Experiment set1IT069 for Agrobacterium fabrum C58

Compare to:

L-Alanine carbon source

200 most important genes:

  gene name fitness t score description  
Atu2040 -6.5 -6.3 phosphoserine phosphatase compare
Atu0017 -5.8 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3706 -5.6 -10.8 D-3-phosphoglycerate dehydrogenase compare
Atu0039 -5.3 -3.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu1688 -5.2 -9.9 indole-3-glycerol-phosphate synthase compare
Atu2289 -5.1 -20.7 anthranilate synthase component I and II compare
Atu3754 -5.1 -8.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2791 -5.1 -11.0 3-isopropylmalate dehydrogenase compare
Atu1687 -4.9 -8.9 anthranilate phosphoribosyltransferase compare
Atu2709 -4.9 -21.5 3-isopropylmalate dehydratase, large subunit compare
Atu1205 -4.8 -16.5 threonine dehydratase compare
Atu1075 -4.8 -8.8 amidophosphoribosyltransferase compare
Atu2264 -4.7 -16.0 2-isopropylmalate synthase compare
Atu0537 -4.7 -9.0 histidinol dehydrogenase compare
Atu2036 -4.7 -16.7 acetolactate synthase III, large subunit compare
Atu1359 -4.7 -1.8 dnaK deletion suppressor protein compare
Atu3885 -4.6 -13.6 inositol monophosphatase compare
Atu3755 -4.6 -7.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1850 -4.6 -4.0 phosphoribosylformylglycinamidine synthetase II compare
Atu0043 -4.5 -4.4 imidazoleglycerol-phosphate dehydratase compare
Atu1307 -4.5 -8.0 dihydroorotase compare
Atu0678 -4.5 -9.5 histidyl-tRNA synthetase compare
Atu3291 -4.5 -9.2 Lpr family transcriptional regulator conserved
Atu3293 -4.4 -13.5 D-amino acid dehydrogenase small subunit conserved
Atu0679 -4.4 -6.7 ATP phosphoribosyltransferase compare
Atu1845 -4.4 -4.8 phosphoribosylformylglycinamidine synthase I compare
Atu3292 -4.3 -13.8 alanine racemase conserved
Atu0099 -4.2 -12.0 prephenate dehydratase compare
Atu0030 -4.2 -2.3 phosphocarrier protein HPr compare
Atu3707 -4.1 -6.0 phosphoserine aminotransferase compare
Atu0035 -4.1 -11.6 phosphoenolpyruvate carboxykinase compare
Atu1750 -4.0 -2.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu2747 -4.0 -12.1 hypothetical protein compare
Atu2726 -4.0 -23.2 pyruvate carboxylase compare
Atu1844 -3.9 -5.4 Phosphoribosylformylglycinamidine synthetase compare
Atu3482 -3.9 -7.2 pantoate--beta-alanine ligase compare
Atu2650 -3.8 -13.3 glycerol-3-phosphate dehydrogenase compare
Atu3469 -3.8 -4.5 phosphoglyceromutase compare
Atu3740 -3.7 -10.0 fructose bisphosphate aldolase compare
Atu0041 -3.7 -2.9 glutamine amidotransferase compare
Atu2790 -3.7 -2.2 3-isopropylmalate dehydratase, small subunit compare
Atu0647 -3.7 -8.9 phosphoribosylamine--glycine ligase compare
Atu0399 -3.7 -7.8 dihydroorotase compare
Atu1030 -3.7 -2.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0486 -3.6 -6.8 dihydroorotate dehydrogenase compare
Atu0040 -3.6 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1141 -3.6 -8.6 Phosphoribosylglycinamide synthetase compare
Atu3739 -3.6 -4.2 phosphoglycerate kinase compare
Atu1588 -3.5 -11.8 homoserine dehydrogenase compare
Atu3483 -3.3 -5.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1140 -3.3 -5.2 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0038 -3.3 -4.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu4505 -3.2 -11.2 LacI family transcriptional regulator compare
Atu0769 -3.2 -2.8 protoheme IX farnesyltransferase compare
Atu3731 -3.2 -8.0 5-formyltetrahydrofolate cyclo-ligase compare
Atu0432 -3.1 -8.0 O-succinylhomoserine sulfhydrylase compare
Atu0659 -3.1 -5.1 NTP pyrophosphohydrolase, MutT family compare
Atu0999 -3.0 -9.8 magnesium transport protein compare
Atu3783 -3.0 -17.8 glutamate synthase subunit beta compare
Atu3784 -3.0 -20.6 glutamate synthase large subunit compare
Atu1620 -2.9 -11.3 triosephosphate isomerase compare
Atu0602 -2.8 -12.6 glutamine synthetase compare
Atu2718 -2.8 -8.0 homoserine O-succinyltransferase compare
Atu0601 -2.7 -10.7 oxidoreductase compare
Atu1308 -2.7 -7.4 aspartate carbamoyl transferase catalytic subunit compare
Atu2115 -2.6 -12.8 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0298 -2.6 -5.5 orotidine 5 compare
Atu0421 -2.5 -2.3 ABC transporter, membrane spanning protein compare
Atu1580 -2.4 -13.0 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare
Atu6098 -2.4 -1.3 transcriptional regulator, HTH family compare
Atu0062 -2.4 -9.4 transcriptional regulator, ROK family compare
Atu0422 -2.4 -2.4 ABC transporter, membrane spanning protein compare
Atu2015 -2.3 -10.7 aminotransferase compare
Atu0912 -2.3 -1.7 Na+/H+ antiporter compare
Atu1589 -2.3 -8.0 aminotransferase, class I compare
Atu4173 -2.2 -4.1 phosphoenolpyruvate-protein phosphotransferase compare
Atu1579 -2.2 -12.8 ABC transporter, membrane spanning protein (amino acid) conserved
Atu1604 -2.1 -13.5 poly-beta-hydroxybutyrate synthase compare
Atu1577 -2.1 -6.0 ABC transporter, substrate binding protein (amino acid) conserved
Atu0434 -2.1 -1.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1578 -2.0 -8.1 ABC transporter, membrane spanning protein (amino acid) conserved
Atu0400 -2.0 -5.2 orotate phosphoribosyltransferase compare
Atu2831 -2.0 -6.4 glucose inhibited division protein A compare
Atu2554 -2.0 -2.7 lysyl-tRNA synthetase compare
Atu6189 -2.0 -1.6 protein secretion chaperone compare
Atu0723 -1.9 -2.3 FAD dependent oxidoreductase compare
Atu4685 -1.9 -9.8 LacI family transcriptional regulator compare
Atu0354 -1.9 -3.4 ferric uptake regulator compare
Atu3289 -1.8 -4.8 thiamine-phosphate pyrophosphorylase compare
Atu1904 -1.7 -4.8 transcriptional regulator compare
Atu2532 -1.7 -4.9 transcriptional regulator, MarR family compare
Atu2155 -1.7 -13.0 methionine synthase compare
Atu3290 -1.7 -8.8 phosphomethylpyrimidine kinase compare
Atu2569 -1.6 -10.4 thiamine biosynthesis protein compare
Atu2770 -1.6 -6.9 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu3908 -1.6 -8.8 GntR family transcriptional regulator compare
Atu2548 -1.6 -10.6 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3763 -1.5 -1.5 hypothetical protein compare
Atu1463 -1.5 -5.2 glycine cleavage system component H compare
Atu4099 -1.5 -7.8 hypothetical protein compare
Atu2044 -1.5 -7.2 HFLC protein compare
Atu3288 -1.5 -5.3 hydroxyethylthiazole kinase compare
Atu3910 -1.5 -7.4 LamB/YcsF family protein compare
Atu4711 -1.4 -6.5 two component sensor kinase compare
Atu3162 -1.4 -7.5 LacI family transcriptional regulator compare
Atu4514 -1.4 -5.0 RpiR family transcriptional regulator compare
Atu0981 -1.4 -8.2 glutamate-ammonia-ligase adenylyltransferase compare
Atu4217 -1.4 -1.8 TetR family transcriptional regulator compare
Atu0388 -1.3 -8.4 two component sensor kinase compare
Atu4346 -1.3 -5.9 hypothetical protein compare
Atu2045 -1.3 -5.3 HFLK protein compare
Atu0977 -1.3 -3.2 serine protease DO-like protease compare
Atu3963 -1.3 -6.5 GntR family transcriptional regulator compare
Atu1464 -1.3 -4.0 glycine cleavage system T protein, aminomethyltransferase compare
Atu4364 -1.3 -7.8 LacI family transcriptional regulator compare
Atu5125 -1.2 -4.3 GntR family transcriptional regulator compare
Atu4446 -1.2 -8.5 hypothetical protein compare
Atu2832 -1.2 -3.6 tRNA modification GTPase compare
Atu1686 -1.2 -8.0 peptidyl-prolyl cis-trans isomerse D compare
Atu1810 -1.2 -1.4 hypothetical protein compare
Atu2808 -1.2 -7.2 cobyric acid synthase compare
Atu4824 -1.2 -6.5 IclR family transcriptional regulator compare
Atu2237 -1.2 -4.3 cytochrome c1 compare
Atu0953 -1.2 -1.2 hypothetical protein compare
Atu2274 -1.2 -6.6 cation efflux system protein compare
Atu1021 -1.2 -2.8 outer membrane protein compare
Atu0368 -1.2 -4.0 tRNA pseudouridine synthase I compare
Atu3144 -1.2 -4.1 GntR family transcriptional regulator compare
Atu3613 -1.2 -4.8 hypothetical protein compare
Atu6114 -1.2 -3.0 hypothetical protein compare
Atu1242 -1.2 -6.3 cytochrome oxidase assembly factor compare
Atu0498 -1.2 -5.4 hypothetical protein compare
Atu4743 -1.2 -6.2 LacI family transcriptional regulator compare
Atu2796 -1.1 -3.6 precorrin-4 C11-methyltransferase compare
Atu0852 -1.1 -3.5 transcriptional regulator, MarR family compare
Atu2798 -1.1 -4.5 precorrin-6y methyltransferase compare
Atu8082 -1.1 -2.3 hypothetical protein compare
Atu4317 -1.1 -2.7 TetR family transcriptional regulator compare
Atu3337 -1.1 -6.8 LacI family transcriptional regulator compare
Atu1774 -1.1 -5.2 ABC transporter, substrate binding protein (peptide) compare
Atu0876 -1.1 -2.2 superoxide dismutase compare
Atu4096 -1.1 -6.5 nicotinate-nucleotide pyrophosphorylase compare
Atu8087 -1.1 -0.8 putative peptidoglycan binding protein compare
Atu1339 -1.1 -2.8 ribonuclease E compare
Atu1891 -1.1 -3.8 cobalamin biosynthesis protein compare
Atu1462 -1.0 -6.8 glycine cleavage system protein P2 compare
Atu2682 -1.0 -3.1 hypothetical protein compare
Atu2433 -1.0 -1.5 hypothetical protein compare
Atu4773 -1.0 -2.3 two component response regulator compare
Atu3732 -1.0 -4.5 hemolysin compare
Atu4825 -1.0 -5.9 dehydrogenase compare
Atu2793 -1.0 -4.8 cobyrinic acid a,c-diamide synthase compare
Atu0188 -1.0 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu8130 -1.0 -7.2 hypothetical protein compare
Atu2805 -1.0 -4.0 cobalamin synthesis protein compare
Atu1683 -1.0 -2.0 hypothetical protein compare
Atu2800 -1.0 -1.6 precorrin-3B C17-methyltransferase compare
Atu4576 -1.0 -6.2 ROK family transcriptional regulator compare
Atu2801 -1.0 -3.3 precorrin-2 C20 methyltransferase compare
Atu0658 -1.0 -5.8 phosphate permease compare
Atu0361 -1.0 -2.6 transcriptional regulator compare
Atu2803 -0.9 -3.4 Cobalamin biosynthesis associated protein compare
Atu2555 -0.9 -2.6 L-lysine 2,3-aminomutase compare
Atu0590 -0.9 -5.4 transcriptional regulator repressor compare
Atu2427 -0.9 -4.1 ABC transporter, membrane spanning protein compare
Atu2205 -0.9 -3.8 transcriptional regulator, MarR family compare
Atu2424 -0.9 -3.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu2802 -0.9 -4.4 precorrin-8X methylmutase compare
Atu3997 -0.9 -6.7 biotin synthetase compare
Atu4702 -0.9 -4.8 GntR family transcriptional regulator compare
Atu2125 -0.9 -1.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu0190 -0.9 -4.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3878 -0.9 -5.6 transcriptional regulator compare
Atu0583 -0.9 -4.7 hypothetical protein compare
Atu2123 -0.9 -3.6 methylenetetrahydrofolate reductase compare
Atu1369 -0.9 -1.4 HIT family protein compare
Atu2426 -0.8 -5.6 ABC transporter, membrane spanning protein (branched chain amino acid) compare
Atu0641 -0.8 -2.3 hypothetical protein compare
Atu2809 -0.8 -4.8 cobalamin biosynthesis protein compare
Atu2425 -0.8 -4.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu3115 -0.8 -4.4 TetR family transcriptional regulator compare
Atu4635 -0.8 -5.0 hypothetical protein compare
Atu2804 -0.8 -5.9 cobaltochelatase subunit compare
Atu0885 -0.8 -1.7 hypothetical protein compare
Atu0401 -0.8 -3.1 fructokinase compare
Atu5075 -0.8 -4.5 GntR family transcriptional regulator compare
Atu1705 -0.8 -3.9 SEC-independent protein translocase protein compare
Atu3226 -0.8 -4.4 GntR family transcriptional regulator compare
Atu4098 -0.8 -5.6 quinolinate synthetase compare
Atu1542 -0.8 -3.0 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2238 -0.8 -4.1 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu3623 -0.8 -3.0 DnaJ family molecular chaperone compare
Atu2494 -0.8 -4.5 NAD(P)+ transhydrogenase beta chain compare
Atu3912 -0.8 -4.0 hypothetical protein compare
Atu5464 -0.8 -4.0 IclR family transcriptional regulator compare
Atu0636 -0.8 -4.8 hypothetical protein compare
Atu2201 -0.7 -2.2 hydrolase compare
Atu1619 -0.7 -2.5 protein-export membrane protein SECG compare
Atu1848 -0.7 -3.7 transcriptional regulator, GntR family compare
Atu4072 -0.7 -1.0 nodulation protein N compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source L-Alanine in Agrobacterium fabrum C58

For carbon source L-Alanine across organisms