Experiment set1IT069 for Enterobacter asburiae PDN3

Compare to:

M9 with sucrose and trichloroethylene 76.3 uM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_2585 -5.4 -3.0 pyrroline-5-carboxylate reductase compare
EX28DRAFT_2265 -4.5 -2.0 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_2252 -4.2 -2.8 TolA protein compare
EX28DRAFT_2270 -4.1 -1.4 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_2916 -3.9 -11.8 diaminopimelate decarboxylase compare
EX28DRAFT_2027 -3.8 -5.5 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_4446 -3.8 -12.7 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_3669 -3.6 -8.1 3-isopropylmalate dehydrogenase compare
EX28DRAFT_3668 -3.5 -10.3 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_3667 -3.4 -4.6 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_4156 -3.3 -3.1 ribulose-phosphate 3-epimerase compare
EX28DRAFT_4421 -3.2 -1.5 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_3046 -3.2 -10.2 cystathionine beta-lyase, bacterial compare
EX28DRAFT_2650 -3.2 -10.6 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_2651 -3.0 -6.7 glutamate 5-kinase compare
EX28DRAFT_0537 -3.0 -11.3 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_4418 -3.0 -8.4 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_2851 -3.0 -5.3 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_4331 -3.0 -10.3 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_3224 -2.9 -6.9 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_3670 -2.9 -8.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_2701 -2.9 -9.3 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_4443 -2.9 -12.3 dihydroxy-acid dehydratase compare
EX28DRAFT_0934 -2.9 -12.1 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_4493 -2.8 -4.7 Transcriptional regulator compare
EX28DRAFT_0538 -2.8 -9.9 histidinol-phosphate aminotransferase compare
EX28DRAFT_4444 -2.8 -7.3 threonine ammonia-lyase, biosynthetic, long form compare
EX28DRAFT_4419 -2.8 -2.1 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_0535 -2.7 -7.7 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_4544 -2.7 -2.3 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_2945 -2.7 -1.6 tyrosine recombinase XerD compare
EX28DRAFT_4422 -2.6 -8.3 argininosuccinate lyase compare
EX28DRAFT_0272 -2.6 -2.5 phosphohistidine phosphatase, SixA compare
EX28DRAFT_3671 -2.6 -5.8 RNA compare
EX28DRAFT_4411 -2.6 -11.9 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_0540 -2.6 -6.8 ATP phosphoribosyltransferase compare
EX28DRAFT_3614 -2.6 -8.9 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_4153 -2.6 -3.1 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_0933 -2.5 -12.2 tryptophan synthase, beta subunit compare
EX28DRAFT_2846 -2.5 -5.8 adenylyl-sulfate kinase compare
EX28DRAFT_2272 -2.5 -8.3 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_0125 -2.5 -1.1 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_2548 -2.5 -6.1 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_0539 -2.4 -7.3 histidinol dehydrogenase compare
EX28DRAFT_0935 -2.4 -8.4 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_0536 -2.4 -2.8 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_0936 -2.4 -6.6 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_4445 -2.4 -7.0 Transcriptional regulator compare
EX28DRAFT_0534 -2.3 -9.1 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_2699 -2.3 -7.7 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_0533 -2.2 -5.8 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_2917 -2.2 -4.0 Transcriptional regulator compare
EX28DRAFT_3711 -2.2 -1.7 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_0046 -2.2 -3.2 shikimate dehydrogenase compare
EX28DRAFT_0932 -2.1 -6.1 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_3616 -2.1 -4.2 threonine synthase compare
EX28DRAFT_3401 -2.0 -2.0 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_4269 -1.9 -1.5 SOS regulatory protein LexA compare
EX28DRAFT_2853 -1.9 -6.8 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_0494 -1.9 -3.7 Protein-tyrosine-phosphatase compare
EX28DRAFT_2893 -1.8 -5.6 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_3710 -1.7 -5.5 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_1620 -1.7 -1.7 hypothetical protein compare
EX28DRAFT_2852 -1.7 -7.4 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_3613 -1.7 -4.8 RNA compare
EX28DRAFT_4420 -1.6 -1.8 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_0214 -1.6 -4.0 cysteine synthase A compare
EX28DRAFT_3276 -1.6 -4.7 glutamate synthase small subunit family protein, proteobacterial compare
EX28DRAFT_1128 -1.6 -1.5 hypothetical protein compare
EX28DRAFT_0469 -1.6 -2.6 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
EX28DRAFT_2043 -1.6 -8.3 transcriptional regulator, AsnC family compare
EX28DRAFT_3449 -1.6 -1.8 Predicted membrane protein compare
EX28DRAFT_2848 -1.6 -8.7 sulfate adenylyltransferase, small subunit compare
EX28DRAFT_1841 -1.6 -1.0 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_4478 -1.6 -4.5 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_0284 -1.6 -6.6 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_3646 -1.6 -5.7 4-hydroxythreonine-4-phosphate dehydrogenase compare
EX28DRAFT_1050 -1.6 -1.8 luciferase family oxidoreductase, group 1 compare
EX28DRAFT_2849 -1.5 -5.8 uroporphyrin-III C-methyltransferase compare
EX28DRAFT_0065 -1.5 -1.4 thioredoxin compare
EX28DRAFT_1497 -1.5 -1.5 hypothetical protein compare
EX28DRAFT_2425 -1.5 -1.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3461 -1.5 -3.6 ornithine carbamoyltransferase compare
EX28DRAFT_0545 -1.5 -3.4 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_0291 -1.5 -2.6 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_4347 -1.4 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1530 -1.4 -2.2 hypothetical protein compare
EX28DRAFT_4442 -1.4 -3.7 branched-chain amino acid aminotransferase, group I compare
EX28DRAFT_3006 -1.4 -1.1 citrate lyase acyl carrier protein compare
EX28DRAFT_2847 -1.4 -7.3 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_0922 -1.4 -1.9 TonB family C-terminal domain compare
EX28DRAFT_1123 -1.4 -6.1 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_4203 -1.4 -1.5 phosphonates metabolism transcriptional regulator PhnF compare
EX28DRAFT_0001 -1.4 -2.2 Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain compare
EX28DRAFT_2240 -1.3 -2.3 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_0132 -1.3 -3.8 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_0076 -1.3 -3.2 elongation factor 4 compare
EX28DRAFT_1382 -1.3 -1.7 transcriptional regulator, TetR family compare
EX28DRAFT_0726 -1.3 -2.1 C-terminal peptidase (prc) compare
EX28DRAFT_2075 -1.3 -2.7 type II secretion system protein H compare
EX28DRAFT_4383 -1.2 -6.2 transcriptional regulator, XRE family with cupin sensor compare
EX28DRAFT_3647 -1.2 -3.7 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_0434 -1.2 -1.3 hypothetical protein compare
EX28DRAFT_1056 -1.2 -1.6 ABC-type polar amino acid transport system, ATPase component compare
EX28DRAFT_0111 -1.2 -1.9 FeS cluster assembly scaffold IscU compare
EX28DRAFT_0068 -1.2 -1.2 autonomous glycyl radical cofactor GrcA compare
EX28DRAFT_2702 -1.2 -4.2 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_0190 -1.1 -0.9 transcriptional regulator, Spx/MgsR family compare
EX28DRAFT_2259 -1.1 -2.0 Cytochrome bd-type quinol oxidase, subunit 1 compare
EX28DRAFT_2531 -1.1 -2.3 endopeptidase La compare
EX28DRAFT_1644 -1.1 -2.1 Predicted oxidoreductase compare
EX28DRAFT_3275 -1.1 -7.5 Glutamate synthase domain 2 compare
EX28DRAFT_2250 -1.1 -2.1 peptidoglycan-associated lipoprotein compare
EX28DRAFT_0292 -1.1 -1.4 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_1941 -1.1 -1.4 Protein of unknown function (DUF4089) compare
EX28DRAFT_0286 -1.0 -1.2 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_4386 -1.0 -2.4 Signal transduction histidine kinase compare
EX28DRAFT_3418 -1.0 -0.9 Bacterial regulatory helix-turn-helix protein, lysR family compare
EX28DRAFT_3426 -1.0 -1.0 conserved hypothetical protein EF_0831/AHA_3912 compare
EX28DRAFT_1825 -1.0 -1.2 uncharacterized proteobacterial lipoprotein compare
EX28DRAFT_0206 -1.0 -3.9 sulfate ABC transporter, permease protein CysT compare
EX28DRAFT_3883 -1.0 -3.1 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_1124 -1.0 -5.3 sucrose-6-phosphate hydrolase compare
EX28DRAFT_3566 -1.0 -1.5 Uncharacterized conserved protein compare
EX28DRAFT_0399 -1.0 -2.4 Transcriptional regulator compare
EX28DRAFT_4441 -0.9 -2.1 acetolactate synthase, small subunit (EC 2.2.1.6) compare
EX28DRAFT_4440 -0.9 -4.1 acetolactate synthase, large subunit (EC 2.2.1.6) compare
EX28DRAFT_0254 -0.9 -1.5 hypothetical protein compare
EX28DRAFT_1293 -0.9 -0.7 hypothetical protein compare
EX28DRAFT_0096 -0.9 -2.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
EX28DRAFT_3058 -0.9 -1.6 Signal transduction histidine kinase compare
EX28DRAFT_0770 -0.9 -2.0 Transglycosylase SLT domain compare
EX28DRAFT_3879 -0.9 -1.9 Glycosyltransferase compare
EX28DRAFT_4341 -0.9 -1.9 Protein-disulfide isomerase compare
EX28DRAFT_4297 -0.9 -0.9 cell division ATP-binding protein FtsE compare
EX28DRAFT_0058 -0.8 -2.6 23S compare
EX28DRAFT_2160 -0.8 -2.4 P pilus assembly protein, pilin FimA compare
EX28DRAFT_0205 -0.8 -3.8 sulfate/thiosulfate-binding protein compare
EX28DRAFT_0228 -0.8 -1.0 tRNA compare
EX28DRAFT_1305 -0.8 -2.9 hypothetical protein compare
EX28DRAFT_4515 -0.8 -1.2 hypothetical protein compare
EX28DRAFT_0647 -0.8 -1.1 Ferritin-like protein compare
EX28DRAFT_4152 -0.8 -0.6 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_3900 -0.8 -1.5 SpoU rRNA Methylase family/SpoU, rRNA methylase, C-terminal compare
EX28DRAFT_0901 -0.8 -0.9 hypothetical protein compare
EX28DRAFT_0531 -0.8 -5.2 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_2974 -0.8 -3.5 transketolase, bacterial and yeast compare
EX28DRAFT_2245 -0.8 -3.3 quinolinate synthetase (EC 2.5.1.72) compare
EX28DRAFT_3171 -0.8 -1.2 Predicted membrane protein compare
EX28DRAFT_0948 -0.8 -0.9 hypothetical protein compare
EX28DRAFT_1746 -0.8 -2.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4452 -0.8 -1.2 thioredoxin compare
EX28DRAFT_2589 -0.8 -0.6 Sigma-S stabilisation anti-adaptor protein compare
EX28DRAFT_2175 -0.8 -0.9 hypothetical protein compare
EX28DRAFT_0713 -0.8 -1.4 Uncharacterized protein, homolog of Cu resistance protein CopC compare
EX28DRAFT_3045 -0.8 -1.7 tonB-system energizer ExbB compare
EX28DRAFT_3849 -0.7 -1.6 PTS system, mannitol-specific IIC component compare
EX28DRAFT_3901 -0.7 -3.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_2509 -0.7 -2.0 transcriptional regulator, LacI family compare
EX28DRAFT_0038 -0.7 -1.0 K+ transport systems, NAD-binding component compare
EX28DRAFT_1383 -0.7 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1000 -0.7 -1.8 intracellular protease, PfpI family compare
EX28DRAFT_2518 -0.7 -3.7 ammonium transporter compare
EX28DRAFT_3383 -0.7 -0.8 Alpha/beta hydrolase family compare
EX28DRAFT_4170 -0.7 -4.0 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_0977 -0.7 -1.1 phage shock protein B compare
EX28DRAFT_1986 -0.7 -0.6 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_3645 -0.7 -1.1 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_4092 -0.7 -1.8 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase compare
EX28DRAFT_2985 -0.7 -2.9 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_0069 -0.7 -1.0 Superfamily II DNA and RNA helicases compare
EX28DRAFT_0091 -0.7 -0.5 hypothetical protein compare
EX28DRAFT_1016 -0.7 -1.4 Uncharacterized conserved protein compare
EX28DRAFT_0073 -0.7 -0.7 Negative regulator of sigma E activity compare
EX28DRAFT_2271 -0.7 -1.6 hypothetical protein compare
EX28DRAFT_0480 -0.7 -2.4 Signal transduction histidine kinase compare
EX28DRAFT_0202 -0.7 -1.0 Protein of unknown function (DUF2919) compare
EX28DRAFT_3954 -0.7 -4.3 acetolactate synthase, large subunit (EC 2.2.1.6) compare
EX28DRAFT_2375 -0.7 -2.2 ABC-type Fe2+-enterobactin transport system, periplasmic component compare
EX28DRAFT_4183 -0.7 -2.0 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
EX28DRAFT_2492 -0.7 -1.2 Protein of unknown function (DUF2496) compare
EX28DRAFT_3259 -0.7 -2.2 Predicted P-loop-containing kinase compare
EX28DRAFT_3166 -0.7 -0.8 Uncharacterized conserved protein compare
EX28DRAFT_1376 -0.7 -1.3 hypothetical protein compare
EX28DRAFT_1508 -0.7 -1.1 Membrane transporters of cations and cationic drugs compare
EX28DRAFT_3377 -0.7 -1.9 rRNA methylase, putative, group 3 compare
EX28DRAFT_3708 -0.7 -0.8 Transcriptional regulators compare
EX28DRAFT_0961 -0.7 -2.9 exoribonuclease II compare
EX28DRAFT_3947 -0.7 -1.4 RNA compare
EX28DRAFT_3148 -0.7 -2.1 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components compare
EX28DRAFT_0549 -0.7 -2.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3484 -0.7 -2.4 hypothetical protein compare
EX28DRAFT_3736 -0.7 -1.5 2'-5' RNA ligase compare
EX28DRAFT_0334 -0.7 -0.9 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_4003 -0.6 -1.1 phosphate ABC transporter, permease protein PstC compare
EX28DRAFT_3730 -0.6 -2.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
EX28DRAFT_0166 -0.6 -3.3 polyphosphate kinase 1 compare
EX28DRAFT_3898 -0.6 -0.9 DNA-directed RNA polymerase subunit omega (EC 2.7.7.6) compare
EX28DRAFT_4300 -0.6 -1.0 Predicted membrane protein compare
EX28DRAFT_3784 -0.6 -1.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress Sucrose across organisms