Experiment set1IT070 for Agrobacterium fabrum C58

Compare to:

L-Alanine carbon source

200 most important genes:

  gene name fitness t score description  
Atu1750 -7.5 -6.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu1687 -5.8 -10.7 anthranilate phosphoribosyltransferase compare
Atu0030 -5.7 -2.3 phosphocarrier protein HPr compare
Atu0678 -5.6 -6.7 histidyl-tRNA synthetase compare
Atu3707 -5.5 -5.4 phosphoserine aminotransferase compare
Atu0043 -5.5 -3.8 imidazoleglycerol-phosphate dehydratase compare
Atu1844 -5.5 -4.5 Phosphoribosylformylglycinamidine synthetase compare
Atu2289 -5.5 -22.1 anthranilate synthase component I and II compare
Atu2036 -5.4 -19.8 acetolactate synthase III, large subunit compare
Atu3706 -5.4 -10.3 D-3-phosphoglycerate dehydrogenase compare
Atu0679 -5.3 -8.1 ATP phosphoribosyltransferase compare
Atu2040 -5.3 -6.6 phosphoserine phosphatase compare
Atu0400 -5.2 -6.2 orotate phosphoribosyltransferase compare
Atu2264 -5.1 -17.4 2-isopropylmalate synthase compare
Atu1140 -4.9 -5.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0099 -4.9 -13.6 prephenate dehydratase compare
Atu2709 -4.8 -19.4 3-isopropylmalate dehydratase, large subunit compare
Atu1588 -4.7 -12.9 homoserine dehydrogenase compare
Atu1359 -4.7 -1.8 dnaK deletion suppressor protein compare
Atu0041 -4.7 -3.2 glutamine amidotransferase compare
Atu3291 -4.6 -9.2 Lpr family transcriptional regulator conserved
Atu1688 -4.5 -8.8 indole-3-glycerol-phosphate synthase compare
Atu1075 -4.5 -8.8 amidophosphoribosyltransferase compare
Atu3755 -4.4 -6.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0399 -4.4 -8.4 dihydroorotase compare
Atu2791 -4.3 -10.0 3-isopropylmalate dehydrogenase compare
Atu1850 -4.3 -6.4 phosphoribosylformylglycinamidine synthetase II compare
Atu3293 -4.3 -12.3 D-amino acid dehydrogenase small subunit conserved
Atu3754 -4.3 -6.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3292 -4.3 -14.1 alanine racemase conserved
Atu2726 -4.2 -23.4 pyruvate carboxylase compare
Atu1205 -4.2 -15.5 threonine dehydratase compare
Atu0017 -4.1 -4.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0723 -4.0 -3.8 FAD dependent oxidoreductase compare
Atu2718 -3.9 -9.3 homoserine O-succinyltransferase compare
Atu4505 -3.9 -13.3 LacI family transcriptional regulator compare
Atu3469 -3.9 -4.6 phosphoglyceromutase compare
Atu0537 -3.9 -8.1 histidinol dehydrogenase compare
Atu3482 -3.9 -10.8 pantoate--beta-alanine ligase compare
Atu3885 -3.8 -13.5 inositol monophosphatase compare
Atu3731 -3.8 -11.4 5-formyltetrahydrofolate cyclo-ligase compare
Atu0039 -3.7 -4.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu0422 -3.7 -3.5 ABC transporter, membrane spanning protein compare
Atu0035 -3.7 -14.3 phosphoenolpyruvate carboxykinase compare
Atu2790 -3.7 -3.5 3-isopropylmalate dehydratase, small subunit compare
Atu1030 -3.7 -2.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0647 -3.7 -9.1 phosphoribosylamine--glycine ligase compare
Atu0040 -3.6 -2.0 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3740 -3.6 -13.1 fructose bisphosphate aldolase compare
Atu1845 -3.5 -4.2 phosphoribosylformylglycinamidine synthase I compare
Atu0298 -3.5 -8.8 orotidine 5 compare
Atu0602 -3.5 -11.5 glutamine synthetase compare
Atu2650 -3.4 -12.0 glycerol-3-phosphate dehydrogenase compare
Atu1308 -3.4 -5.5 aspartate carbamoyl transferase catalytic subunit compare
Atu2747 -3.4 -12.8 hypothetical protein compare
Atu0486 -3.3 -5.7 dihydroorotate dehydrogenase compare
Atu3783 -3.3 -15.0 glutamate synthase subunit beta compare
Atu1141 -3.2 -5.6 Phosphoribosylglycinamide synthetase compare
Atu0432 -3.1 -10.5 O-succinylhomoserine sulfhydrylase compare
Atu3739 -3.1 -4.5 phosphoglycerate kinase compare
Atu1810 -3.1 -1.5 hypothetical protein compare
Atu3483 -3.0 -7.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu3784 -2.9 -20.9 glutamate synthase large subunit compare
Atu2015 -2.9 -15.1 aminotransferase compare
Atu1021 -2.9 -2.9 outer membrane protein compare
Atu0038 -2.9 -8.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1307 -2.8 -4.8 dihydroorotase compare
Atu1589 -2.8 -5.6 aminotransferase, class I compare
Atu0659 -2.7 -6.5 NTP pyrophosphohydrolase, MutT family compare
Atu1620 -2.7 -13.0 triosephosphate isomerase compare
Atu0601 -2.7 -11.1 oxidoreductase compare
Atu2115 -2.7 -10.8 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0421 -2.6 -2.4 ABC transporter, membrane spanning protein compare
Atu1904 -2.4 -2.9 transcriptional regulator compare
Atu1604 -2.4 -14.9 poly-beta-hydroxybutyrate synthase compare
Atu4173 -2.4 -4.3 phosphoenolpyruvate-protein phosphotransferase compare
Atu2831 -2.4 -8.0 glucose inhibited division protein A compare
Atu0999 -2.3 -7.4 magnesium transport protein compare
Atu1578 -2.3 -7.8 ABC transporter, membrane spanning protein (amino acid) conserved
Atu0062 -2.3 -8.9 transcriptional regulator, ROK family compare
Atu6098 -2.3 -1.2 transcriptional regulator, HTH family compare
Atu1577 -2.2 -5.4 ABC transporter, substrate binding protein (amino acid) conserved
Atu1580 -2.1 -11.5 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare
Atu1579 -2.1 -9.7 ABC transporter, membrane spanning protein (amino acid) conserved
Atu4514 -2.0 -5.3 RpiR family transcriptional regulator compare
Atu2155 -1.9 -14.1 methionine synthase compare
Atu3908 -1.9 -11.5 GntR family transcriptional regulator compare
Atu2770 -1.8 -8.0 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu4685 -1.8 -11.8 LacI family transcriptional regulator compare
Atu0912 -1.8 -1.6 Na+/H+ antiporter compare
Atu4711 -1.8 -7.2 two component sensor kinase compare
Atu3910 -1.8 -5.4 LamB/YcsF family protein compare
Atu3288 -1.8 -7.6 hydroxyethylthiazole kinase compare
Atu2569 -1.7 -12.0 thiamine biosynthesis protein compare
Atu2554 -1.7 -3.6 lysyl-tRNA synthetase compare
Atu3289 -1.6 -4.4 thiamine-phosphate pyrophosphorylase compare
Atu2548 -1.6 -10.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3290 -1.6 -7.3 phosphomethylpyrimidine kinase compare
Atu0434 -1.6 -2.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0981 -1.5 -8.8 glutamate-ammonia-ligase adenylyltransferase compare
Atu0388 -1.5 -9.8 two component sensor kinase compare
Atu1686 -1.5 -10.7 peptidyl-prolyl cis-trans isomerse D compare
Atu3468 -1.5 -1.5 hypothetical protein compare
Atu0368 -1.5 -4.3 tRNA pseudouridine synthase I compare
Atu0977 -1.4 -3.6 serine protease DO-like protease compare
Atu2832 -1.4 -3.7 tRNA modification GTPase compare
Atu2274 -1.4 -7.5 cation efflux system protein compare
Atu2684 -1.4 -1.6 hypothetical protein compare
Atu3162 -1.4 -7.8 LacI family transcriptional regulator compare
Atu3763 -1.4 -2.3 hypothetical protein compare
Atu4317 -1.4 -3.4 TetR family transcriptional regulator compare
Atu1463 -1.3 -4.6 glycine cleavage system component H compare
Atu3613 -1.3 -6.0 hypothetical protein compare
Atu4099 -1.3 -5.4 hypothetical protein compare
Atu5125 -1.3 -4.3 GntR family transcriptional regulator compare
Atu1464 -1.3 -4.5 glycine cleavage system T protein, aminomethyltransferase compare
Atu3963 -1.2 -6.5 GntR family transcriptional regulator compare
Atu1254 -1.2 -1.7 transcriptional regulator, ArsR family compare
Atu2532 -1.2 -4.6 transcriptional regulator, MarR family compare
Atu0636 -1.2 -6.0 hypothetical protein compare
Atu0792 -1.2 -4.8 hypothetical protein compare
Atu0498 -1.2 -6.7 hypothetical protein compare
Atu2807 -1.2 -5.9 cob(I)alamin adenosyltransferase compare
Atu0361 -1.2 -2.1 transcriptional regulator compare
Atu4446 -1.2 -7.8 hypothetical protein compare
Atu4346 -1.2 -5.7 hypothetical protein compare
Atu5007 -1.2 -4.9 santhopine-responsive transcriptional repressor compare
Atu0876 -1.2 -1.4 superoxide dismutase compare
Atu4824 -1.1 -6.9 IclR family transcriptional regulator compare
Atu2205 -1.1 -3.8 transcriptional regulator, MarR family compare
Atu5464 -1.1 -5.9 IclR family transcriptional regulator compare
Atu4096 -1.1 -5.1 nicotinate-nucleotide pyrophosphorylase compare
Atu0419 -1.1 -1.9 two component sensor kinase compare
Atu0852 -1.1 -4.9 transcriptional regulator, MarR family compare
Atu2045 -1.1 -7.1 HFLK protein compare
Atu2424 -1.1 -4.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu2044 -1.1 -3.6 HFLC protein compare
Atu0184 -1.1 -1.7 glucokinase compare
Atu1291 -1.1 -2.4 hypothetical protein compare
Atu0658 -1.1 -5.5 phosphate permease compare
Atu3997 -1.0 -7.5 biotin synthetase compare
Atu0784 -1.0 -3.3 hypothetical protein compare
Atu0188 -1.0 -3.3 ABC transporter, membrane spanning protein (peptide) compare
Atu3337 -1.0 -5.9 LacI family transcriptional regulator compare
Atu2239 -1.0 -3.9 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu3226 -1.0 -5.2 GntR family transcriptional regulator compare
Atu4364 -1.0 -6.5 LacI family transcriptional regulator compare
Atu0354 -1.0 -2.2 ferric uptake regulator compare
Atu2803 -1.0 -3.1 Cobalamin biosynthesis associated protein compare
Atu2427 -1.0 -5.2 ABC transporter, membrane spanning protein compare
Atu0190 -1.0 -5.1 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1774 -1.0 -5.3 ABC transporter, substrate binding protein (peptide) compare
Atu8130 -1.0 -5.6 hypothetical protein compare
Atu2237 -1.0 -4.7 cytochrome c1 compare
Atu1462 -1.0 -6.6 glycine cleavage system protein P2 compare
Atu0590 -0.9 -6.1 transcriptional regulator repressor compare
Atu3144 -0.9 -5.2 GntR family transcriptional regulator compare
Atu0189 -0.9 -1.9 ABC transporter, membrane spanning protein (peptide) compare
Atu1286 -0.9 -2.2 hypothetical protein compare
Atu4773 -0.9 -1.7 two component response regulator compare
Atu0331 -0.9 -2.5 sigma-54 modulation protein compare
Atu1339 -0.9 -3.0 ribonuclease E compare
Atu0029 -0.9 -4.2 S-adenosylhomocysteine hydrolase compare
Atu4825 -0.9 -4.6 dehydrogenase compare
Atu1851 -0.9 -2.5 BolA/YrbA family protein compare
Atu8047 -0.9 -2.5 hypothetical protein compare
Atu2800 -0.9 -1.3 precorrin-3B C17-methyltransferase compare
Atu1705 -0.9 -3.5 SEC-independent protein translocase protein compare
Atu0536 -0.9 -3.8 hypothetical protein compare
Atu0886 -0.9 -1.2 hypothetical protein compare
Atu2789 -0.9 -2.7 hypothetical protein compare
Atu2809 -0.9 -5.7 cobalamin biosynthesis protein compare
Atu4576 -0.9 -5.9 ROK family transcriptional regulator compare
Atu2426 -0.9 -5.5 ABC transporter, membrane spanning protein (branched chain amino acid) compare
Atu0401 -0.9 -4.0 fructokinase compare
Atu2692 -0.9 -3.4 intracellular septation protein compare
Atu2083 -0.9 -2.8 DNA repair protein RecN compare
Atu2682 -0.9 -1.6 hypothetical protein compare
Atu2494 -0.9 -5.0 NAD(P)+ transhydrogenase beta chain compare
Atu0803 -0.9 -6.9 pyruvate,orthophosphate dikinase compare
Atu8177 -0.8 -3.9 hypothetical protein compare
Atu5486 -0.8 -3.1 hypothetical protein compare
Atu1667 -0.8 -1.7 hypothetical protein compare
Atu2238 -0.8 -4.4 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu4451 -0.8 -5.6 mannitol 2-dehydrogenase compare
Atu2662 -0.8 -1.4 acetyltransferase compare
Atu1419 -0.8 -3.8 transcriptional regulator, GntR family compare
Atu3730 -0.8 -1.4 hypothetical protein compare
Atu2802 -0.8 -3.8 precorrin-8X methylmutase compare
Atu2207 -0.8 -3.7 two component sensor kinase compare
Atu1223 -0.8 -0.9 hypothetical protein compare
Atu1522 -0.8 -3.8 transcriptional regulator, LacI family compare
Atu2808 -0.8 -4.3 cobyric acid synthase compare
Atu2745 -0.8 -6.1 acetyl-coenzyme A synthetase compare
Atu2804 -0.8 -5.2 cobaltochelatase subunit compare
Atu8087 -0.8 -0.6 putative peptidoglycan binding protein compare
Atu2805 -0.8 -4.1 cobalamin synthesis protein compare
Atu3732 -0.8 -3.7 hemolysin compare
Atu4098 -0.8 -6.2 quinolinate synthetase compare
Atu1891 -0.8 -3.1 cobalamin biosynthesis protein compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source L-Alanine in Agrobacterium fabrum C58

For carbon source L-Alanine across organisms