligase family protein compare
IAI46_24770 -2.7 -4.1 polysaccharide deacetylase family protein compare
IAI46_23690 -2.7 -1.8 adenine-specific DNA-methyltransferase compare
IAI46_24785 -2.7 -1.8 glycosyltransferase compare
IAI46_00855 -2.7 -15.6 zinc/cadmium/mercury/lead-transporting ATPase compare
IAI46_24760 -2.6 -5.0 glycosyltransferase compare
IAI46_24945 -2.6 -1.8 ribosome-dependent GTPase TypA compare
IAI46_17750 -2.6 -4.8 acetate kinase compare
IAI46_12890 -2.5 -2.8 SidA/IucD/PvdA family monooxygenase compare
IAI46_18460 -2.4 -5.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI46_25195 -2.3 -2.2 phosphate signaling complex protein PhoU compare
IAI46_23090 -2.3 -12.7 glucose-6-phosphate isomerase compare
IAI46_10660 -2.2 -1.9 TetR/AcrR family transcriptional regulator compare
IAI46_09235 -2.1 -4.0 hypothetical protein compare
IAI46_06155 -2.1 -1.8 DUF3861 domain-containing protein compare
IAI46_24985 -2.1 -8.0 DNA polymerase I compare
IAI46_25250 -2.1 -4.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI46_20670 -2.0 -2.3 Hpt domain-containing protein compare
IAI46_12945 -2.0 -2.9 sugar ABC transporter permease compare
IAI46_15295 -1.9 -2.2 hypothetical protein compare
IAI46_00735 -1.9 -8.2 DNA helicase II compare
IAI46_11420 -1.8 -3.2 RidA family protein compare
IAI46_23295 -1.7 -5.4 Zn(2+)-responsive transcriptional regulator compare
IAI46_07825 -1.7 -3.5 molybdopterin-synthase adenylyltransferase MoeB compare
IAI46_16460 -1.7 -1.8 glycogen synthesis protein compare
IAI46_05350 -1.7 -1.8 ABC transporter ATP-binding protein compare
IAI46_08605 -1.7 -5.7 pyruvate formate lyase 1-activating protein compare
IAI46_15290 -1.6 -2.0 hypothetical protein compare
IAI46_08610 -1.6 -9.4 formate C-acetyltransferase compare
IAI46_12270 -1.5 -2.4 ABC transporter substrate-binding protein compare
IAI46_23240 -1.5 -4.5 shikimate dehydrogenase compare
IAI46_02265 -1.5 -1.3 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI46_08130 -1.5 -2.2 ABC transporter ATP-binding protein compare
IAI46_15480 -1.5 -2.9 fimbrial protein compare
IAI46_14510 -1.5 -2.8 YcgL domain-containing protein compare
IAI46_02130 -1.5 -6.3 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
IAI46_17810 -1.5 -7.6 amidophosphoribosyltransferase compare
IAI46_18885 -1.4 -5.2 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI46_09995 -1.4 -2.6 DNA polymerase III subunit theta compare
IAI46_04935 -1.4 -1.5 exodeoxyribonuclease VII small subunit compare
IAI46_06565 -1.4 -2.6 GTP 3',8-cyclase MoaA compare
IAI46_02135 -1.4 -8.9 anaerobic ribonucleoside-triphosphate reductase compare
IAI46_00640 -1.4 -3.5 ECA oligosaccharide polymerase compare
IAI46_20730 -1.4 -2.2 site-specific tyrosine recombinase XerD compare
IAI46_11195 -1.3 -1.4 tRNA-Val compare
IAI46_16270 -1.3 -2.7 hypothetical protein compare
IAI46_24645 -1.3 -5.2 6-phosphofructokinase compare
IAI46_25110 -1.3 -4.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI46_10255 -1.3 -2.0 stress-induced protein YchH compare
IAI46_09100 -1.3 -1.7 enoyl-CoA hydratase/isomerase family protein compare
IAI46_06585 -1.3 -3.3 molybdopterin synthase catalytic subunit MoaE compare
IAI46_03840 -1.3 -3.1 recombinase RecA compare
IAI46_16475 -1.3 -1.9 cupin domain-containing protein compare
IAI46_12110 -1.3 -2.4 beta-lactamase family protein compare
IAI46_09830 -1.3 -4.8 PTS glucose transporter subunit IIBC compare
IAI46_17755 -1.3 -2.9 phosphate acetyltransferase compare
IAI46_09130 -1.2 -2.5 universal stress protein compare
IAI46_05885 -1.2 -3.7 fluoride efflux transporter CrcB compare
IAI46_12210 -1.2 -1.9 TIGR00645 family protein compare
IAI46_00610 -1.2 -1.5 dTDP-glucose 4,6-dehydratase compare
IAI46_06575 -1.2 -2.0 cyclic pyranopterin monophosphate synthase MoaC compare
IAI46_14610 -1.1 -1.8 zinc ABC transporter ATP-binding protein ZnuC compare
IAI46_09505 -1.1 -1.4 hypothetical protein compare
IAI46_05035 -1.1 -1.2 helix-hairpin-helix domain-containing protein compare
IAI46_20075 -1.1 -2.8 methionine ABC transporter ATP-binding protein MetN compare
IAI46_14880 -1.1 -1.5 fosfomycin resistance glutathione transferase compare
IAI46_02110 -1.1 -3.6 phosphonate metabolism transcriptional regulator PhnF compare
IAI46_13705 -1.1 -1.9 lysozyme compare
IAI46_11080 -1.1 -2.0 ABC transporter substrate-binding protein compare
IAI46_08640 -1.1 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
IAI46_11340 -1.1 -2.3 transcriptional regulator SlyA compare
IAI46_01200 -1.1 -1.5 tRNA-Thr compare
IAI46_14755 -1.0 -2.7 ASCH domain-containing protein compare
IAI46_14540 -1.0 -2.2 Slp family lipoprotein compare
IAI46_24150 -1.0 -1.6 inorganic phosphate transporter PitA compare
IAI46_16945 -1.0 -2.0 DNA oxidative demethylase AlkB compare
IAI46_02940 -1.0 -4.7 phosphoserine phosphatase compare
IAI46_10510 -1.0 -2.9 Qnr family pentapeptide repeat protein compare
IAI46_13310 -1.0 -2.1 carboxypeptidase M32 compare
IAI46_15510 -1.0 -2.0 respiratory nitrate reductase subunit gamma compare
IAI46_10145 -1.0 -1.3 hypothetical protein compare
IAI46_12160 -1.0 -2.9 hypothetical protein compare
IAI46_13995 -1.0 -1.7 23S rRNA pseudouridine(2605) synthase RluB compare
IAI46_07090 -1.0 -2.6 acetyltransferase compare
IAI46_19560 -0.9 -2.7 elongation factor 4 compare
IAI46_18025 -0.9 -3.4 chorismate synthase compare
IAI46_05375 -0.9 -1.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI46_00725 -0.9 -1.6 tyrosine recombinase XerC compare
IAI46_01955 -0.9 -4.4 polyribonucleotide nucleotidyltransferase compare
IAI46_08635 -0.9 -3.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI46_10935 -0.9 -1.0 hypothetical protein compare
IAI46_06570 -0.9 -2.6 molybdenum cofactor biosynthesis protein B compare
IAI46_12485 -0.9 -2.5 carbamoyltransferase HypF compare
IAI46_14155 -0.9 -2.1 DeoR/GlpR transcriptional regulator compare
IAI46_07070 -0.9 -1.6 TetR/AcrR family transcriptional regulator compare
IAI46_25010 -0.9 -4.2 molybdenum cofactor guanylyltransferase MobA compare
IAI46_23685 -0.9 -1.2 ribulose-phosphate 3-epimerase compare
IAI46_14465 -0.9 -0.9 hypothetical protein compare
IAI46_07830 -0.9 -4.5 molybdopterin molybdotransferase MoeA compare
IAI46_01365 -0.9 -6.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI46_05370 -0.9 -2.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI46_12725 -0.9 -1.1 TetR/AcrR family transcriptional regulator compare
IAI46_11220 -0.9 -1.5 peptidase inhibitor I78 family protein compare
IAI46_20900 -0.9 -3.6 phosphoglycerate dehydrogenase compare
IAI46_09375 -0.9 -1.2 TraR/DksA family transcriptional regulator compare
IAI46_13975 -0.8 -2.0 YciN family protein compare
IAI46_15525 -0.8 -5.8 nitrate reductase subunit alpha compare
IAI46_06145 -0.8 -3.4 alpha-D-glucose phosphate-specific phosphoglucomutase compare
IAI46_13085 -0.8 -2.4 branched-chain amino acid ABC transporter permease compare
IAI46_10295 -0.8 -3.1 tetratricopeptide repeat-containing protein compare
IAI46_18340 -0.8 -1.4 Fe(3+)-siderophore ABC transporter permease compare
IAI46_08790 -0.8 -2.6 FMNH2-dependent alkanesulfonate monooxygenase compare
IAI46_01360 -0.8 -4.6 phosphoribosylamine--glycine ligase compare
IAI46_20455 -0.8 -1.2 RNA pyrophosphohydrolase compare
IAI46_06015 -0.8 -2.3 PhoH family protein compare
IAI46_17925 -0.8 -1.6 copper resistance protein compare
IAI46_12175 -0.8 -3.3 hypothetical protein compare
IAI46_12420 -0.8 -1.8 aldehyde dehydrogenase family protein compare
IAI46_19645 -0.8 -3.1 RnfH family protein compare
IAI46_17380 -0.8 -1.1 tRNA-Thr compare
IAI46_12455 -0.8 -1.1 FCD domain-containing protein compare
IAI46_03015 -0.8 -3.2 two-component system response regulator ArcA compare
IAI46_20595 -0.8 -1.2 hypothetical protein compare
IAI46_24695 -0.8 -3.1 protein-export chaperone SecB compare
IAI46_01970 -0.8 -1.4 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI46_19330 -0.8 -2.4 ISC system 2Fe-2S type ferredoxin compare
IAI46_11815 -0.8 -1.6 Asp/Glu racemase compare
IAI46_01940 -0.8 -0.9 30S ribosome-binding factor RbfA compare
IAI46_12660 -0.8 -1.1 NAD(P)H-dependent oxidoreductase compare
IAI46_12205 -0.8 -1.6 3-hydroxyacyl-ACP dehydratase FabZ compare
IAI46_03985 -0.8 -4.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI46_18670 -0.8 -1.2 ferredoxin-type protein NapF compare
IAI46_19475 -0.8 -5.5 phosphoribosylformylglycinamidine synthase compare
IAI46_14515 -0.8 -1.5 septum site-determining protein MinC compare
IAI46_07840 -0.8 -1.1 isoaspartyl peptidase/L-asparaginase compare
IAI46_14415 -0.8 -1.6 hypothetical protein compare
IAI46_24315 -0.7 -1.4 4-oxalocrotonate tautomerase family protein compare
IAI46_15675 -0.7 -1.8 gamma-glutamylcyclotransferase compare
IAI46_19600 -0.7 -2.7 ATP-dependent RNA helicase SrmB compare
IAI46_16360 -0.7 -1.7 phenylacetate-CoA oxygenase subunit PaaC compare
IAI46_24970 -0.7 -5.7 oxygen-independent coproporphyrinogen III oxidase compare
IAI46_15520 -0.7 -3.3 nitrate reductase subunit beta compare
IAI46_10910 -0.7 -3.4 GMC family oxidoreductase compare
IAI46_11705 -0.7 -1.1 DUF1161 domain-containing protein compare
IAI46_17945 -0.7 -2.1 endonuclease/exonuclease/phosphatase family protein compare
IAI46_14915 -0.7 -1.7 DUF1304 domain-containing protein compare
IAI46_11910 -0.7 -2.3 PRD domain-containing protein compare
IAI46_18955 -0.7 -2.1 molecular chaperone compare
IAI46_23700 -0.7 -2.2 3-dehydroquinate synthase compare
IAI46_08555 -0.7 -3.7 leucine-responsive transcriptional regulator Lrp compare
IAI46_09660 -0.7 -2.2 peptide MFS transporter compare
IAI46_18070 -0.7 -2.7 c-type cytochrome biogenesis protein CcmI compare
IAI46_13960 -0.7 -1.3 hypothetical protein compare
IAI46_06645 -0.7 -1.5 D-2-hydroxyacid dehydrogenase family protein compare
IAI46_15645 -0.7 -1.6 ABC transporter permease compare
IAI46_14750 -0.7 -1.3 hypothetical protein compare
IAI46_11875 -0.7 -1.2 DUF1003 domain-containing protein compare
IAI46_05240 -0.7 -1.9 recombination protein RecR compare
IAI46_12655 -0.7 -1.0 LysR family transcriptional regulator compare
IAI46_11690 -0.7 -1.2 ATP-dependent dethiobiotin synthetase BioD compare
IAI46_11135 -0.7 -1.9 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
IAI46_24975 -0.7 -1.7 Der GTPase-activating protein YihI compare
IAI46_10590 -0.7 -1.6 hypothetical protein compare
IAI46_09185 -0.7 -1.0 hypothetical protein compare
IAI46_13600 -0.7 -1.3 hypothetical protein compare
IAI46_07240 -0.6 -1.6 urea ABC transporter ATP-binding protein UrtD compare
IAI46_21470 -0.6 -1.7 oxidative damage protection protein compare
IAI46_11490 -0.6 -2.3 electron transport complex subunit RsxA compare
IAI46_09370 -0.6 -1.9 hypothetical protein compare
IAI46_03235 -0.6 -1.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI46_12615 -0.6 -1.2 hypothetical protein compare
IAI46_24700 -0.6 -1.0 glutaredoxin 3 compare
IAI46_14070 -0.6 -3.1 IS3 family transposase compare
IAI46_22335 -0.6 -4.5 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI46_09145 -0.6 -1.5 aldehyde dehydrogenase (NADP(+)) compare
IAI46_11605 -0.6 -2.0 Mal regulon transcriptional regulator MalI compare
IAI46_19640 -0.6 -2.7 outer membrane protein assembly factor BamE compare
IAI46_11260 -0.6 -0.6 Grx4 family monothiol glutaredoxin compare
IAI46_18525 -0.6 -1.7 DUF2919 domain-containing protein compare
IAI46_17705 -0.6 -2.3 NADH-quinone oxidoreductase subunit B compare
IAI46_15385 -0.6 -1.4 ABC transporter ATP-binding protein compare
IAI46_21285 -0.6 -2.6 YacC family pilotin-like protein compare
IAI46_04170 -0.6 -1.7 allantoin racemase compare
IAI46_10690 -0.6 -2.4 amidohydrolase family protein compare
IAI46_17910 -0.6 -1.8 protein disulfide oxidoreductase compare
IAI46_16370 -0.6 -2.6 phenylacetate-CoA oxygenase/reductase subunit PaaK compare
IAI46_14220 -0.6 -2.4 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI46_17650 -0.6 -1.8 NADH-quinone oxidoreductase subunit NuoN compare
IAI46_03325 -0.6 -1.6 glucose uptake inhibitor SgrT compare
IAI46_12800 -0.6 -1.3 protocatechuate 3,4-dioxygenase subunit beta compare
IAI46_10875 -0.6 -1.1 metal ABC transporter permease compare
IAI46_13280 -0.6 -3.0 DUF1471 domain-containing protein compare
IAI46_15985 -0.6 -2.2 translesion error-prone DNA polymerase V autoproteolytic subunit compare
IAI46_12680 -0.6 -2.6 amino acid permease compare
IAI46_06670 -0.6 -2.4 type 1 fimbrial protein compare
IAI46_00915 -0.6 -1.6 DUF1145 family protein compare
IAI46_02875 -0.6 -2.7 peptide chain release factor 3 compare
IAI46_16165 -0.6 -0.8 3-oxoadipyl-CoA thiolase compare


Specific Phenotypes

None in this experiment

For Serratia liquefaciens MT49 in stress experiments

For stress Cadmium acetate dihydrate across organisms