| | gene | name | fitness | t score | description | |
|---|
| b0004 | thrC | -6.0 | -4.2 | threonine synthase (NCBI) | compare |
| b0907 | serC | -5.5 | -7.6 | phosphoserine aminotransferase (NCBI) | compare |
| b2320 | pdxB | -5.4 | -8.3 | erythronate-4-phosphate dehydrogenase (NCBI) | compare |
| b0052 | pdxA | -4.8 | -9.8 | 4-hydroxythreonine-4-phosphate dehydrogenase (NCBI) | compare |
| b0002 | thrA | -4.4 | -16.1 | bifunctional aspartokinase I/homeserine dehydrogenase I (NCBI) | compare |
| b1130 | phoP | -4.0 | -7.6 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b1129 | phoQ | -3.8 | -8.5 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b0003 | thrB | -3.4 | -6.7 | homoserine kinase (NCBI) | compare |
| b2564 | pdxJ | -3.4 | -4.6 | pyridoxal phosphate biosynthetic protein (NCBI) | compare |
| b0775 | bioB | -3.3 | -6.2 | biotin synthase (NCBI) | compare |
| b3916 | pfkA | -3.0 | -4.5 | 6-phosphofructokinase (NCBI) | compare |
| b4208 | cycA | -2.8 | -12.2 | D-alanine/D-serine/glycine transporter (NCBI) | compare |
| b2297 | pta | -2.6 | -2.5 | phosphate acetyltransferase (NCBI) | compare |
| b2567 | rnc | -2.6 | -1.8 | ribonuclease III (NCBI) | compare |
| b0118 | acnB | -2.5 | -3.7 | aconitate hydratase (NCBI) | compare |
| b2531 | iscR | -2.4 | -2.3 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0500 | ybbD | -2.4 | -2.3 | hypothetical protein (RefSeq) | compare |
| b0750 | nadA | -2.4 | -5.7 | quinolinate synthetase (NCBI) | compare |
| b3764 | yifE | -2.3 | -6.7 | hypothetical protein (NCBI) | compare |
| b2518 | ndk | -2.3 | -3.7 | nucleoside diphosphate kinase (NCBI) | compare |
| b4163 | glyV | -2.2 | -2.0 | tRNA-Gly (NCBI) | compare |
| b0401 | brnQ | -2.2 | -9.4 | predicted branched chain amino acid transporter (LIV-II) (NCBI) | compare |
| b4172 | hfq | -2.2 | -2.1 | RNA-binding protein Hfq (NCBI) | compare |
| b0109 | nadC | -2.1 | -8.0 | nicotinate-nucleotide pyrophosphorylase (NCBI) | compare |
| b2479 | gcvR | -2.1 | -5.3 | transcriptional regulation of gcv operon (VIMSS) | compare |
| b0778 | bioD | -2.1 | -4.9 | dethiobiotin synthetase (NCBI) | compare |
| b0658 | ybeX | -2.0 | -8.2 | predicteed ion transport (NCBI) | compare |
| b0767 | ybhE | -2.0 | -4.6 | 6-phosphogluconolactonase (NCBI) | compare |
| b1865 | nudB | -2.0 | -2.1 | dATP pyrophosphohydrolase (NCBI) | compare |
| b0114 | aceE | -1.9 | -3.4 | pyruvate dehydrogenase subunit E1 (NCBI) | compare |
| b3021 | ygiT | -1.9 | -4.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3121 | yhaC | -1.8 | -2.4 | hypothetical protein (NCBI) | compare |
| b3412 | bioH | -1.8 | -7.6 | carboxylesterase of pimeloyl-CoA synthesis (NCBI) | compare |
| b3977 | tyrU | -1.8 | -1.7 | tRNA-Tyr (NCBI) | compare |
| b0774 | bioA | -1.8 | -5.0 | adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI) | conserved |
| b2498 | upp | -1.8 | -3.8 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b4242 | mgtA | -1.7 | -12.7 | magnesium transporter (NCBI) | compare |
| b0777 | bioC | -1.7 | -4.5 | predicted methltransferase, enzyme of biotin synthesis (NCBI) | compare |
| b3728 | pstS | -1.7 | -5.7 | phosphate transporter subunit (NCBI) | compare |
| b1347 | ydaC | -1.7 | -2.2 | Rac prophage; predicted protein (NCBI) | compare |
| b2330 | yfcB | -1.7 | -2.9 | putative adenine-specific methylase (VIMSS) | compare |
| b2574 | nadB | -1.7 | -9.1 | L-aspartate oxidase (NCBI) | compare |
| b1850 | eda | -1.7 | -2.2 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b4480 | hdfR | -1.6 | -6.0 | transcriptional regulator HdfR (NCBI) | compare |
| b4179 | vacB | -1.6 | -7.6 | putative enzyme (VIMSS) | compare |
| b2784 | relA | -1.6 | -9.5 | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | compare |
| b1942 | fliJ | -1.6 | -1.8 | flagellar biosynthesis chaperone (NCBI) | compare |
| b3082 | ygjM | -1.6 | -3.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3870 | glnA | -1.5 | -3.2 | glutamine synthetase (NCBI) | compare |
| b0776 | bioF | -1.5 | -5.6 | 8-amino-7-oxononanoate synthase (NCBI) | compare |
| b1726 | yniB | -1.5 | -3.2 | predicted inner membrane protein (NCBI) | compare |
| b3164 | pnp | -1.5 | -4.0 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b2055 | wcaE | -1.5 | -3.5 | predicted glycosyl transferase (NCBI) | compare |
| b1545 | pinQ | -1.5 | -1.6 | Qin prophage; predicted site-specific recombinase (NCBI) | compare |
| b4202 | rpsR | -1.5 | -2.5 | 30S ribosomal protein S18 (NCBI) | compare |
| b4243 | yjgF | -1.5 | -5.5 | orf, hypothetical protein (VIMSS) | compare |
| b4146 | yjeK | -1.4 | -3.8 | predicted lysine aminomutase (NCBI) | compare |
| b3636 | rpmG | -1.3 | -1.6 | 50S ribosomal protein L33 (NCBI) | compare |
| b2699 | recA | -1.3 | -2.2 | recombinase A (NCBI) | compare |
| b1671 | ydhX | -1.3 | -2.1 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b2894 | xerD | -1.3 | -1.7 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b3442 | yhhZ | -1.2 | -2.9 | hypothetical protein (NCBI) | compare |
| b3261 | fis | -1.2 | -3.3 | DNA-binding protein Fis (NCBI) | compare |
| b2830 | nudH | -1.2 | -2.0 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b1295 | ymjA | -1.2 | -1.7 | hypothetical protein (NCBI) | compare |
| b1058 | yceO | -1.2 | -1.0 | hypothetical protein (NCBI) | compare |
| b2620 | smpB | -1.2 | -2.3 | SsrA-binding protein (NCBI) | compare |
| b1286 | rnb | -1.2 | -2.8 | exoribonuclease II (NCBI) | compare |
| b1351 | racC | -1.2 | -1.6 | Rac prophage; predicted protein (NCBI) | compare |
| b2528 | iscA | -1.1 | -1.7 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b4171 | miaA | -1.1 | -5.0 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b3962 | udhA | -1.1 | -6.6 | putative oxidoreductase (VIMSS) | compare |
| b0630 | lipB | -1.1 | -1.7 | protein of lipoate biosynthesis (VIMSS) | compare |
| b2209 | eco | -1.1 | -2.4 | ecotin precursor (NCBI) | compare |
| b1257 | yciE | -1.1 | -2.0 | hypothetical protein (NCBI) | compare |
| b4603 | rseX | -1.1 | -1.1 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b1269 | rluB | -1.0 | -2.6 | 23S rRNA pseudouridylate synthase (NCBI) | compare |
| b4279 | yjhB | -1.0 | -3.6 | putative transport protein (VIMSS) | compare |
| b4375 | prfC | -1.0 | -5.5 | peptide chain release factor 3 (NCBI) | compare |
| b2938 | speA | -1.0 | -6.5 | arginine decarboxylase (NCBI) | compare |
| b0145 | dksA | -1.0 | -3.0 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b2318 | truA | -1.0 | -3.3 | tRNA pseudouridine synthase A (NCBI) | compare |
| b4702 | mgtL | -1.0 | -2.7 | regulatory leader peptide for mgtA (NCBI) | compare |
| b3644 | yicC | -1.0 | -4.5 | hypothetical protein (NCBI) | compare |
| b2569 | lepA | -1.0 | -3.1 | GTP-binding protein LepA (NCBI) | compare |
| b1144 | ymfJ | -1.0 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b0603 | ybdO | -1.0 | -2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1307 | pspD | -0.9 | -1.7 | peripheral inner membrane phage-shock protein (NCBI) | compare |
| b1550 | b1550 | -0.9 | -1.1 | orf, hypothetical protein (VIMSS) | compare |
| b4582 | yoeA | -0.9 | -1.8 | no description | compare |
| b0049 | apaH | -0.9 | -2.9 | diadenosinetetraphosphatase (NCBI) | compare |
| b0849 | grxA | -0.9 | -2.3 | glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) (NCBI) | compare |
| b1084 | rne | -0.9 | -3.6 | fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) | compare |
| b1085 | b1085 | -0.9 | -1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2625 | yfjI | -0.9 | -4.0 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b4042 | dgkA | -0.9 | -2.5 | diacylglycerol kinase (NCBI) | compare |
| b0001 | thrL | -0.9 | -0.9 | thr operon leader peptide (NCBI) | compare |
| b0623 | cspE | -0.9 | -2.1 | cold shock protein E (NCBI) | compare |
| b4436 | ryeC | -0.9 | -1.2 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b1831 | proQ | -0.9 | -2.1 | putative solute/DNA competence effector (NCBI) | compare |
| b1581 | rspA | -0.9 | -2.0 | predicted dehydratase (NCBI) | compare |
| b2937 | speB | -0.9 | -4.7 | agmatinase (NCBI) | compare |
| b2293 | yfbT | -0.9 | -2.1 | putative phosphatase (VIMSS) | compare |
| b4025 | pgi | -0.9 | -5.2 | glucose-6-phosphate isomerase (NCBI) | compare |
| b2125 | yehT | -0.9 | -3.8 | orf, hypothetical protein (VIMSS) | compare |
| b0238 | gpt | -0.8 | -2.7 | xanthine phosphoribosyltransferase (NCBI) | compare |
| b1400 | paaY | -0.8 | -1.5 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b1814 | sdaA | -0.8 | -2.5 | L-serine deaminase I (NCBI) | compare |
| b1497 | b1497 | -0.8 | -2.5 | putative enzyme (VIMSS) | compare |
| b2853 | ygeI | -0.8 | -2.4 | hypothetical protein (NCBI) | compare |
| b2579 | yfiD | -0.8 | -1.9 | pyruvate formate lyase subunit (NCBI) | compare |
| b0685 | ybfE | -0.8 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1160 | elbA | -0.8 | -1.9 | hypothetical protein (NCBI) | compare |
| b1418 | cybB | -0.8 | -1.7 | cytochrome b(561) (VIMSS) | compare |
| b0705 | ybfL | -0.8 | -2.2 | putative receptor protein (VIMSS) | compare |
| b3386 | rpe | -0.8 | -1.4 | ribulose-phosphate 3-epimerase (NCBI) | compare |
| b0142 | folK | -0.8 | -1.0 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b4438 | cyaR | -0.8 | -1.3 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b3500 | gor | -0.8 | -1.2 | glutathione reductase (NCBI) | compare |
| b3778 | rep | -0.8 | -4.6 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b3726 | pstA | -0.8 | -3.3 | phosphate transporter subunit (NCBI) | compare |
| b3068 | ygjF | -0.7 | -2.1 | G/U mismatch-specific DNA glycosylase (NCBI) | compare |
| b1409 | ynbB | -0.7 | -3.0 | predicted CDP-diglyceride synthase (NCBI) | compare |
| b4062 | soxS | -0.7 | -2.0 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4443 | gcvB | -0.7 | -1.1 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b4546 | ypeB | -0.7 | -1.0 | hypothetical protein (NCBI) | compare |
| b1159 | mcrA | -0.7 | -2.7 | e14 prophage; 5-methylcytosine-specific restriction endonuclease B (NCBI) | compare |
| b2934 | cmtB | -0.7 | -1.5 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1293 | sapB | -0.7 | -1.2 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1346 | ydaQ | -0.7 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2029 | gnd | -0.7 | -3.8 | 6-phosphogluconate dehydrogenase (NCBI) | compare |
| b3727 | pstC | -0.7 | -3.0 | phosphate transporter subunit (NCBI) | compare |
| b0249 | ykfF | -0.7 | -1.8 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b1179 | ycgL | -0.7 | -1.8 | conserved protein (NCBI) | compare |
| b0696 | kdpC | -0.7 | -1.5 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b0881 | clpS | -0.7 | -1.6 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b0438 | clpX | -0.7 | -3.7 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b1753 | ynjA | -0.7 | -1.6 | hypothetical protein (NCBI) | compare |
| b3483 | yhhH | -0.7 | -0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1167 | ymgC | -0.7 | -1.1 | hypothetical protein (NCBI) | compare |
| b1476 | fdnI | -0.7 | -1.0 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b1109 | ndh | -0.7 | -2.6 | respiratory NADH dehydrogenase 2/cupric reductase (NCBI) | compare |
| b2289 | lrhA | -0.6 | -4.3 | DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes (NCBI) | compare |
| b4497 | yeeL | -0.6 | -2.5 | no description | compare |
| b4590 | ybfK | -0.6 | -2.8 | hypothetical protein (RefSeq) | compare |
| b4515 | ybgT | -0.6 | -1.1 | hypothetical protein (NCBI) | compare |
| b4370 | leuQ | -0.6 | -1.8 | tRNA-Leu (NCBI) | compare |
| b1007 | b1007 | -0.6 | -1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2847 | yqeI | -0.6 | -3.5 | predicted transcriptional regulator (NCBI) | compare |
| b3504 | yhiS | -0.6 | -1.7 | hypothetical protein (RefSeq) | compare |
| b0450 | glnK | -0.6 | -1.6 | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB (NCBI) | compare |
| b3725 | pstB | -0.6 | -1.5 | phosphate transporter subunit (NCBI) | compare |
| b1259 | yciG | -0.6 | -0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1576 | ydfD | -0.6 | -1.3 | Qin prophage; predicted protein (NCBI) | compare |
| b3493 | pitA | -0.6 | -4.1 | phosphate transporter, low-affinity (NCBI) | compare |
| b1480 | sra | -0.6 | -1.1 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b3204 | ptsN | -0.6 | -2.4 | sugar-specific enzyme IIA component of PTS (NCBI) | compare |
| b0481 | ybaK | -0.6 | -2.1 | hypothetical protein (NCBI) | compare |
| b1278 | pgpB | -0.6 | -1.4 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b0999 | cbpM | -0.6 | -1.8 | modulator of CbpA co-chaperone (NCBI) | compare |
| b1575 | dicB | -0.6 | -2.1 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b4041 | plsB | -0.6 | -1.4 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b1659 | ydhB | -0.6 | -1.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3741 | gidA | -0.6 | -3.7 | glucose-inhibited division protein A (NCBI) | compare |
| b0505 | allA | -0.6 | -1.5 | ureidoglycolate hydrolase (NCBI) | compare |
| b2101 | yegW | -0.6 | -2.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1926 | fliT | -0.6 | -1.0 | predicted chaperone (NCBI) | compare |
| b1292 | sapC | -0.6 | -1.3 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b3162 | deaD | -0.6 | -2.9 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b1712 | ihfA | -0.6 | -1.7 | integration host factor subunit alpha (NCBI) | compare |
| b0143 | pcnB | -0.6 | -3.4 | poly(A) polymerase I (VIMSS) | compare |
| b2248 | yfaX | -0.6 | -1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0888 | trxB | -0.6 | -1.7 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b2207 | napD | -0.6 | -2.3 | assembly protein for periplasmic nitrate reductase (NCBI) | compare |
| b4570 | lomR | -0.6 | -1.1 | no description | compare |
| b1448 | yncA | -0.6 | -0.6 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b2082 | ogrK | -0.6 | -1.8 | DNA-binding transcriptional regulator prophage P2 remnant (NCBI) | compare |
| b0082 | mraW | -0.6 | -2.2 | S-adenosyl-methyltransferase (NCBI) | compare |
| b3469 | zntA | -0.6 | -4.5 | zinc, cobalt and lead efflux system (NCBI) | compare |
| b0018 | mokC | -0.6 | -0.8 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b3206 | npr | -0.6 | -2.8 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b2017 | yefM | -0.6 | -1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1539 | ydfG | -0.6 | -1.9 | L-allo-threonine dehydrogenase, NAD(P)-binding (NCBI) | compare |
| b4393 | trpR | -0.6 | -3.2 | Trp operon repressor (NCBI) | compare |
| b1859 | znuB | -0.6 | -3.0 | high-affinity zinc transporter membrane component (NCBI) | compare |
| b4699 | fnrS | -0.6 | -0.7 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b0051 | ksgA | -0.6 | -2.7 | dimethyladenosine transferase (NCBI) | compare |
| b4558 | yifL | -0.6 | -2.4 | predicted lipoprotein (NCBI) | compare |
| b1487 | ddpA | -0.6 | -1.8 | D-ala-D-a la transporter subunit (NCBI) | compare |
| b4630 | ykgP | -0.5 | -0.9 | no description | compare |
| b2205 | napG | -0.5 | -2.7 | quinol dehydrogenase periplasmic component (NCBI) | compare |
| b4445 | omrB | -0.5 | -1.9 | sRNA down regulates OM proteins; positively regulated by OmpR/EnvZ; binds Hfq (RefSeq) | compare |
| b4416 | rybA | -0.5 | -0.8 | unknown RNA (NCBI) | compare |
| b3811 | xerC | -0.5 | -1.5 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b2582 | trxC | -0.5 | -0.9 | thioredoxin 2 (NCBI) | compare |
| b1618 | uidR | -0.5 | -1.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2309 | hisJ | -0.5 | -2.2 | histidine/lysine/arginine/ornithine transporter subunit (NCBI) | compare |
| b2340 | sixA | -0.5 | -2.0 | phosphohistidine phosphatase (NCBI) | compare |
| b2009 | sbmC | -0.5 | -1.8 | DNA gyrase inhibitor (NCBI) | compare |
| b1383 | ydbL | -0.5 | -1.2 | orf, hypothetical protein (VIMSS) | compare |