Experiment set1IT069 for Variovorax sp. OAS795

Compare to:

Sodium Formate carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS17265 -5.5 -5.0 two-component system response regulator OmpR compare
ABID97_RS22625 -4.6 -11.5 HAMP domain-containing sensor histidine kinase compare
ABID97_RS22620 -4.2 -6.1 response regulator transcription factor compare
ABID97_RS09180 -4.1 -4.9 DNA polymerase I compare
ABID97_RS01565 -3.5 -14.2 DNA starvation/stationary phase protection protein compare
ABID97_RS17270 -3.5 -9.6 ATP-binding protein compare
ABID97_RS23220 -3.4 -1.7 glutamate synthase subunit beta compare
ABID97_RS04760 -3.2 -2.2 SPOR domain-containing protein compare
ABID97_RS23225 -3.2 -16.4 glutamate synthase-related protein compare
ABID97_RS13860 -3.1 -8.1 hypothetical protein compare
ABID97_RS26160 -2.9 -1.6 nuclear transport factor 2 family protein compare
ABID97_RS05280 -2.8 -1.9 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS12180 -2.6 -2.5 hypothetical protein compare
ABID97_RS08435 -2.6 -1.8 phosphoribosylanthranilate isomerase compare
ABID97_RS05250 -2.4 -9.5 anthranilate synthase component I compare
ABID97_RS06575 -2.4 -6.4 trehalose-phosphatase compare
ABID97_RS07260 -2.3 -7.4 TIM44-like domain-containing protein compare
ABID97_RS19630 -2.3 -1.3 TRAP transporter small permease compare
ABID97_RS00255 -2.3 -13.4 type IV pilus twitching motility protein PilT compare
ABID97_RS08425 -2.3 -5.5 tryptophan synthase subunit alpha compare
ABID97_RS07855 -2.2 -2.7 ABC transporter ATP-binding protein compare
ABID97_RS21150 -2.2 -10.2 FAD-dependent oxidoreductase compare
ABID97_RS12855 -2.0 -3.2 CbbX protein compare
ABID97_RS03800 -2.0 -3.0 O-antigen ligase family protein compare
ABID97_RS04500 -2.0 -1.9 HPr(Ser) kinase/phosphatase compare
ABID97_RS16595 -2.0 -4.4 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS05260 -2.0 -1.5 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS25690 -2.0 -1.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABID97_RS25015 -1.9 -4.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS03910 -1.9 -2.2 orotate phosphoribosyltransferase compare
ABID97_RS16065 -1.9 -1.6 PDR/VanB family oxidoreductase compare
ABID97_RS23935 -1.9 -2.2 twin transmembrane helix small protein compare
ABID97_RS22135 -1.9 -1.3 LysR family transcriptional regulator compare
ABID97_RS04245 -1.9 -2.2 acyl-CoA thioesterase compare
ABID97_RS15665 -1.9 -8.1 [protein-PII] uridylyltransferase compare
ABID97_RS28635 -1.9 -2.9 IclR family transcriptional regulator compare
ABID97_RS12875 -1.8 -3.8 class 1 fructose-bisphosphatase compare
ABID97_RS13990 -1.8 -4.9 amino acid aminotransferase compare
ABID97_RS23360 -1.8 -1.2 hypothetical protein compare
ABID97_RS02600 -1.8 -5.6 homoserine O-acetyltransferase compare
ABID97_RS08220 -1.8 -10.3 phosphoenolpyruvate carboxylase compare
ABID97_RS19065 -1.8 -4.6 GntR family transcriptional regulator compare
ABID97_RS17590 -1.8 -9.1 endopeptidase La compare
ABID97_RS16690 -1.7 -4.9 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS24170 -1.7 -4.4 ATP-binding protein compare
ABID97_RS24045 -1.7 -3.9 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS02420 -1.7 -6.0 protealysin inhibitor emfourin compare
ABID97_RS02110 -1.7 -10.8 type IV pilus modification protein PilV compare
ABID97_RS12850 -1.7 -2.9 ribulose bisphosphate carboxylase small subunit compare
ABID97_RS05095 -1.6 -1.2 DUF4150 domain-containing protein compare
ABID97_RS12860 -1.6 -2.2 HAD-IA family hydrolase compare
ABID97_RS06345 -1.6 -4.1 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS02460 -1.6 -11.3 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS13865 -1.6 -4.5 hypothetical protein compare
ABID97_RS04710 -1.6 -7.1 malate synthase G compare
ABID97_RS12140 -1.6 -8.0 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS02120 -1.6 -10.5 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS02140 -1.6 -9.4 sugar transferase compare
ABID97_RS23430 -1.5 -7.9 type IV-A pilus assembly ATPase PilB compare
ABID97_RS07430 -1.5 -6.2 pantoate--beta-alanine ligase compare
ABID97_RS14625 -1.5 -4.0 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS18580 -1.5 -1.7 CoA transferase compare
ABID97_RS02115 -1.5 -8.2 PilW family protein compare
ABID97_RS20980 -1.5 -1.3 transcriptional repressor compare
ABID97_RS02125 -1.5 -12.5 PilC/PilY family type IV pilus protein compare
ABID97_RS17240 -1.5 -8.6 'bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase' pseudo=_no_value transl_table=11 compare
ABID97_RS15375 -1.5 -4.7 DUF934 domain-containing protein compare
ABID97_RS23085 -1.5 -6.5 histidine triad nucleotide-binding protein compare
ABID97_RS12880 -1.5 -3.2 phosphoribulokinase compare
ABID97_RS23440 -1.5 -6.7 A24 family peptidase compare
ABID97_RS03915 -1.5 -3.6 DUF4124 domain-containing protein compare
ABID97_RS22705 -1.4 -7.8 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS02145 -1.4 -7.0 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS02135 -1.4 -5.0 GspH/FimT family pseudopilin compare
ABID97_RS14090 -1.4 -0.9 response regulator transcription factor compare
ABID97_RS16910 -1.4 -6.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS10885 -1.4 -3.3 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS27365 -1.4 -0.9 nitrogen assimilation transcriptional regulator NAC compare
ABID97_RS24705 -1.4 -4.8 response regulator compare
ABID97_RS25525 -1.3 -3.1 LacI family DNA-binding transcriptional regulator compare
ABID97_RS10305 -1.3 -1.7 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS23915 -1.3 -3.1 heme o synthase compare
ABID97_RS12845 -1.3 -2.6 form I ribulose bisphosphate carboxylase large subunit compare
ABID97_RS00780 -1.3 -2.2 ABC transporter ATP-binding protein compare
ABID97_RS23650 -1.3 -9.0 serine/threonine-protein kinase compare
ABID97_RS16600 -1.3 -5.4 CysB family HTH-type transcriptional regulator compare
ABID97_RS23435 -1.3 -8.1 type II secretion system F family protein compare
ABID97_RS18205 -1.3 -3.6 XRE family transcriptional regulator compare
ABID97_RS08445 -1.3 -6.5 FimV/HubP family polar landmark protein compare
ABID97_RS05670 -1.3 -1.8 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS17600 -1.3 -2.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS16535 -1.3 -4.5 arginine/lysine/ornithine decarboxylase compare
ABID97_RS20615 -1.3 -5.2 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS06275 -1.2 -1.4 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS12965 -1.2 -1.5 DUF2169 domain-containing protein compare
ABID97_RS03640 -1.2 -3.7 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS11115 -1.2 -9.3 isocitrate lyase compare
ABID97_RS24690 -1.2 -5.9 methyl-accepting chemotaxis protein compare
ABID97_RS02130 -1.2 -7.9 type IV pilin protein compare
ABID97_RS26490 -1.2 -1.0 aspartate/glutamate racemase family protein compare
ABID97_RS26990 -1.2 -1.3 ornithine carbamoyltransferase compare
ABID97_RS13870 -1.2 -2.9 hypothetical protein compare
ABID97_RS01825 -1.2 -7.6 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS01840 -1.1 -6.6 DUF1631 family protein compare
ABID97_RS25190 -1.1 -7.7 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABID97_RS06415 -1.1 -7.2 sigma-54 dependent transcriptional regulator compare
ABID97_RS04960 -1.1 -0.8 ATP-binding protein compare
ABID97_RS20025 -1.1 -1.1 D-glycerate dehydrogenase compare
ABID97_RS23380 -1.1 -6.4 lytic transglycosylase domain-containing protein compare
ABID97_RS16985 -1.1 -2.8 transcriptional repressor LexA compare
ABID97_RS03275 -1.1 -2.3 hypothetical protein compare
ABID97_RS04505 -1.1 -1.9 ferric iron uptake transcriptional regulator compare
ABID97_RS09935 -1.1 -5.3 hypothetical protein compare
ABID97_RS02200 -1.1 -8.3 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS21770 -1.1 -6.5 aminopeptidase N compare
ABID97_RS18495 -1.1 -1.1 DUF2889 domain-containing protein compare
ABID97_RS12865 -1.1 -2.4 ribulose-phosphate 3-epimerase compare
ABID97_RS23230 -1.1 -6.0 transposase compare
ABID97_RS14095 -1.1 -6.5 PAS domain S-box protein compare
ABID97_RS19375 -1.0 -3.6 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS00570 -1.0 -2.3 HPr family phosphocarrier protein compare
ABID97_RS16915 -1.0 -5.7 ATP-dependent Clp protease adapter ClpS compare
ABID97_RS11960 -1.0 -0.6 hypothetical protein compare
ABID97_RS05275 -1.0 -1.4 anthranilate phosphoribosyltransferase compare
ABID97_RS06175 -1.0 -7.2 STAS domain-containing protein compare
ABID97_RS16695 -1.0 -6.9 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS23270 -1.0 -4.7 pilus assembly protein PilP compare
ABID97_RS03110 -1.0 -4.6 helix-turn-helix transcriptional regulator compare
ABID97_RS19695 -1.0 -1.1 alpha/beta fold hydrolase compare
ABID97_RS26545 -1.0 -0.8 alpha/beta fold hydrolase compare
ABID97_RS26370 -0.9 -1.1 PIN domain-containing protein compare
ABID97_RS03125 -0.9 -4.5 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS11050 -0.9 -2.2 crosslink repair DNA glycosylase YcaQ family protein compare
ABID97_RS14975 -0.9 -2.7 hypothetical protein compare
ABID97_RS28555 -0.9 -2.0 methyltransferase domain-containing protein compare
ABID97_RS07435 -0.9 -4.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS07840 -0.9 -5.3 branched-chain amino acid ABC transporter permease compare
ABID97_RS10695 -0.9 -4.3 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS17895 -0.9 -3.6 transcriptional regulator NrdR compare
ABID97_RS01590 -0.9 -2.5 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABID97_RS27635 -0.9 -0.7 NAD(P)H-dependent oxidoreductase compare
ABID97_RS08250 -0.9 -4.7 RluA family pseudouridine synthase compare
ABID97_RS19930 -0.9 -1.0 DUF2160 domain-containing protein compare
ABID97_RS22875 -0.9 -1.0 ABC transporter ATP-binding protein compare
ABID97_RS14305 -0.9 -1.1 arylesterase compare
ABID97_RS05755 -0.9 -1.8 glycosyltransferase compare
ABID97_RS17085 -0.9 -1.8 ORF6N domain-containing protein compare
ABID97_RS07920 -0.9 -1.9 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABID97_RS23015 -0.9 -4.8 glycosyltransferase family 4 protein compare
ABID97_RS13980 -0.9 -0.7 RnfABCDGE type electron transport complex subunit B compare
ABID97_RS18600 -0.9 -0.9 enoyl-CoA hydratase-related protein compare
ABID97_RS17250 -0.9 -4.4 3-hydroxybutyrate dehydrogenase compare
ABID97_RS02210 -0.9 -5.0 pilin compare
ABID97_RS13430 -0.9 -2.1 3-keto-5-aminohexanoate cleavage protein compare
ABID97_RS23485 -0.9 -1.5 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABID97_RS24920 -0.9 -0.8 Holliday junction branch migration protein RuvA compare
ABID97_RS17970 -0.9 -2.5 protein TolQ compare
ABID97_RS09800 -0.9 -0.7 hypothetical protein compare
ABID97_RS28355 -0.9 -1.0 2,5-dihydroxypyridine 5,6-dioxygenase compare
ABID97_RS18855 -0.9 -1.9 GMC family oxidoreductase N-terminal domain-containing protein compare
ABID97_RS00565 -0.9 -6.7 phosphoenolpyruvate--protein phosphotransferase compare
ABID97_RS08765 -0.9 -1.4 CobD/CbiB family protein compare
ABID97_RS16195 -0.9 -1.3 hypothetical protein compare
ABID97_RS27690 -0.9 -1.6 M23 family metallopeptidase compare
ABID97_RS26670 -0.9 -1.2 DUF1801 domain-containing protein compare
ABID97_RS01595 -0.9 -3.2 tRNA guanosine(34) transglycosylase Tgt compare
ABID97_RS06160 -0.9 -4.0 GTP-binding protein compare
ABID97_RS08440 -0.8 -3.0 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS04440 -0.8 -2.4 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta compare
ABID97_RS08360 -0.8 -3.0 DUF4845 domain-containing protein compare
ABID97_RS07410 -0.8 -3.7 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS05765 -0.8 -2.0 UDP-glucose 4-epimerase GalE compare
ABID97_RS23940 -0.8 -3.2 cytochrome c oxidase subunit 3 compare
ABID97_RS21930 -0.8 -2.1 adenylosuccinate synthetase compare
ABID97_RS01650 -0.8 -0.9 orotidine-5'-phosphate decarboxylase compare
ABID97_RS26250 -0.8 -3.0 hypothetical protein compare
ABID97_RS19660 -0.8 -2.0 hypothetical protein compare
ABID97_RS28380 -0.8 -1.1 ABC transporter ATP-binding protein compare
ABID97_RS16565 -0.8 -5.7 branched-chain amino acid ABC transporter substrate-binding protein compare
ABID97_RS19025 -0.8 -0.6 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS17525 -0.8 -4.9 acetate--CoA ligase compare
ABID97_RS19595 -0.8 -1.1 TRAP transporter small permease compare
ABID97_RS10800 -0.8 -2.4 alkyl hydroperoxide reductase subunit C compare
ABID97_RS27165 -0.8 -1.5 DUF4279 domain-containing protein compare
ABID97_RS27450 -0.8 -0.7 biotin-independent malonate decarboxylase subunit gamma compare
ABID97_RS15380 -0.8 -3.7 nitrite/sulfite reductase compare
ABID97_RS25935 -0.8 -1.8 Lrp/AsnC family transcriptional regulator compare
ABID97_RS02455 -0.8 -3.0 nucleotidyltransferase family protein compare
ABID97_RS06380 -0.8 -1.2 50S ribosomal protein L11 methyltransferase compare
ABID97_RS26580 -0.8 -2.1 acetoacetyl-CoA reductase compare
ABID97_RS04480 -0.8 -1.4 magnesium/cobalt transporter CorA compare
ABID97_RS07850 -0.8 -3.7 ABC transporter ATP-binding protein compare
ABID97_RS25130 -0.8 -4.1 carboxyl transferase domain-containing protein compare
ABID97_RS17595 -0.8 -4.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS27085 -0.8 -0.8 DNA alkylation repair protein compare
ABID97_RS18430 -0.8 -1.0 DUF2958 domain-containing protein compare
ABID97_RS17225 -0.8 -5.0 polyhydroxyalkanoate synthesis repressor PhaR compare
ABID97_RS16935 -0.8 -2.6 DUF192 domain-containing protein compare
ABID97_RS06315 -0.8 -5.5 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS08200 -0.8 -4.9 LytTR family DNA-binding domain-containing protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium Formate in Variovorax sp. OAS795

For carbon source Sodium Formate across organisms