Experiment set1IT070 for Enterobacter asburiae PDN3

Compare to:

M9 with sucrose and trichloroethylene 76.3 uM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_2027 -5.5 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_2916 -4.4 -8.2 diaminopimelate decarboxylase compare
EX28DRAFT_1956 -4.1 -1.1 hypothetical protein compare
EX28DRAFT_0538 -4.0 -6.8 histidinol-phosphate aminotransferase compare
EX28DRAFT_3669 -3.9 -6.1 3-isopropylmalate dehydrogenase compare
EX28DRAFT_4331 -3.7 -12.0 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_4493 -3.7 -6.0 Transcriptional regulator compare
EX28DRAFT_2701 -3.6 -9.1 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_3668 -3.6 -9.1 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_0125 -3.6 -0.9 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_4446 -3.5 -12.0 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_2651 -3.5 -4.8 glutamate 5-kinase compare
EX28DRAFT_0534 -3.3 -5.5 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_2650 -3.2 -7.7 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_4444 -3.2 -6.2 threonine ammonia-lyase, biosynthetic, long form compare
EX28DRAFT_0092 -3.2 -1.7 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_0046 -3.1 -3.1 shikimate dehydrogenase compare
EX28DRAFT_3711 -3.1 -1.1 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_4443 -3.0 -10.0 dihydroxy-acid dehydratase compare
EX28DRAFT_0537 -3.0 -10.2 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_4419 -3.0 -2.9 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_0935 -3.0 -8.1 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_3046 -2.9 -6.4 cystathionine beta-lyase, bacterial compare
EX28DRAFT_2425 -2.9 -1.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1382 -2.9 -1.7 transcriptional regulator, TetR family compare
EX28DRAFT_0932 -2.9 -4.5 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_4422 -2.9 -7.4 argininosuccinate lyase compare
EX28DRAFT_2531 -2.9 -4.4 endopeptidase La compare
EX28DRAFT_2958 -2.9 -1.1 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_3670 -2.9 -9.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_3614 -2.8 -10.9 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_2252 -2.8 -2.4 TolA protein compare
EX28DRAFT_4156 -2.8 -1.5 ribulose-phosphate 3-epimerase compare
EX28DRAFT_1986 -2.8 -1.0 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_3224 -2.8 -6.0 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_2265 -2.8 -2.7 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_0934 -2.8 -10.4 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_0535 -2.8 -5.4 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_4418 -2.8 -8.6 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_0292 -2.8 -3.1 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_0933 -2.8 -8.3 tryptophan synthase, beta subunit compare
EX28DRAFT_3667 -2.7 -2.5 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_2917 -2.7 -3.6 Transcriptional regulator compare
EX28DRAFT_4445 -2.7 -7.0 Transcriptional regulator compare
EX28DRAFT_4153 -2.7 -2.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_2699 -2.6 -7.7 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_0536 -2.6 -3.7 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_3401 -2.6 -1.2 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_2548 -2.6 -3.9 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_0539 -2.6 -8.3 histidinol dehydrogenase compare
EX28DRAFT_2853 -2.6 -5.2 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_0533 -2.6 -6.7 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_0214 -2.6 -3.5 cysteine synthase A compare
EX28DRAFT_2851 -2.5 -4.0 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_4478 -2.5 -5.4 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_3671 -2.5 -3.4 RNA compare
EX28DRAFT_1841 -2.4 -1.1 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_3616 -2.4 -2.5 threonine synthase compare
EX28DRAFT_3646 -2.4 -5.6 4-hydroxythreonine-4-phosphate dehydrogenase compare
EX28DRAFT_3574 -2.4 -0.9 Protein of unknown function (DUF1435) compare
EX28DRAFT_0540 -2.4 -6.2 ATP phosphoribosyltransferase compare
EX28DRAFT_4411 -2.4 -7.7 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_0936 -2.3 -5.4 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_3461 -2.3 -4.2 ornithine carbamoyltransferase compare
EX28DRAFT_2272 -2.3 -7.9 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_0469 -2.2 -3.8 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
EX28DRAFT_2846 -2.2 -5.0 adenylyl-sulfate kinase compare
EX28DRAFT_3426 -2.1 -1.3 conserved hypothetical protein EF_0831/AHA_3912 compare
EX28DRAFT_2585 -2.1 -1.7 pyrroline-5-carboxylate reductase compare
EX28DRAFT_2270 -2.1 -1.0 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_3079 -2.1 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0392 -1.9 -1.3 hypothetical protein compare
EX28DRAFT_2893 -1.9 -7.0 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_0374 -1.9 -1.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2852 -1.9 -5.2 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_1050 -1.8 -2.8 luciferase family oxidoreductase, group 1 compare
EX28DRAFT_4442 -1.8 -4.1 branched-chain amino acid aminotransferase, group I compare
EX28DRAFT_2589 -1.8 -0.9 Sigma-S stabilisation anti-adaptor protein compare
EX28DRAFT_2938 -1.8 -1.8 tRNA compare
EX28DRAFT_3687 -1.8 -1.0 D-alanine--D-alanine ligase compare
EX28DRAFT_1719 -1.8 -1.0 integration host factor, alpha subunit compare
EX28DRAFT_4077 -1.8 -1.1 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
EX28DRAFT_0284 -1.8 -6.4 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_0523 -1.7 -1.2 Glycosyltransferase like family 2 compare
EX28DRAFT_0901 -1.7 -1.1 hypothetical protein compare
EX28DRAFT_2848 -1.7 -7.0 sulfate adenylyltransferase, small subunit compare
EX28DRAFT_2847 -1.7 -7.1 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_1596 -1.7 -0.9 Protein of unknown function (DUF1019) compare
EX28DRAFT_1293 -1.7 -0.8 hypothetical protein compare
EX28DRAFT_3315 -1.6 -1.0 Protein of unknown function (DUF2556) compare
EX28DRAFT_0724 -1.6 -1.1 GAF domain-containing protein compare
EX28DRAFT_0038 -1.6 -1.4 K+ transport systems, NAD-binding component compare
EX28DRAFT_3710 -1.6 -4.9 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_1644 -1.6 -3.0 Predicted oxidoreductase compare
EX28DRAFT_2421 -1.5 -0.9 Protein of unknown function (DUF1158) compare
EX28DRAFT_4341 -1.5 -2.2 Protein-disulfide isomerase compare
EX28DRAFT_4383 -1.5 -6.4 transcriptional regulator, XRE family with cupin sensor compare
EX28DRAFT_4452 -1.5 -1.6 thioredoxin compare
EX28DRAFT_4544 -1.5 -1.5 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_2045 -1.5 -0.7 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_4420 -1.4 -0.9 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_2472 -1.4 -0.7 Membrane protein implicated in regulation of membrane protease activity compare
EX28DRAFT_2849 -1.4 -3.9 uroporphyrin-III C-methyltransferase compare
EX28DRAFT_0948 -1.4 -1.3 hypothetical protein compare
EX28DRAFT_2037 -1.4 -1.2 DMSO reductase, iron-sulfur subunit compare
EX28DRAFT_2008 -1.4 -4.8 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_0545 -1.4 -2.1 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_3613 -1.4 -4.6 RNA compare
EX28DRAFT_1650 -1.4 -1.6 ribonuclease T compare
EX28DRAFT_3058 -1.3 -1.3 Signal transduction histidine kinase compare
EX28DRAFT_1414 -1.2 -1.2 phenylacetate degradation probable enoyl-CoA hydratase paaB compare
EX28DRAFT_1376 -1.2 -1.1 hypothetical protein compare
EX28DRAFT_3481 -1.2 -1.7 hypothetical protein compare
EX28DRAFT_0190 -1.2 -0.9 transcriptional regulator, Spx/MgsR family compare
EX28DRAFT_4440 -1.2 -4.6 acetolactate synthase, large subunit (EC 2.2.1.6) compare
EX28DRAFT_3647 -1.2 -2.7 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_2702 -1.2 -3.8 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_4386 -1.2 -2.2 Signal transduction histidine kinase compare
EX28DRAFT_0529 -1.2 -2.9 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_3879 -1.1 -2.2 Glycosyltransferase compare
EX28DRAFT_3275 -1.1 -6.6 Glutamate synthase domain 2 compare
EX28DRAFT_0766 -1.1 -2.6 Glycine/D-amino acid oxidases (deaminating) compare
EX28DRAFT_4158 -1.1 -2.9 tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
EX28DRAFT_2043 -1.1 -6.2 transcriptional regulator, AsnC family compare
EX28DRAFT_2240 -1.1 -1.4 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_0423 -1.1 -0.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
EX28DRAFT_0687 -1.1 -1.9 tRNA (cmo5U34)-methyltransferase compare
EX28DRAFT_4534 -1.1 -2.3 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
EX28DRAFT_0285 -1.1 -2.6 Aspartate-semialdehyde dehydrogenase compare
EX28DRAFT_0693 -1.1 -0.9 DNA-binding regulatory protein, YebC/PmpR family compare
EX28DRAFT_0494 -1.1 -0.8 Protein-tyrosine-phosphatase compare
EX28DRAFT_0058 -1.1 -2.6 23S compare
EX28DRAFT_2128 -1.1 -1.8 Glutathione S-transferase compare
EX28DRAFT_4441 -1.0 -2.3 acetolactate synthase, small subunit (EC 2.2.1.6) compare
EX28DRAFT_2992 -1.0 -2.9 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family compare
EX28DRAFT_0861 -1.0 -2.9 Response regulator receiver domain compare
EX28DRAFT_3285 -1.0 -3.4 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_2492 -1.0 -1.8 Protein of unknown function (DUF2496) compare
EX28DRAFT_1128 -1.0 -1.1 hypothetical protein compare
EX28DRAFT_0091 -1.0 -0.6 hypothetical protein compare
EX28DRAFT_0757 -1.0 -3.5 septum site-determining protein MinD compare
EX28DRAFT_4421 -1.0 -0.8 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_2126 -1.0 -1.9 transcriptional regulator, DeoR family compare
EX28DRAFT_0272 -1.0 -1.3 phosphohistidine phosphatase, SixA compare
EX28DRAFT_3276 -1.0 -2.6 glutamate synthase small subunit family protein, proteobacterial compare
EX28DRAFT_4496 -1.0 -2.9 uridine phosphorylase compare
EX28DRAFT_1000 -1.0 -1.7 intracellular protease, PfpI family compare
EX28DRAFT_0706 -1.0 -1.6 Entner-Doudoroff aldolase compare
EX28DRAFT_1308 -1.0 -1.2 hypothetical protein compare
EX28DRAFT_2867 -1.0 -3.3 glycerate kinase compare
EX28DRAFT_2873 -0.9 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1530 -0.9 -1.3 hypothetical protein compare
EX28DRAFT_3214 -0.9 -1.6 RNA compare
EX28DRAFT_0620 -0.9 -0.9 Flagellar protein FliT compare
EX28DRAFT_1124 -0.9 -5.3 sucrose-6-phosphate hydrolase compare
EX28DRAFT_4061 -0.9 -2.8 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_2288 -0.9 -1.1 negative regulator of replication initiation SeqA compare
EX28DRAFT_0255 -0.9 -1.3 Domain of unknown function (DUF4123) compare
EX28DRAFT_3449 -0.9 -1.5 Predicted membrane protein compare
EX28DRAFT_2371 -0.9 -1.0 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
EX28DRAFT_2075 -0.9 -1.6 type II secretion system protein H compare
EX28DRAFT_0712 -0.9 -0.7 DNA polymerase III, theta subunit compare
EX28DRAFT_3645 -0.9 -1.4 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_0208 -0.9 -2.9 sulfate ABC transporter, ATP-binding protein compare
EX28DRAFT_0206 -0.9 -2.9 sulfate ABC transporter, permease protein CysT compare
EX28DRAFT_0111 -0.9 -1.3 FeS cluster assembly scaffold IscU compare
EX28DRAFT_4350 -0.9 -0.6 nitrogen regulation protein NR(I) compare
EX28DRAFT_0274 -0.9 -2.0 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific compare
EX28DRAFT_1056 -0.9 -1.2 ABC-type polar amino acid transport system, ATPase component compare
EX28DRAFT_2723 -0.9 -1.4 SsrA-binding protein compare
EX28DRAFT_2348 -0.9 -0.6 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_3056 -0.9 -1.2 TIGR00156 family protein compare
EX28DRAFT_4183 -0.9 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
EX28DRAFT_0921 -0.8 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2378 -0.8 -1.1 ABC-type enterobactin transport system, permease component compare
EX28DRAFT_1123 -0.8 -3.2 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_2527 -0.8 -0.8 acyl-CoA thioester hydrolase, YbgC/YbaW family compare
EX28DRAFT_1497 -0.8 -0.8 hypothetical protein compare
EX28DRAFT_1122 -0.8 -3.6 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_1385 -0.8 -1.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
EX28DRAFT_2245 -0.8 -2.9 quinolinate synthetase (EC 2.5.1.72) compare
EX28DRAFT_2509 -0.8 -1.9 transcriptional regulator, LacI family compare
EX28DRAFT_2474 -0.8 -3.2 copper-(or silver)-translocating P-type ATPase compare
EX28DRAFT_4299 -0.8 -0.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
EX28DRAFT_0579 -0.8 -0.9 Uncharacterized protein conserved in bacteria (DUF2256) compare
EX28DRAFT_3517 -0.8 -2.1 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides compare
EX28DRAFT_3309 -0.8 -1.2 Predicted membrane protein compare
EX28DRAFT_2795 -0.8 -1.1 Glucitol operon activator compare
EX28DRAFT_2271 -0.8 -1.9 hypothetical protein compare
EX28DRAFT_2708 -0.8 -0.9 Protein of unknown function (DUF2946) compare
EX28DRAFT_2979 -0.8 -1.4 Protein of unknown function (DUF2684) compare
EX28DRAFT_1679 -0.8 -2.0 pyruvate kinase compare
EX28DRAFT_1418 -0.8 -1.3 phenylacetate-CoA oxygenase, PaaI subunit compare
EX28DRAFT_1590 -0.8 -0.7 hypothetical protein compare
EX28DRAFT_2532 -0.8 -1.6 RNA compare
EX28DRAFT_2177 -0.8 -1.7 Bacterial PH domain/Short C-terminal domain compare
EX28DRAFT_1477 -0.8 -0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0501 -0.7 -1.1 colanic acid biosynthesis acetyltransferase WcaF compare
EX28DRAFT_0166 -0.7 -3.8 polyphosphate kinase 1 compare
EX28DRAFT_0721 -0.7 -1.8 NOL1/NOP2/sun family putative RNA methylase compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress Sucrose across organisms